mRNA_A-nodosum_M_contig918.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig918.18.1
Unique NamemRNA_A-nodosum_M_contig918.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI)

HSP 1 Score: 142 bits (357), Expect = 3.380e-34
Identity = 98/284 (34.51%), Postives = 152/284 (53.52%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKE--AKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQG*F--GLWTQDDRLECGDAR-----------------------ITAAGTEAESLPYRR*SRMYYF*DRCSNYGM*LN------VFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKF 753
            DMG A++ +G  ITR+R ++++   Q  Y+E ++KRFN++    ++IP +S  + LS   EP++ EE+ +M   PY+EAVG+L++A+ ++RPDIA AV +V+RF  NPG AH  AV +I +Y+  T ++    DG +     G    D   +  + R                       +  + TEAE +     ++   +    S   M  +      +F DNEGA KLA N     RTKHIDV+HH VR+    + + + Y+ S +  AD LTKPLD +KF
Sbjct:  613 DMGAAKFVLGFQITRDRNSKKIWISQQAYLEQVLKRFNMENSNPSRIPMSSN-EKLSHQQEPKSEEERMKMNKIPYQEAVGSLLFASQVSRPDIAQAVNSVSRFNGNPGPAHWIAVKRILRYVRGTTDYKLQFDGNKSSVMHGYCDADWAADIDERRSLTGYIFVKCDAPISWCTKRQPTVALSTTEAEYMSLSAATQEALWLRGISLELMPASCIGPTRIFVDNEGARKLALNGAYQARTKHIDVRHHFVRERIQKKEIELEYIPSAEMVADSLTKPLDAEKF 895          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.800e-33
Identity = 99/298 (33.22%), Postives = 149/298 (50.00%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECG----------------DARITAAGTEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNVV 786
            ++G+  +++GC I+R+R+A  ++  Q  Y+ ++++RFN+ + + IPA       S A++ ++  E EE    P+RE VG LMW A  TRP+ + AVR VAR    P  +  KA  KI  YL  T     K   D         YVD     F     D R   G                   ++ + +EAE +      +  +F +      R S     ++VFEDNEGAI LA N  +S R+KHIDV+HH +R+ ++   + V +V S++QHAD+LTK L    F  H  F+L  V
Sbjct:   97 NLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDAD---FASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFVLGSV 384          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.920e-33
Identity = 106/304 (34.87%), Postives = 149/304 (49.01%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECGDARITAA----------------GTEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNVV*FDEVF 804
            ++G+  +++GC   R+R+A  ++  Q  Y+ S+++RFNV + + IPA       S  ++ ++  E E     P+RE VG+LMW A  TRPDI+ AVRAVAR    P  +H KA  KI  YLL T     K   D         YVD     F     D R   G   + A+                 +EAE L      +   F +      R S     ++V EDNEGAI LA N  +S R+KHIDV+HH +R+ ++   + V +V SE+QHAD+LTK L    F  H  F L    +  VF
Sbjct:  939 NLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDAD---FASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSRKYKSVF 1232          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.420e-33
Identity = 99/297 (33.33%), Postives = 141/297 (47.47%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWG--------------DYVDGGQG*FGLWTQDDR------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
            ++G+  +Y GC   RN++   L   Q  + + +   + V     +P +SGV+ LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P L H  A M I  Y   T  +G               Y D     F     D R      + CG   +          T + TEAE +      +   F  +   +     GM  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+  + + + V +V S  Q AD LTK L    F  H  F++N+
Sbjct:  175 NLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADAD---FASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A0A9Z147_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z147_LYGHE)

HSP 1 Score: 132 bits (333), Expect = 1.800e-32
Identity = 93/284 (32.75%), Postives = 146/284 (51.41%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAA---SGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQ-G*FGLWTQDDRLECGDARITAAG------------------------TEAESLPYRR*SRMYYF*DRCS-----NYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKF 753
            D+G+A+  +G  +TR+R+A+ +   Q  Y+E M+KRF++  +A  P     S  +  SK   PQ  +E+E M+  PY+EA+G+L++AA ++RPDIA A+ +++RF  NPG+AH   V ++F+YL  T  +    DG + G    +   D     D R +  G                        TEAE +     ++   +    S     +  +   +F DN+GA  LA N     RTKHIDV+HH +R+   A+ +   Y+ +    AD LTK LDV+KF
