mRNA_A-nodosum_M_contig925.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig925.6.1
Unique NamemRNA_A-nodosum_M_contig925.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.010e-32
Identity = 110/336 (32.74%), Postives = 167/336 (49.70%), Query Frame = 1 
Query:    4 LGTGEDARIFLELLSRVEY-PDIALNGNPWECPPAPVVDKGIGPMKKYYNELERADPV-----LIDSRKVVFIGHSGAGKTSLIKSI--KAGKGRLAQEEELESVGVSVHDHRFETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEK-----LADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFLAKLLAWLRRSPSIEAVMADAAILVRDKHEEWKNERRTDPIGRTSIDEGLQMECGIQLVSSSPTLPYLKSGLPDLRERLKECGEGTRWLIPPSWRLALVVLDAVRDGLNPSYLR*NAAGCPWNHFDFTGKV 972
            LG  E A  F+  L ++    ++ L  NPW  PP  +V++G+  ++KY  ++  A+        ++  KVV IG  GAGKTSL+ SI  + G   +   EE+ +VG+ +  H    G      V+ YD AGQV+ YG+HQ FLT RALY+LVWD S+  G+E       +++++  WL  LHLR P S VLL     D          L  ++  + ++E+         R + +EW+  R++  + + +I   LQ      LVS          GL ++  R+   G  T  ++PPSW LAL  LDA+RD  +P       A   + H DF  +V
Sbjct:  318 LGQAEQALQFVARLGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKTSLLNSIVNERGSRTVGTSEEVSTVGIELRRHHQRNGRI----VEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVANKCD--------GSLQEFVGTAGAVESS-------ARRQLQEWQGNRKSPGVTKLTI---LQQP---SLVSCDDG-----GGLSEVIARVDAQG-ATSIVVPPSWGLALAFLDALRDSRDPE-----PATRRFLHLDFDAEV 617
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.130e-31
Identity = 105/313 (33.55%), Postives = 156/313 (49.84%), Query Frame = 1 
Query:   19 DARIFLELLSRVEYPDIALNGNPWECPPAPVVDKGIGPMKKYYNELERADPVLIDSR-----KVVFIGHSGAGKTSLIKSIKAGKG--RLAQEEELESVGVSVHDHRFETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQ-----EEKLADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFLAKLLAWLRRSPSIEAVMADAAIL---VRDKHEEWKNERRTDPIGRTSIDEGLQMECGIQLVSSSPTLPYLKS-GLPDLRERLKECGEGTRWLIPPSWRLALVVLDAVRDGLNP 909
            +A   L  L+R     I L GNPW  PP  VV+KG+  ++ Y  ++ +A+    + +     KVV +G S AGKTSL+ SI  G+G   +    E+ +VG+ +  H  +     GT V+ YD AGQV+ YG+HQ FLT RALY+LVWD  +  G+     +E +  ++  WL  LHLRAP STV+L     D                   SIE     AA++   V    +EW+  R     G +S     +M+  + ++  S  +  L   GL ++ +R+          +PP+W LAL  LDA+RD  +P
Sbjct:  163 EAEHALRWLTRRSECLIVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRGLPTVGTPAEVSTVGIELLRHNLQ-----GTAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCDG------------------SIEDFTGTAAVVEERVAVLRKEWRKAR-----GFSST----RMDMDMTVLERSSLVSCLDGVGLQEMIDRIA-AQSAASMRVPPAWGLALTFLDALRDSRDP 442
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.090e-25
Identity = 104/324 (32.10%), Postives = 152/324 (46.91%), Query Frame = 1 
Query:    1 GLGTGEDARIFLELLSRVEYPDIALNGNPWECPPAPVVDKGIGPMKKYYNELERA-----DPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQ--EEELESVGVSVHDHRFETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEE---KLADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFLAKLLAWLRRSPSIEAVMADAAILVRDKHEEWKNERRTDPIGRTSIDEGLQMECGIQLVSSSPTLPYLKSGLPDLRERLKECGEGTRWLIPPSWRLALVVLDAVRDGLNPSYLR*NAAGCP 942
