mRNA_A-nodosum_M_contig9196.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9196.6.1
Unique NamemRNA_A-nodosum_M_contig9196.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 3.800e-48
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 IEKANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPK 279
            + KAN LYIREVSVM TVHLVKPGF RRYG  G YPA FPVRSKCIVL QELDGVDVLLFGMYVYEYGHTCP+PNQRRVYISYLDSVHYFRP+
Sbjct:  696 VTKANTLYIREVSVMDTVHLVKPGFHRRYGPAGEYPADFPVRSKCIVLFQELDGVDVLLFGMYVYEYGHTCPAPNQRRVYISYLDSVHYFRPR 788
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.830e-48
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 IEKANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPK 279
            + KANNLYIREVSVM TVHLVKPGF RRY   G YPA FPVRSKCIVL QELDGVDVLLFGMYVYEYGHTCP+PNQRRVYISYLDSVHYFRP+
Sbjct: 1624 VTKANNLYIREVSVMDTVHLVKPGFHRRYSPAGEYPADFPVRSKCIVLFQELDGVDVLLFGMYVYEYGHTCPAPNQRRVYISYLDSVHYFRPR 1716
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A482S4D2_9ARCH (Histone acetyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4D2_9ARCH)

HSP 1 Score: 120 bits (302), Expect = 8.580e-33
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   43 MGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPKR 282
            M  +H V+ G   RY G G YP  FPVR+KC++L Q +DG DVLLFGMYVYEYGH CP PNQRRVYISYLDSVHY RPK+
Sbjct:    1 MDKLHTVREGVYNRYKGKG-YPTDFPVRTKCLLLFQNIDGQDVLLFGMYVYEYGHKCPQPNQRRVYISYLDSVHYLRPKQ 79
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: F0YI83_AURAN (Histone acetyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI83_AURAN)

HSP 1 Score: 129 bits (323), Expect = 1.200e-32
Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   10 ANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPKR 282
            A+ +Y+R++S +   H VKP   +RY  D  YP  FPVRSKCI+L QE+DGVDV+LFGMY+YEYGH CP PNQRRVY+SYLDSV+YFRP++
Sbjct:  267 ASAVYVRQLSNIEKAHQVKPRILQRYA-DQKYPREFPVRSKCILLFQEMDGVDVILFGMYLYEYGHNCPQPNQRRVYVSYLDSVYYFRPRQ 356
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A7S3K383_9STRA (Histone acetyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K383_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.080e-32
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   10 ANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPKR 282
            A+ +Y+R++S +   H VK    ++Y    +YP+ FPVRSKC+VL QE+DGVDV+LFGMYVYEYGH CP PNQRRVY+SYLDS+HYFRP++
Sbjct:  119 ADGIYVRQLSNIDKTHQVKSRLIKQYENT-HYPSEFPVRSKCVVLFQEIDGVDVILFGMYVYEYGHDCPQPNQRRVYVSYLDSIHYFRPRK 208
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A835YGT9_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGT9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.260e-32
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    4 EKANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPK 279
            E A  L+IR VS     H+VKP F RRY    N+PA F  RSKC++L QELDGVD LLFGMYVYEYGH C  PNQRRVY+SYLDSVHYF P+
Sbjct:  471 EPARKLHIRVVSNQDVTHVVKPNFARRYRAR-NFPAEFQARSKCVLLFQELDGVDCLLFGMYVYEYGHACGPPNQRRVYVSYLDSVHYFHPR 561
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A6S8EDF0_9STRA (Histone acetyltransferase n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8EDF0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.280e-32
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   10 ANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPKR 282
            A+ +Y+R++S +   H VK    ++Y    +YP+ FPVRSKC+VL QE+DGVDV+LFGMYVYEYGH CP PNQRRVY+SYLDS+HYFRP++
Sbjct:  706 ADGIYVRQLSNIDKTHQVKSRLIKQYENT-HYPSEFPVRSKCVVLFQEIDGVDVILFGMYVYEYGHDCPQPNQRRVYVSYLDSIHYFRPRK 795
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BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A7R9YAI7_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAI7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.110e-32
Identity = 61/94 (64.89%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 IEKANNLYIREVSVMGTVHLVKPGFQRRYGGD-GNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPK 279
            +EK   + IR VS +  VH V+  F +RY G+ G+YP  FPVRSKCIVL Q++DGVDV+LF MYVYEYGH CP PN+RRVYISYLDSVHY RP+
Sbjct:  918 VEKCPAMTIRMVSNVEKVHTVREKFLKRYRGEKGDYPEEFPVRSKCIVLFQKVDGVDVILFAMYVYEYGHKCPEPNRRRVYISYLDSVHYLRPR 1011
[Close]
BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A8J2ST16_9STRA (Histone acetyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST16_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.500e-31
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    7 KANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPK 279
            K   +Y+R++S +  +H VKP   +RY     YP  FP+RSKC++L QE+DGVDV+LFGMY+YEYGH CP PN RRVY+SYLDSV+YFRP+
Sbjct:  750 KPTPVYVRQLSNIDKMHQVKPKILKRYS-QHKYPCEFPMRSKCVLLFQEMDGVDVILFGMYLYEYGHKCPQPNNRRVYVSYLDSVYYFRPR 839
[Close]
BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Match: A0A835Z331_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z331_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.560e-30
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 NNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPKR 282
            N ++I+ VS     H+VK  F RR+   G +P+ F  RSKC++L QELDGVD LLFGMYVYEYGH C  PNQRRVY+SYLDSVHYFRP++
Sbjct:  125 NEIHIKVVSNQDVTHVVKANFARRFRARG-FPSEFLARSKCVLLFQELDGVDCLLFGMYVYEYGHACGPPNQRRVYVSYLDSVHYFRPRQ 213
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9196.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT9_ECTSI3.800e-4887.10Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KPY4_9PHAE3.830e-4887.10Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A482S4D2_9ARCH8.580e-3368.75Histone acetyltransferase n=1 Tax=archaeon TaxID=1... [more]
F0YI83_AURAN1.200e-3263.74Histone acetyltransferase n=1 Tax=Aureococcus anop... [more]
A0A7S3K383_9STRA2.080e-3261.54Histone acetyltransferase n=1 Tax=Aureoumbra lagun... [more]
A0A835YGT9_9STRA2.260e-3266.30Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A6S8EDF0_9STRA2.280e-3261.54Histone acetyltransferase n=2 Tax=Aureoumbra lagun... [more]
A0A7R9YAI7_9STRA3.110e-3264.89Histone acetyltransferase (Fragment) n=1 Tax=Pingu... [more]
A0A8J2ST16_9STRA9.500e-3159.34Histone acetyltransferase n=1 Tax=Pelagomonas calc... [more]
A0A835Z331_9STRA5.560e-3062.22Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9196contigA-nodosum_M_contig9196:11013..11861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LPT9
PFAMsBromodomain,HAT_KAT11,PHD,ZZ,zf-TAZ
Model size285
Max annot lvl2759|Eukaryota
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.23e-49
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota
EC2.3.1.48
Descriptionhistone acetyltransferase activity
Cds size285
COG categoryBK
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870380.5239437-CDS-A-nodosum_M_contig9196:11012..111431680870380.5239437-CDS-A-nodosum_M_contig9196:11012..11143Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9196 11013..11143 +
1680870380.5385406-CDS-A-nodosum_M_contig9196:11707..118611680870380.5385406-CDS-A-nodosum_M_contig9196:11707..11861Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9196 11708..11861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9196.6.1prot_A-nodosum_M_contig9196.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9196 11013..11861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9196.6.1

