mRNA_A-nodosum_M_contig924.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig924.3.1
Unique NamemRNA_A-nodosum_M_contig924.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 1.810e-143
Identity = 263/529 (49.72%), Postives = 347/529 (65.60%), Query Frame = 1
Query:    1 MYRRKKSNHSTFSFSGARRGGRGGARSHHNSDDLLGLSTSFGGLSLQQPEVI-IPLLSSFAFGEVAIAGPYVEVSEAVPKAESIPDSYGSTQNYLKAMQAHTQAEFRASIKEGIVMAHRKERNGWLPLTYGSRA---DHKGDFYVNGSPPKDNNPSRAS--NGHNFKTETWSRHVVQFHGEKTLALVVVCECSSGDHEARISLAPA-DKFGDARYRSKTLVRSLGYVGSFLREYGSAARLLQVRGESSNALLKTVSAPGRQ-RKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAFGVLVFGSENRLGTHAKEFTIDGRLRNDPELVFWRGVHETWTRASAKAKAVSWDRLHLPSFPGIERLEEIAQEGVEASINSMKNLQLEKKAKKGRAAGRWAFALKLILRVAYEKRLAKGTAAQRQTLKELRSLEKWQELVSRGRRRSRQIVSRLEDLTRYRLYTTTRVLICTVDSVE 1563
            MY R+ +N S  SFS +R   R G   H   DDL   + + G +S++    I IP LS+F+ G VA+AG  V V E VP AE IP ++ +   YLKAMQAHTQ EF AS ++G+  A R +  GWL LT        D +  +YV+G        +R +  +GHNFK + WSRH+V+F  + ++ALVV C     D+EA +++ P  D          T VRSLGYVGSFLREYGSAA LL  R + S++LL  V+APG+Q      + AG+F+P   V  LDTS V LNA Q++AV+ LTG LD++VGPPGTGKSTTIYHI ++R+  + RVL+TSIRNQAVDAV  KV +FGVLVFG+E RLG H+K FT+ GR+ ND EL+FWR   ETWT+    A+AVSW RLHLP+FPG+ RL  + QE ++++    K+ QL +    GRAAG+WAFALK +L+  + KRL  G+ AQR  L +L++L+KW  L+S G  R   ++ RLE LTR+R++T TRVLICTVDS E
Sbjct:    1 MYHRRWTNRSCSSFSASRTAARTGF--HRGDDDL---TRAMGRMSVRATSNIRIPPLSAFSSGAVAVAGSAVRVGECVPPAEDIPTNFRTPTAYLKAMQAHTQKEFEASARQGVSNADR-QGGGWLVLTCRPNPRWQDSRLSYYVHGKSENGGLGTRDTEEDGHNFKQDPWSRHLVEFE-DSSIALVVACGEGVTDNEAFLAITPGTDGIPVRSEHLHTRVRSLGYVGSFLREYGSAAELL--RRDESDSLLNAVAAPGQQCTLPSSSGAGTFLPRGQVRTLDTSSVPLNATQKDAVLSLTGGLDLVVGPPGTGKSTTIYHINESRIRAEGRVLITSIRNQAVDAVTEKVDSFGVLVFGNEARLGPHSKNFTMAGRMANDAELLFWRDARETWTKHLKSAQAVSWSRLHLPNFPGVARLFALEQESLKSTGTGKKHHQLRRS---GRAAGKWAFALKRVLKANFYKRLVNGSLAQRLMLHQLKALDKWVRLLSEGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTE 517          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A6H5JRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT8_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 9.960e-99
Identity = 217/528 (41.10%), Postives = 309/528 (58.52%), Query Frame = 1
Query:    1 MYRRKKSNHSTFSFSGARRGGRGGARSHHNSDDLLGLSTSFGGLSLQQPEVI-IPLLSSFAFGEVAIAGPYVEVSEAVPKAESIPDSYGSTQNYLKAMQAHTQAEFRASIKEGIVMAHRKERNGWLPLTYGSRA---DHKGDFYVNGSPPKD--NNPSRASNGHNFKTETWSRHVVQFHGEKTLALVVVCECSSGDHEARISLAP-ADKFGDARYRSKTLVRSLGYVGSFLREYGSAARLLQVRGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAFGVLVFGSENRLGTHAKEFTIDGRLRNDPELVFWRGVHETWTRASAKAKAVSWDRLHLPSFPGIERLEEIAQEGVEASINSMKNLQLEKKAKKGRAAGRWAFALKLILRVAYEKRLAKGTAAQRQTLKELRSLEKWQELVSRGRRRSRQIVSRLEDLTRYRLYTTTRVLICTVDSVE 1563
            MY R+ +N S  SFS +R   R    ++H  DD L  + + G +S++    I IP LS+F+ G VA+AG  V V E +P+AESIP ++ +   YLKAMQAHTQ EF AS ++G+  A R +  GWL LT        D    +YV+G       +      +GHNFK + WSRH+V+F  + ++ALVV C     D++A +++ P AD         +T VRSLGYVGSFLREYGSAA LL  R + S++LL  V+APG+      + AG+F+P   V   + +R+ L++       ++    +++       ++T   H+  A+     R+ + S            + A GV  FG+E RLG H+K FT+ GR+ ND EL+FWR    TWT+   KAKAVSW RLHLPSFPGI RL  + QE + ++    K+   +K  + GR AG+WAFAL  +L+  + KRL  G+ AQR  L++L +L+KW  L+S+G  R   ++ RLE LTR+R++T TRVLICTVDS E