Sbjct:   89 DLGEAKSVLGFQLTRDRQAKRIWISQQHYIEEMLKRFHM--DAANPVTTPMSNSEKFSKNQAPQTADERERMRKIPYQEAIGSLLFAAQVSRPDIAFAISSLSRFNNNPGMAHWTGVKRVFRYLRGTSSYKLQFDGLKAGPIHGYCDADWASDPDERRSVTGYIFVKCNGPISWCTKRQPTVALSTTEAEYMAMSSAAQEGLWLRGLSEEIEQSSQIPTQIFCDNQGARNLALNGAYQPRTKHIDVRHHFLRERIQAKLLAFTYIPTNRMVADSLTKALDVEKF 370          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.510e-32
Identity = 100/296 (33.78%), Postives = 144/296 (48.65%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECGDARITAAG----------------TEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILN 780
            ++G+  +++GC   R+R+A  ++  Q  Y+ S+++RFNV + + IPA       S  ++ ++  E E     P+RE VG+LMW A  TRPDI+ A+RAV R    P  +H KA  KI  YLL T     K   D         YVD     F     D R   G   + A+                 +EAE        +   F +      R S     ++V EDNE AI LA N  +S R+KHIDV+HH +R+ ++   + V +V SE+QHAD+LTK L    F  H  F+L 
Sbjct:   41 NLGEVRFFLGCAFVRDREAGTIEISQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDAD---FASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLG 326          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.260e-32
Identity = 98/297 (33.00%), Postives = 147/297 (49.49%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGD--------------YVDGGQG*FGLWTQDDR------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
            ++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G++ LS+ D+       EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T + G               +VD     +     D R      + CG   I          T + TEAE +      +   F  +   +     GM  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+    + + + +V S  QHAD LTK L    F  H  +++++
Sbjct:  151 NLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDAD---YASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.200e-32
Identity = 104/296 (35.14%), Postives = 146/296 (49.32%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECGDARITAA----------------GTEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILN 780
            ++G+  +++GC   R+R+A  ++  Q  Y+ S+++RFNV + + IPA       S  ++ ++  E E     P+RE VG+LMW A  TRPDI+ AVRAVAR    P  +H KA  KI  YLL T     K   D         YVD     F     D R   G   + A+                 +EAE L      +   F +      R S     ++V EDNEGAI LA N  +S R+KHIDV+HH +R+ ++   + V +V SE+QHAD+LTK L    F  H  F L 
Sbjct:  672 NLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDAD---FASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFGLG 957          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.960e-32
Identity = 98/296 (33.11%), Postives = 149/296 (50.34%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQG*FGLWTQD------------DR-------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
            ++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G+  LS+ D+       EE+  +P+RE +G+L+W AT TRPDIA A+RAVAR+C +P   H +A + I  Y++ T + G  +  G+G   + + +            DR       + CG   I          T + TEAE +      +   F  +   +     GM  + VFEDN+ A++LA N  ++  +KHIDV+HH +R+    + + + +V S  QHAD LTK L V  F  H  F++NV
Sbjct:  842 NLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-VLSEFDQ------DEEVVSWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLG--ITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMNV 1128          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.500e-32
Identity = 99/297 (33.33%), Postives = 141/297 (47.47%), Query Frame = 1
Query:    1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWG--------------DYVDGGQG*FGLWTQDDR------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
            ++G+  +Y GC   RN++   L   Q  + + +   + V     +P +SGV+ LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P L H  A M I  Y   T  +G               Y D     F     D R      + CG   +          T + TEAE +      +   F  +   +     GM  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+  + + + V +V S  Q AD LTK L    F  H  F++N+
Sbjct: 1511 NLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADAD---FASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 1797          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5FV69_9HEMI3.380e-3434.51Uncharacterized protein n=2 Tax=Nesidiocoris tenui... [more]