            GLG  EDA   +E L    Y    L+GNPW  PP  VV+ G+  +K+Y  ++  A     D   +   KVV +G + AGKTSL+ SI AG+G   +    +  +VG+ +   + +      T V+ +D AGQV+  G+HQ FLT RALY+LV D +++ G ++    + D++  WL  L+LRAP STV+L     D  +   F        RR   + AV              W   R      +  + + L +  G+  VS         SGLP L   +      T   +PP+W LAL V+ A+R   NP     +  G P
Sbjct:    8 GLGETEDALRLVERLGDSLY----LHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQD-----TKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKYHGVDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSI-DKFAETAERIQRRVRELVAV--------------WHEARGLRGRSKGHVTD-LTLLPGMSRVSCQEKGSPEASGLPALIALISRQA-ATAIHVPPAWDLALEVIGALRASCNPIAAARDKLGLP 305
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.000e-17
Identity = 95/335 (28.36%), Postives = 143/335 (42.69%), Query Frame = 1 
Query:   34 LELLSRVEYPDIALNGNPWECPPAPVVDKGIGPMKKYYNEL-ERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEELESVGVSVHDHRFETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQF--LGQEEKLADNLND------------WLATLHLRAPRSTVLLCCTHKDKLVPGNFLAKLLAWLRRSPSIEAVMADAAIL-VRDKHEEWKNERRTDPIGRTSIDEGLQMECGIQLVSSSPTLPYLKSG--------------------------LPDLRERL----KECGEGTRWLIPPSWRLALVVLDAVRDG 900
            L L  ++E  +++L GNPW+ PP  VV  G+     Y+ +L E    V  +  KVV +G  GAGKTSL +SI++ K          +V + V +   + G++    +++YD AGQV   GL Q FL+ RA+ +LV +   F   G      + LN+            WL +L  R P S V+   T  D                R+  +  VMA+   L +R    EW   + T           +++E G+ L S  P+ P  + G                          LP L  R+    K    G   ++P SW +ALVVLDA+ +G
Sbjct:  334 LTLFRKLER-NLSLEGNPWKEPPEAVVKTGMAAASAYFADLFEEGVSVRRNMIKVVLVGQEGAGKTSLRQSIRSRKPTPTSGPAESTVQIDVEEIEMDDGVS----LRIYDCAGQVAYTGLLQMFLSPRAVTLLVCNTEAFGERGGYPAGGNPLNEDLYKLQELRVCSWLRSLSFRIPDSDVVAVATKCD----------------RAAGMAVVMAERMELAIRKWLREWSRSQMT----------AVRVEDGVSLTSCVPSAPQERDGIALGKRKSPEDSMWACDWRQDTPGEPLPSLLHRVIYNSKGHIRGAALVLPRSWNIALVVLDALGNG 637
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6P4XU04_BRABE (Ubiquitinyl hydrolase 1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XU04_BRABE)

HSP 1 Score: 95.9 bits (237), Expect = 4.940e-17
Identity = 66/231 (28.57%), Postives = 115/231 (49.78%), Query Frame = 1 
Query:   82 NPWECPPAPVVDKGIGPMKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEELESVGVSVHDHRFETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFLAKLLAWLRRSPSIEAVMADAAILVRDKHEEWKNERR---TDPIGRTSIDEGLQMECGIQLVSSS 765
            NP   PP  V  +GI  +++Y++EL R++  +    KVVF+G + AGKTSL++++ +GK  L +EE+       V   ++ET        ++YD  G    +  HQFFLT  A Y+L+ +   +   EE+  + +  WL TL+ R P + V +  + KD              L R   +E    D    ++ + E W+ E+R   T  IG+  I   + ++ G++++  +
Sbjct:  419 NPLIKPPTEVCRQGIAAVRQYFDELARSEERISAHMKVVFLGETMAGKTSLVRTLCSGKSTLTEEEDRTHC---VEITKWETN--DNITFEVYDFGGHDVYHLTHQFFLTPDAFYLLLVNLQTYRCSEERYTEAVGFWLDTLNARVPGAVVSIVGSKKD--------------LCRPEEVETKTKDVQARIKLQSEMWEKEQRQIRTIDIGQHQIRGKILLKPGLRIIGDT 630
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6P4ZR76_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZR76_BRABE)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-15
Identity = 81/302 (26.82%), Postives = 140/302 (46.36%), Query Frame = 1 