Sbjct:    1 MYHRRSTNRSRSSFSASRTAAR---TAYHRGDDDL--TRAMGRMSVRATSNIRIPPLSAFSSGAVAVAGSAVRVGECIPRAESIPTNFRTPTAYLKAMQAHTQKEFEASARQGVSNADR-QGGGWLLLTCRPNPRWQDSCLSYYVHGKSENGGLDTQDTEEDGHNFKQDPWSRHLVEFE-DSSIALVVACVEGVTDNQAFLAIVPGADGIPVLSEHLQTRVRSLGYVGSFLREYGSAAELL--RRDESDSLLNAVAAPGQCTLPSSSGAGTFLPRGQVFG-NEARLGLHSKNFTMAGRMANDAELLFWRDA--QATWTKHLKKAKAVSWRRLHLPSFPG---------LRARGV--FGNEARLGLHSKNFTMAGRMANDAELLFWRDARATWTKHLEKAKAVSWRRLHLPSFPGIARLLALEQESLRSTGTGEKH---DKLRRSGRTAGKWAFALTCVLKANFYKRLENGSRAQRLMLRQLNALDKWVRLLSQGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTE 502          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A2P6TVU4_CHLSO (DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVU4_CHLSO)

HSP 1 Score: 164 bits (414), Expect = 2.170e-40
Identity = 112/311 (36.01%), Postives = 160/311 (51.45%), Query Frame = 1
Query:  238 AESIPDSYGSTQNYLKAMQAHTQAEFRASIKEGIVMAHRKER----NGWLPLTYGSRADHKGDFYVNGSPPKDNNPSRASNGHNFKTETWSRHVVQFHGEKTLALVVVCECSSGDHEARISLAPADKFGDARYRSKTLVRSLGYVGSFLREYGSAARL-----LQVRGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAF--GVLVFGSENRLGTHAKEFTIDGRLRNDPELVFWR 1137
            A  +PD++ S   YL AMQ+    EF+ASI++ +  A R++R    +GW            G   ++G             G +F+ ++W RH+VQ     +  L ++ +      E  ++L P              +R+LG+VG FL +Y +A  L          + +  LL  V  P          A + +PA +  RL T  V +NA+QR AV  L G L+II GPPGTGKSTTI+H+IDA V  DA+VLVT  RNQAVD+VV KVA    G+LVFG+  RLG  A + T++ R+   P +V WR
Sbjct:   98 AAGLPDAFSSDGAYLDAMQSTAALEFQASIRQALEQAEREQRRTGVSGWHEFVPQRSRRSGGSLLLDGGESHGTWVFAGHTGVDFEQDSWGRHLVQVRETGSFHLAIMAKQDDETQEHVMALLPT-----VECSGSASMRTLGFVGPFLAQYEAAQGLRYSLHCSTLPDRTRQLLAAVVRPSTLYSR--GAASTLLPAGA--RLRTDEVPINASQRAAVEALRGGLNIIHGPPGTGKSTTIFHLIDAGVQPDAQVLVTCTRNQAVDSVVDKVARLEGGILVFGNAKRLGERAAQHTLEARVEAHPAVVVWR 399          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA)

HSP 1 Score: 142 bits (358), Expect = 2.110e-32
Identity = 112/318 (35.22%), Postives = 154/318 (48.43%), Query Frame = 1
Query:  235 KAESIPDSYGSTQNYLKAMQAHTQAEFRASIKEGIVMA---HRKERNGWLPLTYGSRADHKG--------DFYVNGSPPKDNNPSRASNGHNFKTETWSRHVVQFHGEKTLALVVVCECSSGDHEARISLAPADKFGDARYRSKTLVRSLGYVGSFLREYGSAARL-LQVRGES----SNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAF--GVLVFGSENRLGTHAKEFTIDGRLRNDPELVFW 1134
            +A ++PD + S + YL  MQAHT  EF+A+    +  A   H +    W    + S A  +         DF   G P                   W +H+VQ     +  +  +        +  + L P  + G  R R    +RSLGY+GSFL +Y SA  L  Q+R  +    +  +L+  + P RQ      ++G          L T  V +NA QR AV  L G L II GPPGTGKSTTI+HI+++RV   A+VLVT  RNQAVDAVV K+A     +LVFG E RLG  AK++T+  RL   P +  W
