mRNA_A-nodosum_M_contig9196.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9196.7.1
Unique NamemRNA_A-nodosum_M_contig9196.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9196.7.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-10
Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    1 AFSEEQIHEHVKSLDSGMHLTQERIQ-----------------------------------IISHPMDLGTIARKLDKQGSGGY 147
            AF+E+QI  HVKSLD+GMH++QERIQ                                   II+HPMDLGT+ARKL K+G+GGY
Sbjct:  391 AFTEDQILNHVKSLDTGMHVSQERIQAAAGAVLTKLRDSQFGWVFNDPVDPVHLNLPDYFEIITHPMDLGTVARKLAKEGAGGY 474
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BLAST of mRNA_A-nodosum_M_contig9196.7.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.380e-10
Identity = 38/88 (43.18%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 AFSEEQIHEHVKSLDSGMHLTQERIQ---------------------------------------IISHPMDLGTIARKLDKQGSGGY 147
            AF+EEQI  HVKSLD+GMH++QERIQ                                       II+HPMDLGT+ARKL K+G+GGY
Sbjct: 1299 AFTEEQILNHVKSLDTGMHVSQERIQAAAGAVLTKLRNSTFGWVFNDPVDPVYLNLPDYFEASRRIITHPMDLGTVARKLAKEGAGGY 1386
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9196.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPT9_ECTSI3.200e-1044.05Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KPY4_9PHAE4.380e-1043.18Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9196contigA-nodosum_M_contig9196:14364..15168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPT9
PFAMsBromodomain,HAT_KAT11,PHD,ZZ,zf-TAZ
Model size150
Max annot lvl2759|Eukaryota
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.24e-11
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota
EC2.3.1.48
Descriptionhistone acetyltransferase activity
Cds size147
COG categoryBK
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870380.5737746-CDS-A-nodosum_M_contig9196:14363..144411680870380.5737746-CDS-A-nodosum_M_contig9196:14363..14441Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9196 14364..14441 +
1680870380.5942118-CDS-A-nodosum_M_contig9196:15098..151671680870380.5942118-CDS-A-nodosum_M_contig9196:15098..15167Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9196 15099..15167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9196.7.1prot_A-nodosum_M_contig9196.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9196 14364..15167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9196.7.1

>prot_A-nodosum_M_contig9196.7.1 ID=prot_A-nodosum_M_contig9196.7.1|Name=mRNA_A-nodosum_M_contig9196.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
AFSEEQIHEHVKSLDSGMHLTQERIQIISHPMDLGTIARKLDKQGSGGY
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mRNA from alignment at A-nodosum_M_contig9196:14364..15168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9196.7.1 ID=mRNA_A-nodosum_M_contig9196.7.1|Name=mRNA_A-nodosum_M_contig9196.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=805bp|location=Sequence derived from alignment at A-nodosum_M_contig9196:14364..15168+ (Ascophyllum nodosum dioecious)
GCATTTTCCGAAGAACAGATACACGAGCATGTGAAGTCCTTAGATAGCGG
GATGCATCTAACGCAAGAAAGGATCCAGGTGCGTCCGTGGCCAAAAATGA
GCATGGCGTCCTATGCATCCCTCAGCAGCAACCAACCAATATTATTATTA
TAGTAGCTGTCGTCCCTTCTCTAATACTCAGTATTAATAATGGGCTTTTT
ATTCAGAATGAGCGCTCTTAAACTCTCTCGGAAATTCCAACTAAAAGTGG
GAAGTCCAGATAGATAACAGTTTACCTTACACTAAACACAAATTAATCTT
TACTTAGTATAACAGTTAAGTTGTGGCTTGTCCCCCTTCATCACGCCCCC
CAGAAGGCAGCTATAATAGCTCAGCTATTAATATGAACGAACCCGTCGAC
TCCGTCATCCAGAAAATCCTAGACTACTTCGAGGCAAGTCGAGGAAGAGT
AATGAGAAAAATAGTACATAATGTGTTTTCCCTAGTAGAAAAGAGGGAGA
CTGGGAATTCCGAGGTCGTGCATGTGGCGGCAAAGGTGTAGGGGTTTCAA
CGAAGTACACGTGTGACTCGGGACAACCACGCCCCTCCTTATCTACTCTC
CCCCTCACATGATACTGAATATATTGGGAAACTGGTTCTTTCACGCTCCT
TGCGACTGACTGTCTCGGACCCCCGTATTGCACCTCTCATTCAATCAACT
CCTTACCTTACCTCTCTCGTATTGCACCCTTGTAGATCATATCTCATCCT
ATGGACCTGGGGACGATTGCCCGGAAACTCGACAAGCAAGGTTCCGGAGG
ATATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9196:14364..15168+

>mRNA_A-nodosum_M_contig9196.7.1 ID=mRNA_A-nodosum_M_contig9196.7.1|Name=mRNA_A-nodosum_M_contig9196.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig9196:14364..15168+ (Ascophyllum nodosum dioecious)
GCATTTTCCGAAGAACAGATACACGAGCATGTGAAGTCCTTAGATAGCGG
GATGCATCTAACGCAAGAAAGGATCCAGATCATATCTCATCCTATGGACC
TGGGGACGATTGCCCGGAAACTCGACAAGCAAGGTTCCGGAGGATAT
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