Query:   67 IALNGNPWECPPAPVVDKGIGPMKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLA-QEEELESVGVSVHDHRFETGLAGGTDV--KLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFLAKLLAWLRRSPSIEAVMADAAILVRDKHE-------EWKNERRTDPIGRTSIDEGLQME-------CGIQLVSSSPTLPYLKSGLPDLRERLKECGE-------GTRWLIPPSWRLALVVLDAVRDG 900
            + L+GNP   PP  V ++GI  ++ Y +EL+R++ V+    K+V IG S AGKTSLI ++  GK  L   ++    V +           +   DV  ++YD  G    Y  HQ+F+T+  L ++ +D   ++  +   A  +  W+ T++ RAP STV +  TH D L     + K      +   +E+ +    + ++D+ E       +     + DP  R +++  L ++         +  VSS+  L     G+ DL++RL    E         R  +P +W L    L+A R+G
Sbjct:  185 VRLHGNPLTQPPTEVCEQGILAIRAYQDELQRSEAVVTPRLKIVLIGESLAGKTSLINALVEGKSNLTGMQDRTHCVNI--------VRWSPSEDVVFEVYDFGGHEVYYMSHQYFITDGGLNIVTFDLHAYVSDDFDKA--VGTWVKTVNTRAPGSTVWVVGTHSD-LCEDEEIKK------KCGDVESKLQTLCVQLKDEVEVQIKRLQDGGEGDQRDPRIRETLEHLLYLQQHPLRVATSVSAVSSAEEL----RGIVDLKDRLSLLVEKEADLYPSLRRALPKTWSLMEGELEAQREG 465
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6P4XPW3_BRABE (uncharacterized protein LOC109462063 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XPW3_BRABE)

HSP 1 Score: 89.0 bits (219), Expect = 8.940e-15
Identity = 57/173 (32.95%), Postives = 91/173 (52.60%), Query Frame = 1 
Query:   79 GNPWECPPAPVVDKGIGPMKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEELESVGVSVHDHRFE-TGLAGGTDV--KLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFLAK 588
            GNP   PPA V D+GI  +++Y+ ELER+   +    KVV +G + AGKTSLI+++++G+  L   ++          H  E T  A   ++  ++YD  G    +  HQFFLT  A ++L+ +  ++   EE    ++  WL TL+ R P + V +  + KD    G   AK
Sbjct:  619 GNPLIKPPAEVCDQGIAAIRQYFEELERSKETISAHLKVVILGETMAGKTSLIQTLESGESTLTNVDD--------RTHCVEITQWAPDNNITFEVYDFGGHDVYHLTHQFFLTPDAFHLLLVNLQEYSCNEESYKKHVGFWLDTLNARVPGAVVSIVGSKKDLCQAGEVKAK 783
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A8I2K6A8_9BACT (Roc domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A8I2K6A8_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.530e-14
Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 1 
Query:   49 RVEYPDIALNGNPWECPPAPVVDKGIGPMKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEELESVGVSVHDHR----FETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKD 558
            R  Y  + L GNP   PP  +V KG   +K Y++E+ERA  + ++S K++ +G    GKT+L+K +K    ++   +E  + G+ +   +    F  GL+   ++  +D  GQ  L+  HQF LT+R+LY+ VWD      ++E+   + + WL  + L    S +++     D
Sbjct:  250 RFYYNGLNLYGNPLIDPPEEIVKKGNDAVKNYFDEIERASVLFLES-KLLLVGSGDVGKTTLMKKLKNKHFKVVPGKEDTTRGIDIQPWQLPCPFPDGLSRDVNIHFWDFGGQDILHATHQFLLTKRSLYLFVWDP-----RKEEETRSFDYWLNAVKLLGAGSPLIMVMNKAD 417
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BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6P4Y619_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y619_BRABE)

HSP 1 Score: 87.4 bits (215), Expect = 2.250e-14
Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 1 
Query:  109 VVDKGIGPMKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEELESVGVSVHDHRFE-TGLAGGTDV--KLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKD 558