A0A6H5JRE7_9PHAE3.800e-3333.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE3.920e-3334.87Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JFG2_9PHAE6.420e-3333.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9Z147_LYGHE1.800e-3232.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KBM6_9PHAE2.510e-3233.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.260e-3233.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE4.200e-3235.14Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5LC04_9PHAE5.960e-3233.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4N2_9PHAE6.500e-3233.33Integrase catalytic domain-containing protein n=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig918contigA-nodosum_M_contig918:138940..139863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo139221
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size885
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size408
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.993401-UTR-A-nodosum_M_contig918:138939..1389421680870376.993401-UTR-A-nodosum_M_contig918:138939..138942Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig918 138940..138942 +
1680870377.0151799-UTR-A-nodosum_M_contig918:139350..1393891680870377.0151799-UTR-A-nodosum_M_contig918:139350..139389Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig918 139351..139389 +
1680870377.0291426-UTR-A-nodosum_M_contig918:139428..1398631680870377.0291426-UTR-A-nodosum_M_contig918:139428..139863Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig918 139429..139863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870377.0046628-CDS-A-nodosum_M_contig918:138942..1393501680870377.0046628-CDS-A-nodosum_M_contig918:138942..139350Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig918 138943..139350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig918.18.1prot_A-nodosum_M_contig918.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig918 138943..139350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig918.18.1

>prot_A-nodosum_M_contig918.18.1 ID=prot_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGV
QTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVAR
FCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQG*
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mRNA from alignment at A-nodosum_M_contig918:138940..139863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig918.18.1 ID=mRNA_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at A-nodosum_M_contig918:138940..139863+ (Ascophyllum nodosum dioecious)
GACATGGGGGACGCCGAGTACTACATGGGTTGTCACATTACCAGGAACCG CAAGGCGCGTGAATTAAAGTTCGACCAACACCTATATGTGGAGTCAATGG TAAAGAGATTCAATGTCAAGAAGGAAGCCAAAATACCGGCTGCGTCGGGG GTGCAGACGCTCTCAAAGGCGGATGAGCCGCAAAATCCAGAGGAGAAGGA AGAGATGAAGATGTTCCCATACCGAGAGGCAGTGGGGGCACTCATGTGGG CGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGTGCTGTAGCC AGGTTCTGCGAAAACCCTGGGCTGGCACACAAGAAGGCAGTGATGAAGAT CTTCCAGTATCTTCTGCACACGAAAGAATGGGGGGATTACGTGGACGGTG GACAGGGCTGATTTGGACTCTGGACACAAGACGATCGGTTGGAGTGCGGT GTTGATGTTGGCCAAGGGAGCGATCAGTTGGCACTCGAGGATGCAAGAAT AACAGCAGCAGGAACGGAGGCAGAGTCGTTGCCTTATCGGAGGTAGTCAA GGATGTACTATTTTTGAGACAGGTGCAGCAATTATGGAATGTGATTAAAT GTATTTGAAGATAATGAGGGGGCCATCAAGCTGGCCACAAACAAGCATGC TAGCCGTAGGACTAAGCACATTGATGTAAAGCATCACCTAGTAAGGGACG CGTCTGACGCGCAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAA CACGCGGATTTGCTCACGAAACCGCTAGACGTGAAAAAGTTCTGTAAGCA CGCCAAGTTCATCCTAAATGTAGTGTGATTTGACGAAGTTTTTTTGTGCG GGCAAGTAGTGCGGATGACTTCGAGAGAATGATGGAGACTCACATGATCC AATAGAGTAAGTGGGGGTATTGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig918:138940..139863+

>mRNA_A-nodosum_M_contig918.18.1 ID=mRNA_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig918:138940..139863+ (Ascophyllum nodosum dioecious)
ATGGGGGACGCCGAGTACTACATGGGTTGTCACATTACCAGGAACCGCAA
GGCGCGTGAATTAAAGTTCGACCAACACCTATATGTGGAGTCAATGGTAA
AGAGATTCAATGTCAAGAAGGAAGCCAAAATACCGGCTGCGTCGGGGGTG
CAGACGCTCTCAAAGGCGGATGAGCCGCAAAATCCAGAGGAGAAGGAAGA
GATGAAGATGTTCCCATACCGAGAGGCAGTGGGGGCACTCATGTGGGCGG
CGACGATGACACGGCCGGATATCGCGTGCGCCGTACGTGCTGTAGCCAGG
TTCTGCGAAAACCCTGGGCTGGCACACAAGAAGGCAGTGATGAAGATCTT
CCAGTATCTTCTGCACACGAAAGAATGGGGGGATTACGTGGACGGTGGAC
AGGGCTGA
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