Sbjct:   68 EAAALPDVHASPEAYLTDMQAHTALEFQAAAAAALASAEGRHPEPAQLWWNFGWVSDAKWRALRTRGQSLDFSDEGEP-------------------WVKHLVQVKETDSYHVARLARRDPDSGDDVLVLLPTVEAG-GRAREVVQMRSLGYLGSFLLQYTSAQALRYQLRTRTLPPAAQHMLQLAADPTRQLS----SSGQGTLRRGPVHLLTDTVPINAGQRAAVEGLQGGLSIIHGPPGTGKSTTIFHIVESRVQPRAQVLVTCSRNQAVDAVVGKLAGVEGSLLVFGREERLGDKAKQYTLTARLARHPTVAAW 361          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A812VWA8_9DINO (UPF1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VWA8_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 1.440e-16
Identity = 102/355 (28.73%), Postives = 159/355 (44.79%), Query Frame = 1
Query:  232 PKAESIPDSYGSTQNYLKAMQAHTQAEFRASIKEG--IVMAHRKERNGWLPLTYGSRADHKGDFYVNGSPP---KDNNPSRASNGHNFKTETWSRHVVQFHGEKTLALVVVCECSS----GDHEARISLAPADKFG-------DARYRSKTLV--RSLGYVGSFLREYGSAARLLQVRGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARV-AKDARVLVTSIRNQAVDAVVAKVA-------AFGVLVFGSENRLGTHAKEFTIDGRLRNDPELVFWRGVHETWTRAS---AKAKAVSWDRLHLP 1209
            P   ++ D+Y   + Y + M+ +  AE  +S +     V+  R  + G L     +  D  GD   +G+     KDN                   VV+F  E  L  V  CE SS    G  +    L      G       D R+ S  ++  R+  +VG ++  Y  A  LL   G +   L K V  P RQ        G++      G L    + +N+ QR AV  L+  L+II GPPGTGKSTTI+H++ +R+ + D+  +VT + NQA+DAVV K+A          +LV G+ +R+G  A  +T+D  ++ D  ++  +   E  ++AS    + +    DRL  P
Sbjct:   40 PAFLAVEDAYERAEPYYETMKRNIMAEAVSSFRAAGARVLDARPAQAGLLVTKLINGQD--GDLQASGAADLQLKDN-------------------VVEFDDE--LFWVTKCEVSSVQVPGGTKYTAELEGFSSSGRELRYPEDFRFHSDIILKLRAHIFVGDYMNRYRCARELLNGIGLTDPQLEKAVLKPWRQ------VPGTYT---RPGALREDLMPINSDQRSAVHGLSSRLEIIHGPPGTGKSTTIFHMLSSRLPSMDSAAIVTCVTNQAIDAVVEKLAQTHDSLGGLRILVLGNPDRVGRTAGNYTLDNLIKKDEIVLSMKWATELLSKASKAVTELQTARRDRLWRP 362          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A812Y2V5_9DINO (Upf1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Y2V5_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 3.930e-15
Identity = 68/214 (31.78%), Postives = 110/214 (51.40%), Query Frame = 1
Query:  619 RYRSKTLVRSLGYV--GSFLREYGSAARLLQV----RGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARV-AKDARVLVTSIRNQAVDAVVAKVA-------AFGVLVFGSENRLGTHAKEFTIDGRLRNDPELVFWRGVHETWTRAS---AKAKAVSWDRLHLP 1209
            R+ S+ +++   ++  G +L  Y  A  LL       G +   L K V  P RQ        G++      G L    + +N+ QR AV  L+  L++I GPPGTGKSTTI+H++ +R+ + D+  +VT + NQA+DAVV K+A          +LV G+ +R+G  A ++T+D   + D  ++  R   E  ++AS    + +    DRL  P
Sbjct:   98 RFHSEIILKLRAHIFAGDYLNRYRCARELLNAGLNGTGLTDPQLEKAVLKPWRQ------VPGTYTRR---GALREDLMPINSDQRSAVQGLSSRLEVIHGPPGTGKSTTIFHMLSSRLPSMDSAAIVTCVTNQAIDAVVEKLAQTHDSAGGLRILVLGNPDRVGRTAGQYTLDNLCKKDEIVLSMRWATELLSKASKAVTELQTARRDRLWRP 302          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A1Q9DNL4_SYMMI (Regulator of nonsense transcripts 1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DNL4_SYMMI)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-14
Identity = 74/223 (33.18%), Postives = 110/223 (49.33%), Query Frame = 1
Query:  655 YVGSFLREYGSAARLLQVRGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARV----AKDARVLVTSIRNQAVDAVVAKVA-------AFGVLVFGSENRLGTHAKEFTIDGRLRNDPELVF---WR-GVHETWTRASAKAKAVSWDRLHLPS------FPGIERLEEIAQEGVE 1260
