mRNA_A-nodosum_M_contig9265.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9265.4.1
Unique NamemRNA_A-nodosum_M_contig9265.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9265.4.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 7.930e-14
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   46 DVSFGKAHLRTFYCFDVKKHHYVAFVHNSGRGEWLLLDDDKAIP 177
            +VS GKA LR F+CF V+KHHYVAFV+N  R EWLLLDDD+A+P
Sbjct: 1847 EVSAGKAQLRGFFCFQVQKHHYVAFVYNRDRQEWLLLDDDQAVP 1890
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BLAST of mRNA_A-nodosum_M_contig9265.4.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.170e-13
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   46 DVSFGKAHLRTFYCFDVKKHHYVAFVHNSGRGEWLLLDDDKAIP 177
            +VS GKA LR F+CF V+ HHYVAFV+N  R EWLLLDDD+A+P
Sbjct: 2390 EVSAGKAQLRGFFCFQVQMHHYVAFVYNRDRQEWLLLDDDQAVP 2433
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9265.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI7.930e-1470.45USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE5.170e-1368.18USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9265contigA-nodosum_M_contig9265:5624..6158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size177
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.25e-14
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size153
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870397.9209046-CDS-A-nodosum_M_contig9265:5623..57371680870397.9209046-CDS-A-nodosum_M_contig9265:5623..5737Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9265 5624..5737 -
1680870397.9326453-CDS-A-nodosum_M_contig9265:6095..61341680870397.9326453-CDS-A-nodosum_M_contig9265:6095..6134Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9265 6096..6134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870397.9450684-UTR-A-nodosum_M_contig9265:6134..61581680870397.9450684-UTR-A-nodosum_M_contig9265:6134..6158Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9265 6135..6158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9265.4.1prot_A-nodosum_M_contig9265.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9265 5624..6134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9265.4.1

>prot_A-nodosum_M_contig9265.4.1 ID=prot_A-nodosum_M_contig9265.4.1|Name=mRNA_A-nodosum_M_contig9265.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
MVWPLEEDVSFGKAHLRTFYCFDVKKHHYVAFVHNSGRGEWLLLDDDKAI
P
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mRNA from alignment at A-nodosum_M_contig9265:5624..6158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9265.4.1 ID=mRNA_A-nodosum_M_contig9265.4.1|Name=mRNA_A-nodosum_M_contig9265.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=535bp|location=Sequence derived from alignment at A-nodosum_M_contig9265:5624..6158- (Ascophyllum nodosum dioecious)
CGCGGAGGGTGTGGAGTCCCGGGGATGGTGTGGCCATTGGAGGAAGACGT
TTCCTTCGGGAAGGTAAAAGGGGTGACGGCAAGGTGTTTTCGCTGCGAGA
AGGCCGAGCGCCTAACTCACGCGCACGCGTGCGTGACCCTTGTTTTGTTG
TGTATGTATTTTGGTTATGATCGTATCTGTGATGCGTTCTTTATTGTACA
ATCGGCAACGATCGATGATCCACCCGAGCATTAACACACGTATACACACC
AAGTTTTGTCGACTTGGCGTTGGGTTTGAAAGCTGGTGGTGGACTCAGCG
CGCTTACAGGGTTCCATGGCGATGTCCCCTCCTCTTGTCACCCCCCTAGC
GACTGCGGCTGTCGGCGTGGGCTAGACTTATCCCTCCCTCGATTTCCTCC
CTCCGCGCTCCTCTGCTCCAGGCCCACTTACGAACTTTTTATTGCTTCGA
CGTGAAGAAGCACCATTACGTCGCATTTGTTCACAACAGTGGGAGGGGGG
AGTGGCTGCTGCTGGATGATGACAAGGCAATTCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9265:5624..6158-

>mRNA_A-nodosum_M_contig9265.4.1 ID=mRNA_A-nodosum_M_contig9265.4.1|Name=mRNA_A-nodosum_M_contig9265.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig9265:5624..6158- (Ascophyllum nodosum dioecious)
ATGGTGTGGCCATTGGAGGAAGACGTTTCCTTCGGGAAGGCCCACTTACG
AACTTTTTATTGCTTCGACGTGAAGAAGCACCATTACGTCGCATTTGTTC
ACAACAGTGGGAGGGGGGAGTGGCTGCTGCTGGATGATGACAAGGCAATT
CCG
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