            V D+GI  +++Y++ELER+   +    KVV +G + AGKTSL++++ +GK  L +EE+          H  E T LA   ++  K+YD  G    +  HQFFLT  A Y+L+ +  ++   E+    ++  WL TL+ R P + V +  + KD
Sbjct:  315 VCDQGIAAIRQYFDELERSKEAVSAHLKVVVLGETMAGKTSLVRTLNSGKSTLTEEED--------RTHCVEITQLAPDNNITFKVYDFGGNKVYHLTHQFFLTPDAFYLLLVNIGEYTCSEQSYQKHVGFWLDTLNARVPGAVVSIVWSKKD 459
[Close]
BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Match: A0A6P4Y5Y3_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5Y3_BRABE)

HSP 1 Score: 85.5 bits (210), Expect = 9.870e-14
Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 1 
Query:   79 GNPWECPPAPVVDKGIGPMKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEELESVGVSVHDHRFETGLAGGTD---VKLYDLAGQVELYGLHQFFLTERALYVLVWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKD 558
            GNP   PPA V  +GI  +++Y++ELER++  +    KVV +G + AGKTSL++++ +GK  L +EE+          H  E      TD    ++YD  G    +  HQ FLT+ AL +L  +  ++   EE     +  WL TL+ R P + V +  +  D
Sbjct:  417 GNPLIKPPAEVCRQGIDAIRQYFDELERSEEAVSAHLKVVVLGETMAGKTSLVQTLNSGKSTLTEEED--------RTHCVEITQWAPTDNITFEVYDFGGHDMYHLTHQLFLTQGALNLLTVNLQEYRCSEECYTQAVGFWLDTLNARVPGAVVTIVGSKMD 571
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig925.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX5_ECTSI1.010e-3232.74LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE3.130e-3133.55Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE1.090e-2532.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME6_9PHAE2.000e-1728.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4XU04_BRABE4.940e-1728.57Ubiquitinyl hydrolase 1 n=1 Tax=Branchiostoma belc... [more]
A0A6P4ZR76_BRABE1.180e-1526.82malignant fibrous histiocytoma-amplified sequence ... [more]
A0A6P4XPW3_BRABE8.940e-1532.95uncharacterized protein LOC109462063 n=1 Tax=Branc... [more]
A0A8I2K6A8_9BACT1.530e-1429.89Roc domain-containing protein n=1 Tax=Candidatus A... [more]
A0A6P4Y619_BRABE2.250e-1433.99malignant fibrous histiocytoma-amplified sequence ... [more]
A0A6P4Y5Y3_BRABE9.870e-1433.13malignant fibrous histiocytoma-amplified sequence ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig925contigA-nodosum_M_contig925:120990..129900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVX5
Preferred nameSLITRK2
PFAMsLRR_8
Model size1508
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons5
Evalue2.46e-28
EggNOG OGs2CMPC@1|root,2QR6C@2759|Eukaryota
Descriptionpositive regulation of synapse assembly
Cds size792
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig925.6.1prot_A-nodosum_M_contig925.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig925 121122..128846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870396.721482-UTR-A-nodosum_M_contig925:120989..1211211680870396.721482-UTR-A-nodosum_M_contig925:120989..121121Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig925 120990..121121 +
1680870396.7873123-UTR-A-nodosum_M_contig925:128846..1289731680870396.7873123-UTR-A-nodosum_M_contig925:128846..128973Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig925 128847..128973 +
