mRNA_A-nodosum_M_contig9265.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9265.7.1
Unique NamemRNA_A-nodosum_M_contig9265.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9265.7.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.630e-38
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 2 
Query:    5 AAVQQVFGMRIREMLTCPKCGLVSPEVPTTYEANIFHAHMSALQETRKKRPACSFDVALREACLGDTMTCTNAVCPLALRRERLPSRRSITGEPPSVFSLG 307
            A ++QVF MRIRE L CP+CG  SPE P TYEAN+F+AH+SAL+E R+K P C FDVALREA  GD +TC NA C L+ R+ERLPS+R ITG PPSVFSLG
Sbjct: 1706 AVIRQVFSMRIREALVCPRCGTSSPEKPATYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLVTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLG 1806
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BLAST of mRNA_A-nodosum_M_contig9265.7.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 9.090e-38
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 2 
Query:    5 AAVQQVFGMRIREMLTCPKCGLVSPEVPTTYEANIFHAHMSALQETRKKRPACSFDVALREACLGDTMTCTNAVCPLALRRERLPSRRSITGEPPSVFSLG 307
            A ++QVF MRIRE L CP+CG  SPE P  YEAN+F+AH+SAL+E R+K P C FDVALREA  GD MTC NA C L+ R+ERLPS+R ITG PPSVFSLG
Sbjct: 2250 AVIRQVFSMRIREALVCPRCGTSSPEKPAAYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLMTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLG 2350
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9265.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI6.630e-3867.33USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE9.090e-3867.33USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9265contigA-nodosum_M_contig9265:6258..7106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size311
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870397.8088486-CDS-A-nodosum_M_contig9265:6258..63831680870397.8088486-CDS-A-nodosum_M_contig9265:6258..6383Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9265 6259..6383 -
1680870397.832729-CDS-A-nodosum_M_contig9265:6922..71061680870397.832729-CDS-A-nodosum_M_contig9265:6922..7106Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9265 6923..7106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9265.7.1prot_A-nodosum_M_contig9265.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9265 6259..7106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9265.7.1

>prot_A-nodosum_M_contig9265.7.1 ID=prot_A-nodosum_M_contig9265.7.1|Name=mRNA_A-nodosum_M_contig9265.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
RGGGPTSVRHAHPRDVDMPQVRPCFSGGANHLRSKHFSRPHVGAAGDKKE
TSRMLVRCGTKGGVPRGHDDLHQRRLPSSPTTGAPAQPPVDHGRASVGIL
VGI
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mRNA from alignment at A-nodosum_M_contig9265:6258..7106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9265.7.1 ID=mRNA_A-nodosum_M_contig9265.7.1|Name=mRNA_A-nodosum_M_contig9265.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at A-nodosum_M_contig9265:6258..7106- (Ascophyllum nodosum dioecious)
CGCGGCGGCGGTCCAACAAGTGTTCGGCATGCGCATCCGCGAGATGTTGA
CATGCCCCAAGTGCGGCCTTGTTTCTCCGGAGGTGCCAACCACCTACGAA
GCAAACATTTTTCACGCCCACATGTCGGCGCTGCAGGAGACAAGAAAGAA
ACGTCCCGCATGCTCGTTCGATGTGGCACTAAGGGTGAGCTTGTTATCTA
GTTCATATAGTATTTGAGAGTGGTCGGCAGGGCATGCGTGTCTCTTATCA
AGCTTTTCTCAAAACCCTTCGTTTACCTTTTGCTTTAGACTTTTGCCTTT
GGCCTTTGCTGGCCTTTGGTATCGCAGCTATGCTGGGGGGCGTAGAAGCT
CGCGCAGAAAAGGCCTCCTCAGGTTTCTACTCACAGCGGCAGGCCTTTTT
TTTTACGCGCGCGAAGCGCCGCAGTTTTGTCTTTTTAACTGCCCTTCATG
TTCGCTCCGACTTGAGCAATAACCGACCATTAATAATCGGAATTTCATTC
ATTCATTCATATTTCATTGATTATTTCATGTACTGTACGTATTGGTTAAT
CTTTTTATTGATTGATTGAGTAATTAATTGACACGCTATCGAAAAAAAGA
AGACATGCATACACTTTTTACAAACACCTTGTATCCACGCGAAAAGCTGA
CCCTCTCTAATCGCTTTGACCGCGAAACCGTCCGCACCTTATAATTGCAT
GCGCGCGTTATCCCCCATCTCAGGAGGCGTGCCTCGGGGACACGATGACT
TGCACCAACGCCGTTTGCCCTCTAGCCCTACGACGGGAGCGCCTGCCCAG
CCGCCGGTCGATCACGGGCGAGCCTCCGTCGGTATTCTCGTTGGGATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9265:6258..7106-

>mRNA_A-nodosum_M_contig9265.7.1 ID=mRNA_A-nodosum_M_contig9265.7.1|Name=mRNA_A-nodosum_M_contig9265.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig9265:6258..7106- (Ascophyllum nodosum dioecious)
CGCGGCGGCGGTCCAACAAGTGTTCGGCATGCGCATCCGCGAGATGTTGA
CATGCCCCAAGTGCGGCCTTGTTTCTCCGGAGGTGCCAACCACCTACGAA
GCAAACATTTTTCACGCCCACATGTCGGCGCTGCAGGAGACAAGAAAGAA
ACGTCCCGCATGCTCGTTCGATGTGGCACTAAGGGAGGCGTGCCTCGGGG
ACACGATGACTTGCACCAACGCCGTTTGCCCTCTAGCCCTACGACGGGAG
CGCCTGCCCAGCCGCCGGTCGATCACGGGCGAGCCTCCGTCGGTATTCTC
GTTGGGATT
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