            + G ++  Y  A  LL   G +   L K V  P RQ        G++      G L    + +N+ QR AV  L+  L++I GPPGTGKSTTI+H++ +R+    A     +VT + NQA+DAVV K+A          +LV G+ +R+G  A ++T++   + D ELV    W  GV    ++A A+ +    DRL  P          IERL  + +  VE
Sbjct:  183 FAGDYMNRYRCARELLNGVGLTDPQLEKAVLRPWRQ------VPGTYT---RPGALREDLMPINSDQRSAVHGLSSRLEVIHGPPGTGKSTTIFHMLSSRLPSMDAAATAAIVTCVTNQAIDAVVEKLAQTHDAAGGLRILVLGNPDRVGRTAGQYTLENLCKRD-ELVLSMQWATGVLSKTSKAVAELQTARRDRLWRPHRRSRLHISQIERLPSVLRYRVE 395          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: F2U1T9_SALR5 (C3H1-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1T9_SALR5)

HSP 1 Score: 82.8 bits (203), Expect = 6.140e-13
Identity = 84/312 (26.92%), Postives = 133/312 (42.63%), Query Frame = 1
Query:  241 ESIPDSYGSTQNYLKAMQAHTQAEFRASIKEGIVMAHRKERNGWLPLTYGSRADHK-----GDFYVNGSPPKDNNPSRASNGHNFKTETWSRHVVQFHGE----------KTLALVVVCECSSGDHEARISLAPADKFGDARYRSKTLVRSLGYVGSFLREYGSAARLLQVRGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAFGV--LVFGSENRLGTHAKEFTIDGRLRNDPEL 1125
            E+I D+ G    YL  +    +AEF+A   +             L   Y +R   K     G   V    P++    R      F    +  H++++ G           ++L+LV     SS     R   A      +       LV    YVG  + +   A R L  RGE S ALL  V+ P  QR   P    +F          +  V +N AQ+ A+  L   ++ + GPPGTGKSTTIYH++ + +      +VT ++N+AV+AV  K+    +   V G+  RL   +++ T++ R++ DP +
Sbjct:   37 EAIVDASGPVDEYLTQVLRRIKAEFKAFYDD-------------LDHDYPTRYIAKVRLTGGSLTVTDMKPEETVEERVEELEKFDAGDFQYHMLKYKGAFYIAFGQRGGQSLSLVPCGPPSSQAGSPRTGWAALALQPEEHDNDHALVLDYSYVGDIIAQ-AQACRALLERGEHS-ALLTAVADPS-QRTVVPYNHRNF----------SEDVPINEAQQTALRALRYNVEAVRGPPGTGKSTTIYHLVKSVLDPSGITIVTCVQNKAVEAVAEKLRQGSIEFFVVGNYERLSPMSRKCTLEQRVKQDPRV 322          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A812IS10_9DINO (Upf1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812IS10_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 3.350e-12
Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  655 YVGSFLREYGSAARLLQVRGESSNALLKTVSAPGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARV-AKDARVLVTSIRNQAVDAVVAKVA-------AFGVLVFGSENRLGTHAKEFTIDGRLRNDPELV 1128
            + G +L  Y  A  LL   G +   L + V  P R R       G++ PA   G++    + +N+ QR AV  L+  L+I+ GPPGTGKSTTI+H++ +R+ +     +VT + NQA+DAVV K+           +LV G+ +R+G  A ++T+D   + D ELV
Sbjct:  172 FAGDYLNRYRCAHELLLGMGLTDPELERAVLNP-RCRG-----VGTYRPA---GQIREDLMPINSDQRSAVYGLSSRLEIVHGPPGTGKSTTIFHMLSSRLPSTPCAAIVTCVTNQAIDAVVEKLGQTHDCPGGLRILVLGNPDRVGRTAGQYTLDNLCKRD-ELV 327          
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Match: A0A813KLK7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KLK7_POLGL)

HSP 1 Score: 75.1 bits (183), Expect = 8.850e-11
Identity = 72/254 (28.35%), Postives = 108/254 (42.52%), Query Frame = 1
Query:  505 VVQFHGEKTLALVVVCECSS-------GDHEARISLAPADKFGDA-RYRSKTLVRSLGYVGSFLREYGSAARLLQVRGESSNALLKTVSAP-----GRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIVGPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAFG--------VLVFGSENRLGTHAKEFTIDGRLRNDPELVFWRGVHETWTRASAKAKAVSWDRLH 1203