1680870396.8023336-UTR-A-nodosum_M_contig925:129443..1299001680870396.8023336-UTR-A-nodosum_M_contig925:129443..129900Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig925 129444..129900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870396.7328885-CDS-A-nodosum_M_contig925:121121..1212191680870396.7328885-CDS-A-nodosum_M_contig925:121121..121219Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig925 121122..121219 +
1680870396.7445993-CDS-A-nodosum_M_contig925:127411..1276491680870396.7445993-CDS-A-nodosum_M_contig925:127411..127649Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig925 127412..127649 +
1680870396.7573662-CDS-A-nodosum_M_contig925:128344..1287851680870396.7573662-CDS-A-nodosum_M_contig925:128344..128785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig925 128345..128785 +
1680870396.7745478-CDS-A-nodosum_M_contig925:128831..1288461680870396.7745478-CDS-A-nodosum_M_contig925:128831..128846Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig925 128832..128846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig925.6.1

>prot_A-nodosum_M_contig925.6.1 ID=prot_A-nodosum_M_contig925.6.1|Name=mRNA_A-nodosum_M_contig925.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=264bp
MKKYYNELERADPVLIDSRKVVFIGHSGAGKTSLIKSIKAGKGRLAQEEE
LESVGVSVHDHRFETGLAGGTDVKLYDLAGQVELYGLHQFFLTERALYVL
VWDGSQFLGQEEKLADNLNDWLATLHLRAPRSTVLLCCTHKDKLVPGNFL
AKLLAWLRRSPSIEAVMADAAILVRDKHEEWKNERRTDPIGRTSIDEGLQ
MECGIQLVSSSPTLPYLKSGLPDLRERLKECGEGTRWLIPPSWRLALVVL
DAVRDGLNPSYLR*
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mRNA from alignment at A-nodosum_M_contig925:120990..129900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig925.6.1 ID=mRNA_A-nodosum_M_contig925.6.1|Name=mRNA_A-nodosum_M_contig925.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8911bp|location=Sequence derived from alignment at A-nodosum_M_contig925:120990..129900+ (Ascophyllum nodosum dioecious)
GGATTGGGAACGGGTGAAGACGCGCGCATCTTTCTTGAGCTGCTGTCGCG
CGTGGAGTACCCGGACATTGCTTTGAATGGCAATCCATGGGAATGCCCAC
CAGCACCTGTGGTCGACAAGGGCATAGGTCCAATGAAGAAGTACTACAAT
GAGCTCGAAAGGGCGGACCCGGTCTTGATCGATTCACGCAAAGTGGTGTT
CATCGGGCACAGCGGAGCTGGAAAGACCAGGTGCGTTGAAGATTGGAGCA
GAGTTTCAACGACACTAGTGATACTTTTGTTCGAGTCAATGAAAAACTGT
TGTAGTACCTACACACCAGCTCTGAAGTGCGAGGTGGCTTGGCCAGGACC
TCGTGCACTGTCCCACGGCCCTCTCCTCCCTCAGAGGGCTGCCTGTCATG
CCTGGTACTGGTATATTTACGGCCCGAACGTTTTGGTTATTTCCGGCTCC
TGCCCCTATAATATTATAGAACCATTACTACGTGGTAATTATACCAGGAA
CATTCAGAATGCCCAAATTGATTCAAAGCCGAAAGGAGAAATCCTGTTCG
CCGACTTAGAAACAGAAGTAAAAAGAAAGGTGTTTCAATAGGGGATTTTT
CAGTCTTATCGCTTTCATCCCCCAACAAACTCGCAACGTGCGATAGAGCC
TACTGCAAAACTACCGCTCCACCTGGGAACGGCTGGTAATGCACGGGGTA
GAACTTGACAGTGGTCCCGGGGTGCCAGCCATCACTCGTCGAATAGGCAT
CTATTTCACCAAATTCCATACCAGCCAGGGGGGGAGGGTCCCCTCTTGAA
GTAGCTGTAATAGATGAGCGAGAAAATATACGATAGCTCGTCCTGACGAC
CACGCCCCAGTGCTATCATGATCCTTCTTCAGGGTTAGACATAATAATAT
TGCGCATGACTCTGCTTACCATGAAGTCTATCTTTATCATAGGAGACAAA
GGTTGCATTAGTTTGCTGCGGTGAAATGTCACTATTCTAGCAGACTCAGT
CAGATTAAAAAAACAGGTACTTTTCGGGAAGCCTCGAGCGACATTATAAT
