mRNA_A-nodosum_M_contig92.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig92.2.1
Unique NamemRNA_A-nodosum_M_contig92.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A6H5KC32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC32_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.740e-39
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:    3 KTKVAVCRAFLR-GECDKKDECLLTHAVQTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVERDWKRPSRDDE--GNYGTGND 305
            + KVAVCRAFLR G CDK D+CLLTHAVQ EKMPVCI+FE+GMCFTPNCPY HVKVSQ+AAVCP FLKG+CPDG +CRLKH   D ++ ++DD   G++G G++
Sbjct:  808 RAKVAVCRAFLRKGGCDKGDKCLLTHAVQAEKMPVCIYFEKGMCFTPNCPYLHVKVSQNAAVCPRFLKGHCPDGTACRLKHELPDPRKRAKDDSAGGDHGDGDE 911
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: D8LB82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB82_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.110e-38
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 3 
Query:    3 KTKVAVCRAFLR-GECDKKDECLLTHAVQTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVERDWKRPSRD 275
            + KVAVCRAFLR G CDK ++CLLTHAVQ EKMPVCI+FE+GMCFTPNCPY HVKVSQ+AAVCP FLKGYCPDG +CRLKH   D ++ +RD
Sbjct:  793 RAKVAVCRAFLRKGGCDKGNKCLLTHAVQAEKMPVCIYFEKGMCFTPNCPYLHVKVSQNAAVCPRFLKGYCPDGTACRLKHELPDPRKRARD 884
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A1Y1Y6V5_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6V5_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 6.550e-20
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 3 
Query:    9 KVAVCRAFLRGECDKKDECLLTHAVQTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFL-KGYCPDGLSCRLKHVERDWKRP 266
            +VA+C  FLRG C+K +EC  +H +  E++P+C  F++G C   +CPY HVKV+  A VC  FL +GYCP+G SC+ +HV   W+ P
Sbjct:  297 RVAICTKFLRGACEKPEECPFSHNITPERVPLCYHFQKGKCTNQDCPYLHVKVNPDAPVCKAFLTEGYCPNGKSCKERHV---WECP 380
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A8J4PM82_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PM82_9MYCE)

HSP 1 Score: 91.3 bits (225), Expect = 8.640e-18
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 3 
Query:    3 KTKVAVCRAFLRGECDKKDECLLTHAV-QTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV---ERDWKRPSRD 275
            K+K+  C  FL G C +  EC L H +   E+MP+C  + +GMC   NCPY HV VS++A +CP+F KGYCP+G +C +KH    E+D    ++D
Sbjct:  369 KSKIRTCPKFLSGTC-QDSECHLKHEITDLEQMPICYLYLKGMCTKVNCPYLHVFVSKNAKLCPDFQKGYCPNGSACTMKHTYGKEKDINEKNKD 462
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A0L0HJN2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJN2_SPIPD)

HSP 1 Score: 83.2 bits (204), Expect = 5.630e-15
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:    9 KVAVCRAFLRGECDKKDECLLTHAVQTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNF-LKGYCPDGLSCRLKHV 245
            ++AVC AFL+G+CD  + C L+H+     MP C+ FER      NCPY HVK+S  AA+C +F L+G+C  G  C+ +HV
Sbjct:  292 RLAVCPAFLKGQCDV-ESCKLSHSPNMHNMPTCLHFERXXXXNENCPYLHVKLSPDAAICRDFALEGFCEAGDQCKNRHV 370
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: UPI001455641C (serine/arginine repetitive matrix protein 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455641C)

HSP 1 Score: 81.6 bits (200), Expect = 2.300e-14
Identity = 39/82 (47.56%), Postives = 45/82 (54.88%), Query Frame = 3 
Query:    9 KVAVCRAFLRGECDKKD-ECLLTHAVQTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHVER 251
            KVAVC  FLRG C K D  CL +H V  E                +CPY HVKVS  A  CP+F+KGYCP G  C+ KH+ R
Sbjct:  766 KVAVCTRFLRGTCPKTDGSCLFSHKVSKEXXXXXXXXXXXXXNRDDCPYSHVKVSNKATPCPDFIKGYCPLGEKCKKKHIVR 847
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: UPI0015ACC594 (zinc finger CCCH domain-containing protein 3 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ACC594)

HSP 1 Score: 74.7 bits (182), Expect = 2.170e-13
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:   96 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV 245
            MPVC +F RG+C + +CPY HV VS+SAAVC +FL+GYCP G  C+ KH 
Sbjct:    1 MPVCSYFLRGICSSSSCPYSHVYVSRSAAVCQDFLRGYCPRGEKCKQKHT 50
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A060STT3_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060STT3_PYCCI)