            +V   G  TL  +  C+ +S            R+ L      GDA  ++    ++ L + G F   +  AAR L+V       L + +  P     G  R+ +       +P             +N  Q  AV+ +   ++II GPPGTGKSTTI+H+I A +   A  +VT I NQAVDAV  K+  F         +LV G+  R+G  A  FT+D +   +  +           +  A  +AV   RLH
Sbjct:  130 IVSSAGGSTLFWITACQVASDTSATTLASRSPRVELRGMSYDGDALEHQGDLTLQPLLFAGDFASRF-RAARELKVNMAPCPQLEQAILDPRTPVLGTYREAHLRMRQDLMP-------------INPDQEAAVIGMRHRVEIIHGPPGTGKSTTIFHMISAHLPTSAAAVVTCICNQAVDAVAEKLKDFQDARTGGLPMLVLGNPKRVGHTAGLFTLDAQANREELVHCMERACAVLEKVVAGLQAVQDARLH 369          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig924.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY65_ECTSI1.810e-14349.72AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JRT8_9PHAE9.960e-9941.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6TVU4_CHLSO2.170e-4036.01DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3... [more]
E1ZLN5_CHLVA2.110e-3235.22Expressed protein n=1 Tax=Chlorella variabilis Tax... [more]
A0A812VWA8_9DINO1.440e-1628.73UPF1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812Y2V5_9DINO3.930e-1531.78Upf1 protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A1Q9DNL4_SYMMI1.240e-1433.18Regulator of nonsense transcripts 1 n=3 Tax=Symbio... [more]
F2U1T9_SALR56.140e-1326.92C3H1-type domain-containing protein n=1 Tax=Salpin... [more]
A0A812IS10_9DINO3.350e-1235.54Upf1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A813KLK7_POLGL8.850e-1128.35Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig924contigA-nodosum_M_contig924:62992..69083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FY65
PFAMsAAA_11,AAA_12
Model size1564
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.96e-144
EggNOG OGsCOG1112@1|root,KOG1802@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cds size1563
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870395.3743937-CDS-A-nodosum_M_contig924:62991..632761680870395.3743937-CDS-A-nodosum_M_contig924:62991..63276Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig924 62992..63276 +
1680870395.388634-CDS-A-nodosum_M_contig924:63554..641791680870395.388634-CDS-A-nodosum_M_contig924:63554..64179Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig924 63555..64179 +
1680870395.4006844-CDS-A-nodosum_M_contig924:64355..644891680870395.4006844-CDS-A-nodosum_M_contig924:64355..64489Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig924 64356..64489 +
1680870395.4113376-CDS-A-nodosum_M_contig924:68564..690831680870395.4113376-CDS-A-nodosum_M_contig924:68564..69083Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig924 68565..69083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig924.3.1prot_A-nodosum_M_contig924.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig924 62992..69083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig924.3.1

>prot_A-nodosum_M_contig924.3.1 ID=prot_A-nodosum_M_contig924.3.1|Name=mRNA_A-nodosum_M_contig924.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=521bp
MYRRKKSNHSTFSFSGARRGGRGGARSHHNSDDLLGLSTSFGGLSLQQPE
VIIPLLSSFAFGEVAIAGPYVEVSEAVPKAESIPDSYGSTQNYLKAMQAH
