mRNA_A-nodosum_M_contig9248.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9248.3.1
Unique NamemRNA_A-nodosum_M_contig9248.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9248.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9248contigA-nodosum_M_contig9248:5295..5798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size190
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870396.1813395-UTR-A-nodosum_M_contig9248:5294..52991680870396.1813395-UTR-A-nodosum_M_contig9248:5294..5299Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9248 5295..5299 +
1680870396.220997-UTR-A-nodosum_M_contig9248:5784..57981680870396.220997-UTR-A-nodosum_M_contig9248:5784..5798Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9248 5785..5798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870396.196194-CDS-A-nodosum_M_contig9248:5299..54061680870396.196194-CDS-A-nodosum_M_contig9248:5299..5406Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9248 5300..5406 +
1680870396.2094054-CDS-A-nodosum_M_contig9248:5720..57841680870396.2094054-CDS-A-nodosum_M_contig9248:5720..5784Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9248 5721..5784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9248.3.1prot_A-nodosum_M_contig9248.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9248 5300..5784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9248.3.1

>prot_A-nodosum_M_contig9248.3.1 ID=prot_A-nodosum_M_contig9248.3.1|Name=mRNA_A-nodosum_M_contig9248.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
MMGVVFMGIDALKRAAIGDLGASIECSEADYDFKGWLSKEENMAEKVIEE
KKPKHE*
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mRNA from alignment at A-nodosum_M_contig9248:5295..5798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9248.3.1 ID=mRNA_A-nodosum_M_contig9248.3.1|Name=mRNA_A-nodosum_M_contig9248.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig9248:5295..5798+ (Ascophyllum nodosum dioecious)
ACTTGATGATGGGAGTAGTTTTCATGGGAATCGATGCCCTCAAACGTGCA
GCTATCGGTGATCTCGGTGCATCGATCGAGTGTTCTGAGGCAGATTATGA
TTTCAAGGGCTGGTGAGTAAAAATATAATACTGCAGACACTTGGCGTGGG
AATGGGTCGGAACAGGTCTGACGAGAAGCAGGCCCAAGTAAGTACAGTCG
ATATCGTACCGGTAGTCAAGTGAATGCCCATGATGCTCTGGGTACTCCGG
GTCGGAGAGAACGGTAGAGGACGTTTTCCGATCTCTTTTTCATTTGGGGA
GATAAGGCCCAGTGGCTATCACAAGAGGTATAATTCTGCAACTGTGTAGA
GGAACGCCTCTGGGCAACGTGCTGACTTCCCACCCTCCCTGGAACTCGTA
CTCCGTCGCCATGTGTTACTTGACAGGCTTAGCAAGGAGGAAAATATGGC
CGAGAAGGTTATTGAAGAGAAGAAGCCCAAACATGAGTAATCTGAGATCA
CGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9248:5295..5798+

>mRNA_A-nodosum_M_contig9248.3.1 ID=mRNA_A-nodosum_M_contig9248.3.1|Name=mRNA_A-nodosum_M_contig9248.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig9248:5295..5798+ (Ascophyllum nodosum dioecious)
ATGATGGGAGTAGTTTTCATGGGAATCGATGCCCTCAAACGTGCAGCTAT
CGGTGATCTCGGTGCATCGATCGAGTGTTCTGAGGCAGATTATGATTTCA
AGGGCTGGCTTAGCAAGGAGGAAAATATGGCCGAGAAGGTTATTGAAGAG
AAGAAGCCCAAACATGAGTAA
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