HSP 1 Score: 75.5 bits (184), Expect = 2.370e-12
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:    9 KVAVCRAFLRGECDKKDE-CLLTHAVQTEKMPVCIFF-ERGMCFTPNCPYRHVKVSQSAAVCPNF-LKGYCPDGLSCRLKHV 245
            KVA+C AFL+G C    E C L+H    E+ P+C+ F   G C  PNCP+ HV+V     +C +F + GYC  GL C  +HV
Sbjct:  246 KVAICWAFLQGNCPHSAETCPLSHDPTPERTPLCVHFANNGRCTRPNCPFPHVRVGPREGICRDFAVLGYCEKGLDCDKQHV 327
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: UPI000CDFCBD4 (zinc finger CCCH domain-containing protein 3-like n=3 Tax=Salmoninae TaxID=504568 RepID=UPI000CDFCBD4)

HSP 1 Score: 71.6 bits (174), Expect = 4.870e-12
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   96 MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV 245
            MPVC +F +G+C   +CPY HV VS+ AAVC +F++GYCP G  C+ KH 
Sbjct:    3 MPVCSYFLKGICNNSSCPYSHVYVSRKAAVCQDFIRGYCPQGQKCKKKHT 52
[Close]
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Match: A0A811UUW5_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811UUW5_CERCA)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-11
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 3 
Query:    9 KVAVCRAFLRGECDKKDECLLTHAVQTEKMPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKH 242
            K  V   FLR EC   D CLL+H V   KMPVC+      C   +CPY H K+S +A VC +FL+GYC     C  +H
Sbjct:    6 KFTVNNVFLRSECHNPD-CLLSHNVSLAKMPVCV------CVRTDCPYLHKKLSITADVCQDFLRGYCKLAEQCNKRH 76
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig92.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KC32_9PHAE1.740e-3969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB82_ECTSI1.110e-3875.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1Y6V5_9FUNG6.550e-2047.13Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A8J4PM82_9MYCE8.640e-1844.21Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A0L0HJN2_SPIPD5.630e-1546.25Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
UPI001455641C2.300e-1447.56serine/arginine repetitive matrix protein 2-like n... [more]
UPI0015ACC5942.170e-1360.00zinc finger CCCH domain-containing protein 3 n=1 T... [more]
A0A060STT3_PYCCI2.370e-1243.90Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
UPI000CDFCBD44.870e-1254.00zinc finger CCCH domain-containing protein 3-like ... [more]
A0A811UUW5_CERCA1.470e-1144.87(Mediterranean fruit fly) hypothetical protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig92contigA-nodosum_M_contig92:2813..4633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB82
Preferred nameZC3H3
PFAMszf-CCCH
Model size639
Max annot lvl2759|Eukaryota
KEGG koko:K06093
KEGG Pathwayko04015,ko04144,ko04360,ko04390,ko04391,ko04530,ko05165,map04015,map04144,map04360,map04390,map04391,map04530,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006355,GO:0006357,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016973,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032386,GO:0032879,GO:0032880,GO:0032925,GO:0032927,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034641,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046332,GO:0046483,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070412,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098787,GO:0098789,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1903506,GO:1903827,GO:2000112,GO:2000197,GO:2001141
Exons3
Evalue3.67e-26
EggNOG OGsCOG5084@1|root,KOG1492@2759|Eukaryota
Descriptionzinc finger
Cds size258
COG categoryJ
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870382.4552114-UTR-A-nodosum_M_contig92:2812..29071680870382.4552114-UTR-A-nodosum_M_contig92:2812..2907Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig92 2813..2907 +
1680870382.5077753-UTR-A-nodosum_M_contig92:4347..46331680870382.5077753-UTR-A-nodosum_M_contig92:4347..4633Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig92 4348..4633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870382.4686387-CDS-A-nodosum_M_contig92:2907..30151680870382.4686387-CDS-A-nodosum_M_contig92:2907..3015Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 2908..3015 +
1680870382.483559-CDS-A-nodosum_M_contig92:3903..39841680870382.483559-CDS-A-nodosum_M_contig92:3903..3984Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 3904..3984 +
1680870382.4929955-CDS-A-nodosum_M_contig92:4278..43471680870382.4929955-CDS-A-nodosum_M_contig92:4278..4347Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 4279..4347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig92.2.1prot_A-nodosum_M_contig92.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig92 2908..4347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig92.2.1

>prot_A-nodosum_M_contig92.2.1 ID=prot_A-nodosum_M_contig92.2.1|Name=mRNA_A-nodosum_M_contig92.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MPVCIFFERGMCFTPNCPYRHVKVSQSAAVCPNFLKGYCPDGLSCRLKHV
ERDWKRPSRDDEGNYGTGNDGKTEDTRGETGLVHV*
back to top