TQAEFRASIKEGIVMAHRKERNGWLPLTYGSRADHKGDFYVNGSPPKDNN
PSRASNGHNFKTETWSRHVVQFHGEKTLALVVVCECSSGDHEARISLAPA
DKFGDARYRSKTLVRSLGYVGSFLREYGSAARLLQVRGESSNALLKTVSA
PGRQRKEYPATAGSFVPASSVGRLDTSRVSLNAAQREAVMKLTGCLDIIV
GPPGTGKSTTIYHIIDARVAKDARVLVTSIRNQAVDAVVAKVAAFGVLVF
GSENRLGTHAKEFTIDGRLRNDPELVFWRGVHETWTRASAKAKAVSWDRL
HLPSFPGIERLEEIAQEGVEASINSMKNLQLEKKAKKGRAAGRWAFALKL
ILRVAYEKRLAKGTAAQRQTLKELRSLEKWQELVSRGRRRSRQIVSRLED
LTRYRLYTTTRVLICTVDSVE
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mRNA from alignment at A-nodosum_M_contig924:62992..69083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig924.3.1 ID=mRNA_A-nodosum_M_contig924.3.1|Name=mRNA_A-nodosum_M_contig924.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6092bp|location=Sequence derived from alignment at A-nodosum_M_contig924:62992..69083+ (Ascophyllum nodosum dioecious)
ATGTACCGCCGCAAGAAGAGTAACCATTCCACATTTTCGTTTTCAGGAGC CCGCAGGGGCGGCAGAGGCGGAGCCCGTAGCCACCATAATAGCGATGATC TTCTTGGTCTGTCTACTTCCTTCGGGGGACTATCTCTGCAGCAACCGGAG GTCATCATTCCCCTTCTGTCTTCGTTCGCTTTCGGCGAGGTAGCGATTGC CGGCCCATATGTCGAAGTCAGCGAAGCTGTGCCCAAGGCCGAATCTATCC CGGACAGCTATGGCTCAACACAGAATTATCTCAAGGTGCAAATGATACAC CAGTACTTGTGATTCGTAGGAGTTGCGTTGATTTAGATTGCCCTAAAATA CGATACTAGTTGATCCCGAATCATAAAATCATACTCGCGCCTCTAGAATA TAGTACATTCTATTGTATTTGAGCTCACTGGGACCTGCTTGAAGGGGGCA TCTGTCTTGAAGCTTCGTCTTTCAGGCATTTAGGGATTCTACCGTATTAC GCGCCCAAGATACATACTTCCTCGAGTTCTTGTCTTCGTCGCCCCGCTGG CACATTCTGTCAGGCAATGCAAGCTCATACCCAGGCGGAATTCAGGGCGT CAATCAAGGAAGGCATCGTTATGGCTCATCGGAAGGAAAGGAATGGGTGG CTTCCACTGACGTACGGGTCACGTGCCGATCATAAGGGCGATTTCTACGT GAACGGCTCCCCTCCAAAGGACAATAACCCCAGCCGTGCTTCCAATGGGC ACAACTTCAAGACTGAGACGTGGTCACGCCATGTGGTACAGTTCCATGGA GAGAAAACTCTTGCCCTAGTGGTGGTGTGCGAGTGTTCGTCGGGTGACCA CGAAGCGAGGATATCTTTAGCGCCAGCTGACAAATTTGGCGATGCTCGTT ATCGTTCCAAGACTCTGGTACGCTCTCTCGGATACGTTGGTTCTTTCTTA CGGGAGTACGGCAGCGCTGCTCGTCTCCTTCAAGTCCGGGGTGAAAGTAG TAACGCGTTACTGAAGACGGTGTCCGCTCCGGGTCGGCAGAGGAAGGAAT ATCCAGCGACAGCAGGATCCTTCGTACCAGCTTCTTCCGTCGGCAGGCTC GACACCTCACGTGTCTCCCTCAACGCCGCCCAGAGGGAGGCAGTCATGAA GCTCACTGGTTGCCTGGACATCATTGTCGGACCTCCCGGTGAGCGATTTT ATTACAAATTGTCTGGTCTTGGGTACACATGCCTCATTCCTTCGTGCCTC AAATTATCCGTGCGAACTGTCCAAGCGAACATTGAACTGAGATTCAAAGA CTCAGTGGAAAGACCTGACTCCGCTTCGGCCCTCGATGCCCGCCTGGAAT CTTGAGCGCCTCAGGCACGGGGAAGTCCACAACAATCTATCATATCATCG ACGCAAGGGTGGCCAAGGACGCGCGTGTACTCGTCACATCTATCCGGAAT CAAGCCGTCGATGCAGTCGTGGCAAAGGTGGCCGCCTTCGGAGTCCTGGT GAGTTTCACTTTATCATGTTTACTTTTATCGCGCGAGGCTGAAAATATTG TTGGGTTCTCGGCACAAACGTGCCCATCGGATACCGCGCTTTTTAAATAG AGAAGCCTTCGAATCTACGAATCAAACGCTCAAGAGAAATCTGCGCTAGC TTGTATGCATCTATTCAGTTTAACTCTTAGTAAACACACCCTTTCGTAAA CGCACCGGTGTGCACGATTATCATGGGTGCTTTCCGCGGTTACAGTTGAA CAATTTTTCTATACAAACGCATCTCGGTGCGTTCGAAGCAGTGCGCAGTA GAGACGTCGTTATTCTATAGATCTCACCATTCAGCGCGTTATTTGGTCCA TGGGGGAACCTGAATTATTGCTAACATCCGTTATTGAAGCTAATTCTAGG GCTACTGGCCCTGTGCCGGTGGACTCGGTAGTGAACGTCATCGGCACGCA AGTGCATAGCCTGATAAACTCGATGGCGGTTGGTGGTACAAAACCATGAC GCCATCGCGGAAAGTGGGGGAAATCCCGCGAGTAAGCACCAGATTTAGCC TGGGTGTGGAGAATAAGCAAATGCTGAACCTGTCTCACGAGGCCGAAGTC TCGGGCGCGAAGGTGGACAGATGAAGAAATAGTTCTCCCTGTTGAGGTGA