ATCATCGCTGCAAACTATCAACAACTTGCCTAGAGACTTCGCGGCCGCCT
CTCGTTGCACTCAGGCCACGCCCCAAAACAGGTGCCTGTTATAGAAAAAT
GTCCTTGTCCCCCCAAGGTTATGGGTTCACCAGGCTTACGTCGCCAATAT
AGCATATGCGGTTGCCAATCCGGCATACCCCGGCTGCCTCCCGGCCGGGG
TGGACCCAGACCGTGGAAGTAAGGAGACGGTAAAGAATCGATGCGTGTTG
TGACTACAACGGCATAGCCGATGGTATCGGCGGTGCACTGTCAGTTGAAT
CCATAAGGCAAACCGTTCGTACCAACGGTCATGGCACCAAAACTGGCGTA
CCGCCGCGGAACGCGAGAGGGAGGAGAGGAGCCAGTGGGTAAGCACCAGA
TTCGCTCCGGAGACGGAATATGGGCGGGGCCGGGCGGGGTGGGACAGCTG
GACCCACGTCGAGAGACCAAAATACAACGCAAAAACGGAGACAGGGAAAG
GGGGATAATATAAAAAGTCACAGAAAGGAGAAAATTATTGGCGCGCAAAC
GGAGGCGACGAGGCAGAGCAGAGCGGCGCCTCCTGCGACAAAGCGAATCG
AGGAATAGAGCACGTGCGCGTGGACGGGAGATCACAGTTGCCACGCACAA
CGTACGGACGATGGCGGTGGATGGGACGCACAGAGTTGGACGAGCGCTAG
ACGTTTTGAGTGTGTACGATCGAGTGGGGTGCGACATCATCGATCTGCAG
GAGGCCCGCCGCAGCGGACACTCATCTTTCAGCTAGGTTGGCTAATTGGT
GTACTGCAGCGGTGAGTGCGATGGCGGAAATGGTGGGAAGAAAGAGCAAG
GTGGAGTAGGACTAGCTGTGAGAACCCCCATCACACGTGCCGCACGCCCA
CCGGAGTTTATCAGTGATCGCTTATTAAAGGTTACACTTGGACTCCGTGG
TTGGGCCAAGTCGGTTACGGTTTTTGTGGCGTATGCCCCGACTGAAACAC
AGAATGCTAGCAATAAACATGCATTCTGCACGAGCTTAGACAGAGCTGTG
GAGGAGGTGCCTAAACACGAACAATTGTTTGTGTTGATGGATGCCAACGC
CCGCACGGGGAGGAGGGAGAAGGGACAGGTGGGGAGCAAGGACAACAAAC
TTATCGGGGCCTACGGCCGAGATACCCTCAACGACAACGGAGAGCTACCG
CTGTTCTTTGCTAACAACCATGGTCCAGCTCTTGTGAACACGTTCTTTAG
CACACCCAAGGACGGCGTATCACATACTTTCAACGGGCGAGGCAAAAAAC
GTATTGGCTACATCCTAACGAGACAACGTGATCACAAACTCGTACGGAAC
GTTGCGATGCACCCTCAGCCCTCATTCCTTCTCATTTCGAACCACAACAT
TGTGTCCGCTCCCATCAAGCTCCCTGACCATTTTGCCCGAAGCCGCCGGT
TGAGGGCCTCAGCTAAGCCACCAGTCAGGCCGTAGGGTCCTGGTGGCTGA
TCCCCAGCTTCGACAGGAGGTGGCCACAGCGGTTGGAAGGCACCTCAGGA
CAAACCCTCCCGGAGACAGAAGTGTGGACGACGTGGAAGCCGCAATCGCC
GCAGCCATCGTGCGGACCGCTGAATTGGTGATCTCACCCCAGGAACGAAG
GAGACCAGAGCGAAGTTGAAGAGGAGACGCCCGAAAGGAAGCTGAACTGC
AGACTACGACTGATGCGATGCACGCAGCGTGGCAGCGCCTGAAAATGGAC
ACAAGGGACGCGCAGCTGCGGGGGGCCGACAGGAAGGCATGTAACTGGCT
GAAGAGAGTGTGAGGTGCAGCAATCGTTTGTTTATTCGAGCGCCACGTCG
TTGAGTTGGAAAAGCAGCTGCGCATGGGAGACCAGCACGGATTCTCTTAA
AACATCAAATCGGTGCAGCTGGAGAAGACGAAGAAGGTCGAATCACAGTG
CATCCGTGATGAGGAAGGGAGACTGCTGCGCGACAGAGGGCGTATCCGCG
AGAGGTGGGTGCGATTCTTCCGCTCGCTGCTGAACGCTAAGTCAGACATG
CTCGATCCCAACATCCCGAAGAGGCTGCCGTCGCATCCAGTCGCGAGTGC
CCCCGGGATCGAGCCCACGGCGGGAGAGATTGCCACGGCGATGAAGGCAA
TGGCAAACGCGAAAGCAGTGGGGCCGGATGGCCGGCCTTCCCACGGAACT
GCTGAAACTCGGACTTCAACAAGGCCGAACTATCGGAACTCCACCGGCTT
ACGACCCTCATCTGGCACAAGGGAAACGTCCCATAGCAGTGGAAAGACGC
GGTCAGTACCGTACTTCACAAGAAGGGCGACAAGACAGAGTGCGGAAACT
ACCGCGGCATCTTGCTCGTGTCACGCGCGGGTAAGGTTCTCCTTAATTTA
AAGTGGTTGCCAGGAGACTCAGCGCTTATTGTGAGGCGAAGGGACAGTTA
CCGGAGGAGCAGTGCGGGTTTCGACCAGATTGTTCGACCACGGACATGAT
GTTTGTGGTTCGCAGGCTGCAGAAAATTGGGCGGAAGGCAGGAGTGTCTC
TCTTCCCGTGTTTCATAGATCTCCAAAAGGCGTTCAAAATCGTTGACCGC
ACCCTCTTGTGGCGGGTACTCAATCGCATCGGAATATCACCGCAGATGAT
AGCAGTCATCCGACAATTCCACGATGGGATGAGAGCTTGTGTGCGACCTG
ATGACGAGTGGTTCAACGATTGGGGGGGTGGGGAATGTCGCAAATTTGTC
CCCATTTGGATAGGAGACGGTACGAAAATGGCCCCTCCTGGGGACATATT
TGACCAACTCCCTGGTGAAATGAATTTACTTCGCGTTAAGCTTGCCGACC
ATCTAGAGGAACATGCAGTCCTATCCCCGGAAAGGGCTGTTTAGGTGACC
TCCCCGGGGACGGAATCATGGTATCCCTGCCCCCCTCAATCGTTTAACAA
CTCTGACGGCGTCTGTTCGGATTGGTTTGAGGTGGAGCAAGGACTACGGC