>prot_A-nodosum_M_contig9196.6.1 ID=prot_A-nodosum_M_contig9196.6.1|Name=mRNA_A-nodosum_M_contig9196.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
IEKANNLYIREVSVMGTVHLVKPGFQRRYGGDGNYPAGFPVRSKCIVLSQ
ELDGVDVLLFGMYVYEYGHTCPSPNQRRVYISYLDSVHYFRPKR*
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mRNA from alignment at A-nodosum_M_contig9196:11013..11861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9196.6.1 ID=mRNA_A-nodosum_M_contig9196.6.1|Name=mRNA_A-nodosum_M_contig9196.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at A-nodosum_M_contig9196:11013..11861+ (Ascophyllum nodosum dioecious)
ATCGAAAAAGCGAACAATCTTTACATCCGAGAAGTATCGGTGATGGGCAC
CGTTCATCTTGTCAAGCCGGGTTTCCAGCGGCGTTACGGTGGAGACGGAA
ACTATCCAGCCGGTTTCCCGGTCAGAAGCAAGTGAGTCAATCTACTCTTT
TGATCTCGAGGATGAACGGCCGGCCCATTTCTTCAATCTGTTTCAATTTG
TTTCAAATTTTATTTCACGACTTGTGATTAAAATTCGCGGGTAGAAATCG
AGGGTTTGTTGAACGAGTCGGGGGGGATCCTGGAATTTCTCTCCAGTTCA
GGGGGTACCGCAAGGGAGAAGTCCCTCCCAGGGATAGACTCGATAAAACC
CCTGATGTAATGAGTTGAGGTCGGGGCGGGCTTGCCTGTCATGTAGGGGG
GTCTTGCAGTACATCCCCAGGGGCGGAATCGTGAATAGGAGGAAAAAGCA
GCGTCGACCGTTCAGCAGTGCAGTGCACTCGAATTTTGTTTCACGAGACT
AAACCCTATACTAAAGCAGAAACAGAATCAAAACGAATCTCGGCTGGCCA
AATTTTTCACGTCCACGTTAGTACAGTTCTGTTTTGTATTTTAACTTGGA
GTCCTTTTTCCACTAATTATCCCACTTTTTTACAGAGTAATTAATGCCCA
TCGTATAGTCGCAACTCTTCAATAATCTCTATATATTATTTGCAGGTGCA
TCGTGTTGTCCCAGGAGCTTGATGGAGTTGACGTGCTGCTCTTCGGTATG
TATGTGTACGAATACGGGCACACGTGTCCATCGCCAAACCAGCGCAGGGT
TTATATAAGTTACCTGGACTCGGTGCATTACTTCCGTCCCAAAAGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9196:11013..11861+

>mRNA_A-nodosum_M_contig9196.6.1 ID=mRNA_A-nodosum_M_contig9196.6.1|Name=mRNA_A-nodosum_M_contig9196.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig9196:11013..11861+ (Ascophyllum nodosum dioecious)
ATCGAAAAAGCGAACAATCTTTACATCCGAGAAGTATCGGTGATGGGCAC
CGTTCATCTTGTCAAGCCGGGTTTCCAGCGGCGTTACGGTGGAGACGGAA
ACTATCCAGCCGGTTTCCCGGTCAGAAGCAAGTGCATCGTGTTGTCCCAG
GAGCTTGATGGAGTTGACGTGCTGCTCTTCGGTATGTATGTGTACGAATA
CGGGCACACGTGTCCATCGCCAAACCAGCGCAGGGTTTATATAAGTTACC
TGGACTCGGTGCATTACTTCCGTCCCAAAAGGTGA
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