mRNA from alignment at A-nodosum_M_contig92:2813..4633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig92.2.1 ID=mRNA_A-nodosum_M_contig92.2.1|Name=mRNA_A-nodosum_M_contig92.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1821bp|location=Sequence derived from alignment at A-nodosum_M_contig92:2813..4633+ (Ascophyllum nodosum dioecious)
ACAAGACGAAGGTCGCCGTCTGTCGAGCATTTCTGAGAGGCGAATGCGAT
AAGAAGGACGAGTGCCTTCTTACGCATGCCGTTCAGACGGAGAAGATGCC
CGTGTGCATTTTTTTTGAGAGGGGCATGTGCTTCACACCCAATTGCCCCT
ACCGGCACGTGAAGGTCAGCCAGAGCGCGGCTGTCTGCCCCAACTTTCTT
AAGGTGAGATCTGTTCGCATACCCCAAGCAAGATATGCTTATTTTAATAA
TTGAATTTATATCGGTTTGTTGGCAGTTTATGCCCATCTTCCTTTAGTAA
GTCTGTATTCGGAAAGATCAGGATGGAACTGGGTTCGCGTAAACGTGTGC
TTTAAAAAGGAACAGGTGTTTGTGAGGGCGGAAGGATTTGTTCTGTGTCT
TGGGACAGCAACTTAAAGAGTACTTGTCGCTGTATTGAATGGGCGGCGAC
AGACGTGCGCACGTTGTCCGTTCTTTTTACACTTGGCAGCAAGGCAAGTT
CAAGTCAAACTCCTGCAACCACAGTAGGAAGAGCGACGAGAGATAACAAC
AGCAGCTTCTCTAATGACTTTCCCGCCCGCCCGCCGCGTTGCCGGGGTGG
GCGCCGATTTCCTTGCGACGAGGTCTGGCTGCCTTGCAACCGTCGCTTTA
TTTACTTCTCAACGCGGCCGTGCTTGTTGAGCTACACCACATGACCTCAA
GTAGACTTTCTCGTGCCGGGTGAAGTGCACGCTTTCTGGGGACGTATTTG
TTCCTCTTGTTCGCAAATATAATATGTCGGCGCCCTTCACCACCCGTCTG
CTGTACCGTGCTCGATTTATAAGGTCTCTCTATATTTACCTAAGTGCGTT
TTGACGGGAGTTAGGCCTTTCTTTTCTACACGCCCGGCCACAGCACACAC
CGTATACCCACACGATTGAATGTTGCGTCTGTTCTACTTCAAGAGGTATT
CATGGAATGATCTGGCGCGTGCGGTTGGCGGAGTCATGGACAGGTGATCC
GCCAATGAACATTTTCAGGCACCATTAAAGTTCATTGTAAAGTTCCCCGT
TCTTAATTCCTTTATCCTTTTTATCCATGCCAATTCAACAGGGTTACTGT
CCGGATGGCTTATCGTGTAGACTGAAGCACGTGGAACGCGACTGGAAGAG
GCCAAGCCGAGACGACGAGGGCGTGAGCACTTCTGCAGCAATACGTCTCG
TACATTTTTTTTGCCAACGAGTTCAACGCCCCGCCCCCCATTTTTTATTT
TTCATTTTGTCTAGAACCTTTCGGAAAAAAAAATCGGACGTAGTATGTCT
CCTCAAATTTTCCACATCACAAGTCGCCTCAACTTTGTATCACGCAATCG
CCTTGGTCTCCGAGTCTACTTTTTCTGTTGTACGCCTTACCCTTCCGCCA
TCCCCTTTCCCTCCTTTTCCCCGCCCACCCCTTTCCCTCCTTCCCCCCAC
GCCTCGGTCGTCAAAGAACTATGGTACCGGAAATGATGGAAAGACGGAAG
ACACGAGGGGCGAGACAGGTCTGGTCCATGTGTAAAGCGCTTTGCCCGAT
GGACAAGAAAGCGCGGGAAAAGTGTTTTGAATGCTTTAGATGTGTTATCC
CGACGCCGCGTGCCTCCATGACCTTGAAAGAATAAACCGACCGAGTCAGG
TACACGAAATTTTGCGAGTTAGCTATAGATTACGCCCGAGCGTGACCACG
GCATTTTGCGGTAGCCGAGATTTTGACGTGGCCAACTGCACTGTGAACTG
TGTGTCTCAACTGCTCTTGTTGACCGGCCTTGCAGGTTGATGGAAATGGC
TACAGGGGACGACGGTCTTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig92:2813..4633+

>mRNA_A-nodosum_M_contig92.2.1 ID=mRNA_A-nodosum_M_contig92.2.1|Name=mRNA_A-nodosum_M_contig92.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig92:2813..4633+ (Ascophyllum nodosum dioecious)
ATGCCCGTGTGCATTTTTTTTGAGAGGGGCATGTGCTTCACACCCAATTG
CCCCTACCGGCACGTGAAGGTCAGCCAGAGCGCGGCTGTCTGCCCCAACT
TTCTTAAGGGTTACTGTCCGGATGGCTTATCGTGTAGACTGAAGCACGTG
GAACGCGACTGGAAGAGGCCAAGCCGAGACGACGAGGGCAACTATGGTAC
CGGAAATGATGGAAAGACGGAAGACACGAGGGGCGAGACAGGTCTGGTCC
ATGTGTAA
back to top