AAAGATGCGTGTTATATCCGCTGTTGTTCAACATCTTCTTCGCAGCCGTG
CCGGACATTGTCCTCCAAAGATTCAGCGAGGATCCGACCATCCTCGCCGT
GCTGGTGCACCTGAAAGAGCCCTTGACGTCGATGGGACCGGGGCCGGCTA
TGGACTACGTTCGTCGTGCGGTGTGGGGCATGCTATACGTGGATGACGCC
TGCATAGTTTCGCGATCGCTGCAGGGGCTCGCTAAGATGATGGAAGTTAT
CGTGGAAGTTTGCCGAGCCTTCACGTTGACCGTGTCGGCGAAGAAGACAG
AGACCGTGTGTATGCCTCCACCGCGTACACCGCGGACGATGGTGCGAGTC
GAAGCAGCCGGGCAAATCTACAAACACGTGGAATCCTTCACCTACCTAGG
GGGCGCCGTGACCGAAACCCCGGACATGTTTGTTGAAATCGCCAGGTGGA
CGCGCGCATGCTGGATGCGCATCAGGCGTTACCTATGTAAGCTCTACGGC
CAACCGAAAGTAGAGCTCTCCCTCAAGACTCGAATGGTAAAGACCGAGAC
GATCGAGGCCCTTCTGTGTGGATACAGTATGTGGATCCTCCACCAGGAAC
ACTACGCCAAACTCCGCACCGTACACCATCGGGTCTTGCTTTGCATCATC
GGTGCACAGCGCAAGAGACCAGACCATCGGATGACCTCGTACAATCGTGC
CCCTGAGATAACCCGGTGCGAGAGCATTGAGACGACGTTGCGTACGAGAA
GGCTTTTGTGGCAGGGGCGTTCATCCGAATGAACGGCGGGCGTCTGCCAA
AGCGAATCGTGTTCGGAAACCTTGAGGGTGCAGTGTGGAGAGGACGGGGT
GGGAAGGAGAAAGAGTGGGCCGATTGCGTACAGAGCGACATCCGGGCGTT
TGGCATAGCGGGGGATTGGAGAGCGACGGCGTTTAAGGCTGAGTTATAGG
TTGAGACGATCGCGGAGGATCGGCGGAGGTTCATGGCCGCGTGGAAGAAA
TACGATGTAGACGCGGCTAGACATCGCCAGGAGAATAGCGAGGCAACGAG
ACTGGGAAAGTTGTTATCGCACACGGAAGCGTAGAATTTTGCGAAGCGAA
ACCCATTGGCCTAGCCGACGAGTCGAAGAAATCTTTGCACGGACGCGAGA
CGAACCGAGACCTGCGTAGCCCCTAGGCATGTAGACGCGTAACGTGATTT
TATTTTATTTTTCTCCGAACGAGCAACGTGGGGGGGGGAGTGGGCGCGCT
GCCAGCCTTTTTTTTTTTTTTTCCTTCCCTGTACAGCAGATCACGAGCGG
ATTGGCCAACGTGTAAAGTAGACTTTTCGGGTTGGCAACCAATACGCTGA
GTGTGAGAAACAACAACAACTGGGGGATGCTCAGAAGATCTAGGCGCGTT
CAATTTTTTTGTTAACATTTGAGCTATTCATGTTTAGTCTTGGAAATCTT
GGAAATCGATCGAACATATTTCACTTCTTCAAAGAGTTGTATGCTCTCAC
CACTCTTGCAAAGGTAGAGAGCATATTTACCATCCAACCGAATCTCATCC
TGCGACTGTGACCCACCATGGTCATTGGCAAGAACGACCGGGGCTTTATT
GTTAAAGGACCACATTAATAGGTGGGGTAGCCTAGGTATTCTGAGGATTA
GATCGGGCGCGCCACGAGGTTTCCATCACGATTTCGCTCATGCAAGCTTT
ATTTTTATAGTTGCGTGTCCCCACCAAGCTCTGGTAAACAAACGAGGTAC
TTTAGAAGAATGTGTGGAGGAAATGACGGACCACTATAGTCATGCAGAGC
CTCTTCTTCTGTCACTTGTCATTCCATAAGCGTGTAACGTGAGACCCAGC
TCCGAATGTGGCGCTTATCTCGACTGCACAAAGTCATATCGCCGTCACGA
AGTAATTCTCGTCTGGTACATTTGTGCATGGCATCTCCACCTTGGTTGGC
ATACAATTGTAACGATGAGATGCTGAAGTGATCCGTTAGGTTTACCCTGT
GAAGTGTATACTTTCTCTTGACGGGCCAGCGTTTGGTGCGTATCCGAGCC
TGGTTTTCCTTGGGGAAGCGGGAGGTCGCTCAGGAATATTCTTACTGTTG
ATGATCTACAATGTTATATTCCTTTTACTAATGGCCTAGGTATTGTTGCG
AGTGATATCCATGAAGTCTACGAATAATACCGTCCACGCCTGCGAGTACT
GCGCCGAAAAATCACAGTTGATCTTTGTTCAAGGCAGTCAACGTCGAGTA
CTGTACCGGGTACATCCTTCACTTATAAAGTTTAATGCATATCTGGTAGT
TAAAAATCTATATATGGTACGTGTATTTCCTCCCCCATACCTGTACGCGA
TGGTCCCCATACCGCTCTGAAGTCTGATCAAGAGCATCAAGGCCGGGAAG
GGGCGACTGGCTCAGGAGGAAGAACTCGAATCTGTTGGAGTGTCAGTTCA
TGATCACAGGTTTGAGACTGGACTTGCAGGTGGAACCGACGTGAAGCTGT
ACGACCTGGCAGGCCAAGTGGAGTTATACGGTCTGCACCAATTTTTCCTA
ACGGAGAGGGCTCTGTACGTGCTGGTGTGGGATGGGTCTCAGTTTCTGGG
TCAAGAAGAGGTGAGACAGTAGGCTTTCCTAATGACTATGAGCCCATTTC
TAGTGTACAGCACATGCCAACCTATTTAGCATTATTTCCTTAACCGGCAT
CCGTTGGCCAAAGCACACAGGAACGTCAACCGGCGTAAGCCAGCCTTGCT
TAGCTCTGGCCCACCGTGTGTGGTTATCATTGAAGCAGACATAACTTGCA
AATCCACCCCCCCGTGGGTTCTAAGCCTATTAATAGCGATTTCTTGTCAG
AGCGCTACCAACACCATAACGTAGTGACACTTTCACACCACGCGCAGTTA
GTCGTGAAAGCTTGCGTTGCTCGGGGAAAAGAAGAATTTGTATACTAGGA
AGGGTCATCGGTCTGTTGTTTGTGGATTATATGTTCGCCACGCATATTAT
