mRNA_A-nodosum_M_contig9192.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9192.2.1
Unique NamemRNA_A-nodosum_M_contig9192.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.090e-23
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLR 195
            RS+TGKEGFPTIAY+VTVDH+GR LAVT GF GA NDKTI+RYD  V +IR  + YTER  +LR
Sbjct:  155 RSFTGKEGFPTIAYEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLR 218
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.060e-22
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLR 195
            RSYTGKEGFPTIAYQVTVDH+GR +A+T GF GA NDKTI+RYD  V  I+ +  YT+R  +LR
Sbjct:   32 RSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLR 95
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.160e-22
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLR 195
            RS+TGKEGFPTIAY+VTVDH GR LAVT GF GA NDKTI+RYD  V  IR  + YTER  +LR
Sbjct:    8 RSFTGKEGFPTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLR 71
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.470e-22
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLRGK 201
            R YTGKEG P+IAYQ  VDH+GR+LAVT+GFAGA NDKTI+ YD AV +IR +  YTE+V  L  K
Sbjct:   32 RQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDK 97
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.510e-22
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLR 195
            RSYTGKEGFPTIAYQVTVDH+GR +A+T GF GA NDKTI+RYD  V  I+ +A YT+R  +LR
Sbjct:   94 RSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLR 157
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.070e-22
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERV 183
            R YTGKEGFP+IAYQ  VDH+GRVLAVT+GF GA NDKTI+RYD AV  IR +  YTE+V
Sbjct:   27 RQYTGKEGFPSIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKV 86
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.480e-21
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLR 195
            RSYTGKEGFPTIAYQVTVDH+GR +A+T GF GA NDKTI+RYD  V  I+ +A YT+R  +LR
Sbjct:  341 RSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLR 404
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.150e-21
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLR 195
            RS+TGKEGFPTIAY+VTVDH+GR LAVT GFAG  NDKT +RYD  V +IR  + YTER  +LR
Sbjct:  223 RSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLR 286
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5KQK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.490e-21
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQLRGK 201
            R Y GKEGFP+IAYQ  VDH+G VLAVT+GFAG  NDKTI+RYD AV +IR +  YT++V  L  K
Sbjct:   33 RQYMGKEGFPSIAYQAIVDHTGHVLAVTKGFAGVMNDKTIIRYDTAVAKIRRDPVYTKKVYTLFDK 98
[Close]
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.650e-21
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 RSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQIRENATYTERVLQL 192
            R YTGKEG PT+A+QVTVDHSGRVLAVTRGF GA NDKTI+RYD AV +IR +  YTE+  +L
Sbjct:  174 RIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKL 236
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9192.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEF0_9PHAE8.090e-2370.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG32_9PHAE1.060e-2267.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE3.160e-2270.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J792_9PHAE3.470e-2265.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE4.510e-2268.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ66_9PHAE7.070e-2271.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JCU6_9PHAE1.480e-2168.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE2.150e-2168.75DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KQK3_9PHAE3.490e-2163.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE5.650e-2171.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9192contigA-nodosum_M_contig9192:7474..7674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size203
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.79e-20
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size201
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870380.1638255-CDS-A-nodosum_M_contig9192:7473..76741680870380.1638255-CDS-A-nodosum_M_contig9192:7473..7674Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9192 7474..7674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9192.2.1prot_A-nodosum_M_contig9192.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9192 7474..7674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9192.2.1

>prot_A-nodosum_M_contig9192.2.1 ID=prot_A-nodosum_M_contig9192.2.1|Name=mRNA_A-nodosum_M_contig9192.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=67bp
MRSYTGKEGFPTIAYQVTVDHSGRVLAVTRGFAGAHNDKTIVRYDDAVQQ
IRENATYTERVLQLRGK
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mRNA from alignment at A-nodosum_M_contig9192:7474..7674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9192.2.1 ID=mRNA_A-nodosum_M_contig9192.2.1|Name=mRNA_A-nodosum_M_contig9192.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at A-nodosum_M_contig9192:7474..7674+ (Ascophyllum nodosum dioecious)
ATGCGCAGCTACACCGGCAAGGAGGGGTTTCCGACGATCGCTTACCAGGT
TACGGTGGATCACTCCGGCCGCGTCCTTGCGGTTACCCGCGGCTTTGCAG
GGGCTCATAACGACAAGACGATAGTTCGTTACGACGATGCGGTACAGCAG
ATTCGCGAGAACGCGACTTACACGGAGAGGGTGCTTCAGCTTAGAGGCAA
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9192:7474..7674+

>mRNA_A-nodosum_M_contig9192.2.1 ID=mRNA_A-nodosum_M_contig9192.2.1|Name=mRNA_A-nodosum_M_contig9192.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=201bp|location=Sequence derived from alignment at A-nodosum_M_contig9192:7474..7674+ (Ascophyllum nodosum dioecious)
ATGCGCAGCTACACCGGCAAGGAGGGGTTTCCGACGATCGCTTACCAGGT
TACGGTGGATCACTCCGGCCGCGTCCTTGCGGTTACCCGCGGCTTTGCAG
GGGCTCATAACGACAAGACGATAGTTCGTTACGACGATGCGGTACAGCAG
ATTCGCGAGAACGCGACTTACACGGAGAGGGTGCTTCAGCTTAGAGGCAA
G
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