CAAGGAGCAGGATTTGTGGCCATACCCGGTTGATCCATACTCTGCTGAAA GTACGGACGATGGTTAGAAAATGCATACACATACATGTGCCACTGAATGA AGTGGGCCTATTGGCTTCTGCCAGAGCTACGTCGTGAAGGGTGCGATATA CCCTTGATGTTCTCACCATGTGATTTTGACTTCATGTCGCCGTGAGACAA TCGCTATTATCATTAGTGAGCCGTGCTTATTTTATGTCACACGTTACTAA GAGTTATACTTGAATTTGTTCTAGTCTAACCCACTGCTCATTGCATTCCG CATTTTTTCTCGTTGCAAGTAATAATGATGTGTCCTTTCTCCGAACACAC TAAGTTAATAATGCTCACAAATATTTCAATGCCAGACGGGGTATTATACG TTTATCAAACTATTGCGTGTGGAGAGTTTCCAAAAGCGCAAAATCCAGTC TAACTAAAAACACAGCAGGAAAGGTTGTTGTTGATTTACACACTCAGTGT ATTGTCCTTGTAACAGAAGAAACTACGGTGACACAAGTTCAGCCATAGAC ACATCAAATGCCAATCCCGCTCGTGGTCTCAAAGAGGTATGCAGGCCCAT GGGTCACGTCATGGTGACAGCCCGCTACTCAAACCAACAGGGATCCAAAT CGCGACAAAACCCTTGCCAGGTTCAACCAACCGAGAACATCGGAAACTTA TCGGCGTCAAGACGATGTCTTTGGGTACGAACTACAGTTTCTACATGTAT GTATGTATGTCTGGAGTGCTGCCAGTAGTTCAGAATCTGAAGAATTACAG TACAAGCTATGATACAGAGAAGACTGGCTGATGCATGTGCTGCCCAACCG ACAAAGTCATCAAAAGTGATACAAAAGCTTTCAAGCTCTCGGAGGGTTAC ACGAAGACAAGTTATGCGACATTTTACAGGCGATGGCACCGACCAATGTC GAAGTTGTTCATCAAACATCCTTATTCAATATCGAGAGCAACCTCGATCG ACTCGGATTGTTGTCGCCAACCCACGGCCAGAGTTCTCAACAAAGCGGAC AAATCATGCCCCAAAGCTCGTCGCCCAAAGCTCGTCGCCCGCGTGGTCTA TTATTAGTAGGTAACCTGCACACCACCTGCTAGTAATAGTGGGGAAGTCG TGAGTTCGATACTTACCAAAGTAAGATTTGTGTTCTTTCTTCCGTGTAAC GGAAAACAAACGTGGGAACGAGAGTAAATAAAATTCAACCATTGGTTGAC GAGTTATAAGATTGCGGAACTTGCATCGCGACAAAAAAACGAAAGGCGTG AACCGGGGAGAGATGAAAAGATTCTTAGTGACCACAGGCAGATGGTAATG ACGAGGTCCATCGGCTATAAATGAGATTAATAGTTTGGATAAGCAAGCCC GCAAGTTTCTCAAGGCTGTACACATCATGCAGAAACCGGGAAATTTGAAA TACCGAGGTCCGTAGTGGGTGAAGGCCTTGAGCTGGTGTAGCCGACGCGC GAGCCAGCATCCAGCCGTGTCCAAAGCCCTGTGCATCCCTGAAAAACCCC CACGAATCTTGCACGTTCGCCGCTCCTACTCGGCCCTCGTAGGAAGAAAA CAGACTGTGGCCAGAAATCAGCTTTTCTCTCTGAATCCTCCCGGTTCGCG CCTTTGATTTTTGCGCACAAGGGTTCAGCACCCCGCTGGCTGGTCAGCGA TCGAGCTGCCCTCCGCCCTCGGCGAATATAGCTATTTGAAGAGCTAGCAC GTAATTTTAATGCGCATCCACCTGGTCCGAAGAATTGTGGCGAAACTCTT ATTAATAGTTGGGAGCGCAAGTAGGTACTGGTAAACTATAACTGGCGGAA GAGCAGCCCGCATTCAAACCCAAATAGGCTAGATACAAAGATATTGGTGA AGCGGGGAGCAATTGTTGAGAAACAACTGTAAAGTTATAAAAGGTGAAGA AGAACAGTCCGATATAGGGAAATACGGCCATTCGATGTTTTCTATCAATC GTCACACAACAAGTCGACCAACGAGTATTGAACTTTAACATTTCCGTGAC GTCGGTGAGTAGATGTTGATGTATAGATTCAGTAGTGTACCCACTTTTGA ACCTTTCGATTGTGTCGGCCAAAAGTTCTAAAGAAAAAAGCTTCACTGTT CACAATCAGGGATTTTTATGTATCCCATCGCAAAGTCTTCTTACTACGGA CTACCAGATATGAAAACATTATCTAAAATATCCACAGTATGTAAGTATTA TAATCATCATCACATGTAGCAGAATATGGTCAACCTGGTGATCAAAAGAA AAATCTGAATGCACCTAGACCTTCTGAGCATCCCGATGTTCCCAATCTTG CTCGTGGTCAGCTAAACAGAGGAAATTCATATCTTCCTGTCCCTGTTCGT GCCTGAGAATTTGGTCTCGCGAGACGGACTCGGCCGTCCCGTCCCGCGTC AGCCTGCTCGTTCTCCACACTTCAGGCTTCAGGTTGAATTTGGTGCTTAC TCACGGGCTTCTCGATTTCCACGGCGGCGTCCATTTATTTAATTAAACCG CCATAGTATTACGCCATCGGGTCATTCTCGGGTTTATCGGGTCACGCAAT TGCGTATCGACGGCGTTCACTTTCAAGTGTCCGCCGGCACAGGGCCAGTA GTCAAGATAGTTCCAGCAATGGTGGTTGCTGCCTTTGCAGGTCACCATGG ACAAATTTATGTGCACCTCTCGTAGTACACAGTAGGCCATGGTTCCCATG AAACACGTACTAGCCAAAAGTGTTCTTGGTGGTACAAAAGTGTGTGAGTG TCCACTATGTTATTACTTAAGAAATGTAGAGTACACAGCAACCGGACATA GCAGCGAACCCTCTTTGTGGTCAGCTCAATCGAGGATGAATGTATTTTTC CTGCCCCGATGCACGCCTGAGAATTTGTTTTTTGCGAGACACGAGTGCGG