TAGTGATGACCCGCTCAATTTCAGCGGTTAAAACTCTACTAGTTACACAA
TGGATATATTTCCTTCCTTCTCGCAGAAAAACGACGGTCAAACAATAACA
CGACGGGTACAGTCTGCCGGAAGTCGTAAGGCGTAGGAGTAAGAATCATG
ATAATTACCCGCCCATAAATGTATCCCGCTGCGAGGAACAGGGATCGGGA
TATCTGTTTTAATGTTCGTGAGAAAGCATGTTATGCCGTTTCCTGCTCGT
CTAGTCGATCTCCTCGTGATCACCGCATTGCCGTATCTTGTTTATTTCTT
TTCAGAAACTTGCGGACAACTTGAACGACTGGCTGGCAACCCTGCACCTG
AGAGCTCCCCGTTCAACGGTTCTCCTTTGTTGCACACACAAGGACAAGCT
TGTTCCGGGGAATTTTCTAGCAAAACTATTGGCGTGGCTAAGAAGATCTC
CGTCTATAGAAGCAGTCATGGCGGACGCTGCGATTTTAGTCAGAGACAAA
CACGAGGAGTGGAAAAACGAGCGTAGAACAGACCCCATTGGAAGAACATC
GATTGACGAAGGTCTACAGATGGAATGTGGGATTCAGCTCGTCAGCTCCT
CTCCAACTTTGCCTTATTTGAAGAGCGGTTTGCCCGATCTACGAGAGCGA
CTGAAGGAGTGTGGGGAGGGCACGCGGTGGTTGATTCCGCCATCGTGGCG
TCTTGCCCTGGTGGTACTAGACGCCGTGCGAGATGGGCTCAATCCTGTTG
AAGCTGCACAACGCTTCATAAACCGAGAAGACCCGCTTTCAGTCGTATCT
GCGGTGAAACGCAGCTGGATGTCCTTGGAACCACTTCGACTTCACTGGAA
AAGTGTCCAAGACTCTGTTGACCTTCCGGCGGGACTCAAAGCCGACGATT
CTGATTTTGCGCTAGATAGCGCAATGGACTTAAGGTGAGCGACTGTCGCA
GATGCGCTTCCACGTGGTACTCGTTCAAAGAATGCTTAAAAGAGAGTTCC
CCTCCAGCGAAATTGCATGTGCTCCTTAACCTCATCTCTTATGGGAAATT
TTTATCACAAATAGAGCTCTTAAAGACGTTACTCGTCCTTCTTACACCTG
CTGATGTACAGCCAAGGCAGTCGAAGTCCACTGCTCACTCAATCCTTCCT
ATACCCGATCATATAATACGTTAGAATGTTACAAGCTTTCACGACCTTAG
GACGTAACATGAGAAACGAGTACATTTGCATGCGCCTTCAAGACCACTGA
TAAAAAGCGCCGATGGGGTTTCGTTATCGGCATAGCTCTAGTAGTGCACT
TATCGGTCACGTAAATCACTAGACAAATAATTTGTCGATAACTGCAGCTC
TTGCATTTTTTTCGCACCATGCGGTCATCTATGTTGTTTCCATCCAACCA
TCAGAGAACGCGGAGGTTCGCTTCTTAAACATCGTGACGTAGTGTTCTTG
GATGTGGAGGACTTCGCGCTTTCGCTGGCCCCTATTCTCAACCACAAAAT
ACAGCAGCGAGACGCACGTGGAGCGTACTTTTTCGCGGAGCGCAAGCTCG
ACTCCCAATGGAAGTTGGACGCCAAGGCGCGACTCGTGAGCAAGGGAATA
CTTGAATCTTGCTTTGCTAGATTCTTGTGGGGGAATGATGACGGGGCATT
GCCGCAGCAGACGTTCGACGTCCTTGTGAAACTTGGGGTTCTTCTACCCC
TGCCACAGAGACATGAATCAAGCGTGCATCGCGTTCCCTCAAGAGTCTGG
AAGGGCCCGACATCCTTGGAGCACATCAAATAGTTCTTGGTGTTGATGCG
ACTGCCGCTAAACGCCCCGTGTGAGGCCATGGACCGCTTCAATGCCTTCG
ATCAACTTCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig925:120990..129900+

>mRNA_A-nodosum_M_contig925.6.1 ID=mRNA_A-nodosum_M_contig925.6.1|Name=mRNA_A-nodosum_M_contig925.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig925:120990..129900+ (Ascophyllum nodosum dioecious)
ATGAAGAAGTACTACAATGAGCTCGAAAGGGCGGACCCGGTCTTGATCGA
TTCACGCAAAGTGGTGTTCATCGGGCACAGCGGAGCTGGAAAGACCAGTC
TGATCAAGAGCATCAAGGCCGGGAAGGGGCGACTGGCTCAGGAGGAAGAA
CTCGAATCTGTTGGAGTGTCAGTTCATGATCACAGGTTTGAGACTGGACT
TGCAGGTGGAACCGACGTGAAGCTGTACGACCTGGCAGGCCAAGTGGAGT
TATACGGTCTGCACCAATTTTTCCTAACGGAGAGGGCTCTGTACGTGCTG
GTGTGGGATGGGTCTCAGTTTCTGGGTCAAGAAGAGAAACTTGCGGACAA
CTTGAACGACTGGCTGGCAACCCTGCACCTGAGAGCTCCCCGTTCAACGG
TTCTCCTTTGTTGCACACACAAGGACAAGCTTGTTCCGGGGAATTTTCTA
GCAAAACTATTGGCGTGGCTAAGAAGATCTCCGTCTATAGAAGCAGTCAT
GGCGGACGCTGCGATTTTAGTCAGAGACAAACACGAGGAGTGGAAAAACG
AGCGTAGAACAGACCCCATTGGAAGAACATCGATTGACGAAGGTCTACAG
ATGGAATGTGGGATTCAGCTCGTCAGCTCCTCTCCAACTTTGCCTTATTT
GAAGAGCGGTTTGCCCGATCTACGAGAGCGACTGAAGGAGTGTGGGGAGG
GCACGCGGTGGTTGATTCCGCCATCGTGGCGTCTTGCCCTGGTGGTACTA
GACGCCGTGCGAGATGGGCTCAATCCTTCGTATCTGCGGTGA
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