ACCCTCATCGGACTGTCTGGTCCCCATCGGACTGTCTGGTCCATTATTTT ATCATACTTTTCCCCCATCAGACAAGTAACTGAAGAGAAACGAGACCAGG CCATTCTTACAGCCCTCATGTTTTTGAGTGTTTGATAAGATTTGGAAGTG TTACCATGCGACGTCATATGCCCAACTTCCGATAGCGTTGCTCTGTACCA TTCTCGGAGGGAGACGCATGACTTACAGCGACATTTGGGCTTGAAACATC CGCCCAGGAATGGATTGCAGTCTAAATATGTACCGTCTAACCGAAGGTAA CGAACGGTACTTTCTGACATTCCTTTTGCGCCTGACATTGTATGTGTTAC TGAAGCGATATTAGAACGTACATATAATGAAATGTCCGCATCATTCACCA TCATCGCCGTGAGAGATATTCCTCAAGAGTTGAGCTGTGATACTTCTGCT GTCGCGATCGTTCATTCTCGAAGGTGTTCGGGAGTGAGAATCGCCTAGGC ACTCACGCCAAAGAGTTCACCATAGATGGTCGTCTGCGGAATGACCCAGA ACTCGTTTTCTGGCGTGGCGTGCACGAAACATGGACCCGAGCTTCTGCCA AAGCGAAAGCCGTGTCTTGGGACCGGCTCCACCTTCCCAGCTTCCCGGGA ATCGAAAGGCTTGAGGAGATCGCGCAGGAAGGCGTCGAAGCCAGCATCAA CTCGATGAAGAATCTGCAATTGGAGAAAAAGGCCAAGAAGGGTAGGGCTG CAGGGAGGTGGGCCTTTGCCCTGAAACTCATTCTCCGGGTGGCCTACGAA AAGAGACTCGCCAAAGGCACCGCGGCACAGAGACAGACTCTAAAAGAGCT GCGCTCACTCGAAAAGTGGCAGGAACTTGTTTCCCGCGGACGCCGTCGGT CAAGGCAGATTGTATCCCGTTTGGAAGACCTGACACGGTATCGTTTGTAC ACCACCACGCGGGTGCTAATATGCACGGTAGACAGCGTGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig924:62992..69083+

>mRNA_A-nodosum_M_contig924.3.1 ID=mRNA_A-nodosum_M_contig924.3.1|Name=mRNA_A-nodosum_M_contig924.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1563bp|location=Sequence derived from alignment at A-nodosum_M_contig924:62992..69083+ (Ascophyllum nodosum dioecious)
ATGTACCGCCGCAAGAAGAGTAACCATTCCACATTTTCGTTTTCAGGAGC
CCGCAGGGGCGGCAGAGGCGGAGCCCGTAGCCACCATAATAGCGATGATC
TTCTTGGTCTGTCTACTTCCTTCGGGGGACTATCTCTGCAGCAACCGGAG
GTCATCATTCCCCTTCTGTCTTCGTTCGCTTTCGGCGAGGTAGCGATTGC
CGGCCCATATGTCGAAGTCAGCGAAGCTGTGCCCAAGGCCGAATCTATCC
CGGACAGCTATGGCTCAACACAGAATTATCTCAAGGCAATGCAAGCTCAT
ACCCAGGCGGAATTCAGGGCGTCAATCAAGGAAGGCATCGTTATGGCTCA
TCGGAAGGAAAGGAATGGGTGGCTTCCACTGACGTACGGGTCACGTGCCG
ATCATAAGGGCGATTTCTACGTGAACGGCTCCCCTCCAAAGGACAATAAC
CCCAGCCGTGCTTCCAATGGGCACAACTTCAAGACTGAGACGTGGTCACG
CCATGTGGTACAGTTCCATGGAGAGAAAACTCTTGCCCTAGTGGTGGTGT
GCGAGTGTTCGTCGGGTGACCACGAAGCGAGGATATCTTTAGCGCCAGCT
GACAAATTTGGCGATGCTCGTTATCGTTCCAAGACTCTGGTACGCTCTCT
CGGATACGTTGGTTCTTTCTTACGGGAGTACGGCAGCGCTGCTCGTCTCC
TTCAAGTCCGGGGTGAAAGTAGTAACGCGTTACTGAAGACGGTGTCCGCT
CCGGGTCGGCAGAGGAAGGAATATCCAGCGACAGCAGGATCCTTCGTACC
AGCTTCTTCCGTCGGCAGGCTCGACACCTCACGTGTCTCCCTCAACGCCG
CCCAGAGGGAGGCAGTCATGAAGCTCACTGGTTGCCTGGACATCATTGTC
GGACCTCCCGGCACGGGGAAGTCCACAACAATCTATCATATCATCGACGC
AAGGGTGGCCAAGGACGCGCGTGTACTCGTCACATCTATCCGGAATCAAG
CCGTCGATGCAGTCGTGGCAAAGGTGGCCGCCTTCGGAGTCCTGGTGTTC
GGGAGTGAGAATCGCCTAGGCACTCACGCCAAAGAGTTCACCATAGATGG
TCGTCTGCGGAATGACCCAGAACTCGTTTTCTGGCGTGGCGTGCACGAAA
CATGGACCCGAGCTTCTGCCAAAGCGAAAGCCGTGTCTTGGGACCGGCTC
CACCTTCCCAGCTTCCCGGGAATCGAAAGGCTTGAGGAGATCGCGCAGGA
AGGCGTCGAAGCCAGCATCAACTCGATGAAGAATCTGCAATTGGAGAAAA
AGGCCAAGAAGGGTAGGGCTGCAGGGAGGTGGGCCTTTGCCCTGAAACTC
ATTCTCCGGGTGGCCTACGAAAAGAGACTCGCCAAAGGCACCGCGGCACA
GAGACAGACTCTAAAAGAGCTGCGCTCACTCGAAAAGTGGCAGGAACTTG
TTTCCCGCGGACGCCGTCGGTCAAGGCAGATTGTATCCCGTTTGGAAGAC
CTGACACGGTATCGTTTGTACACCACCACGCGGGTGCTAATATGCACGGT
AGACAGCGTGGAG
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