mRNA_A-nodosum_M_contig918.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig918.1.1
Unique NamemRNA_A-nodosum_M_contig918.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig918.1.1 vs. uniprot
Match: A0A6H5JK83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK83_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.200e-30
Identity = 75/152 (49.34%), Postives = 96/152 (63.16%), Query Frame = 1 
Query: 2602 DVVALMNQLQGVYLSLGNAPVWGGGSSRPGEEFAVVCGFSAALGPLLLERALDAVYGRKLFPTVTSLPLAHVIYMFRVYWQNEVSPFDAHDRFFRMVA------NPETGTITKMELEPFVLAIAERHPDLNSLSLEEVSQYVNTVLAVVFHR 3039
            D+  LM QLQG  L LG A VWGGG  R  E F+  CGFSAA GP++L+    AVYGR     VT LP+ HV+Y F  YW+ E+ P DA +RFF++V          +G I + EL  FVLAIA RHPDL++LS E    YV+TVL ++F++
Sbjct:  456 DLWPLMFQLQGWSLELGTADVWGGGIEREAEAFSAACGFSAAFGPIVLKLVTTAVYGRVFAGGVTVLPMNHVLYAFGQYWEKEIGPRDATERFFKLVKIDSGTRASSSGRIGREELRQFVLAIALRHPDLDALSPENKFIYVDTVLTILFYK 607
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BLAST of mRNA_A-nodosum_M_contig918.1.1 vs. uniprot
Match: D7FYR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR0_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.370e-29
Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 1 
Query: 2602 DVVALMNQLQGVYLSLGNAPVWGGGSSRPGEEFAVVCGFSAALGPLLLERALDAVYGRKLFPTVTSLPLAHVIYMFRVYWQNEVSPFDAHDRFFRMVANPETGTITKMELEPFVLAIAERHPDLNSLSLEEVSQYVNTVLAVVFHR 3039
            D+  LM QLQG  L LG A VWGGG  R  E F+  CGFSAA GP++L+    AVYGR     V+ LP+ HV+Y F  YW+ E+ P DA +RFF++V         K EL  FVLAIA RHPDL++L  +  S YV+TVL ++F++
Sbjct:  460 DLWPLMVQLQGWSLELGTADVWGGGVEREAEAFSAACGFSAAFGPIVLKLVTTAVYGRVFAGGVSVLPMDHVVYAFGQYWEKEIGPRDATERFFKLV---------KEELRRFVLAIALRHPDLDALPPDNKSIYVDTVLTILFYK 596
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BLAST of mRNA_A-nodosum_M_contig918.1.1 vs. uniprot
Match: A0A6U5KTW5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KTW5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.620e-7
Identity = 33/104 (31.73%), Postives = 60/104 (57.69%), Query Frame = 1 
Query: 2824 MFRVYWQNEVSPFDAHDRFFRMVANPETGTITKMELEPFVLAIAERHPDLNSLS--LEEVSQYVNTVLAVVFHRHSNC--GVLRSKDLKKSGFVASFNAVGRLE 3123
            MF  +W +E++P+D H+RFFR+V  P+   I + +  P+V  + + HP L+ LS   E   +Y  TV+  +F+  + C  G +  + +++S  + +F+AV   E
Sbjct:  215 MFERFWNDEMAPYDRHERFFRLVKRPDRRYIHQEDFHPYVQELLDYHPGLDFLSNHTEFQEKYAVTVITRIFYVVNRCHNGKITVRQIRRSNLLDAFHAVDEEE 318
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BLAST of mRNA_A-nodosum_M_contig918.1.1 vs. uniprot
Match: A0A7S1BWJ4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWJ4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.860e-7
Identity = 33/104 (31.73%), Postives = 60/104 (57.69%), Query Frame = 1 
Query: 2824 MFRVYWQNEVSPFDAHDRFFRMVANPETGTITKMELEPFVLAIAERHPDLNSLS--LEEVSQYVNTVLAVVFHRHSNC--GVLRSKDLKKSGFVASFNAVGRLE 3123
            MF  +W +E++P+D H+RFFR+V  P+   I + +  P+V  + + HP L+ LS   E   +Y  TV+  +F+  + C  G +  + +++S  + +F+AV   E
Sbjct:  215 MFERFWNDEMAPYDRHERFFRLVKRPDRRYIHQEDFHPYVQELLDYHPGLDFLSNHTEFQEKYAVTVITRIFYVVNRCHNGKITVRQIRRSNLLDAFHAVDEEE 318
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BLAST of mRNA_A-nodosum_M_contig918.1.1 vs. uniprot
Match: A0A448ZK08_9STRA (EF-hand domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK08_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.360e-7
Identity = 34/100 (34.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query: 2836 YWQNEVSPFDAHDRFFRMVANPETGTITKMELEPFVLAIAERHPDLNSLS--LEEVSQYVNTVLAVVFHRHSNC--GVLRSKDLKKSGFVASFNAVGRLE 3123
            YW+ E+ PFDA +RFFR+V  P+   I + +  P++ A+   HP L  LS   E   +Y  TV+  +F+  + C  G + S+ +++S  + SF+ V   E
Sbjct:  233 YWKKEMEPFDASERFFRLVKQPDEDCILRDDFLPYIKALLNDHPGLEFLSNHAEFQEKYAVTVITRIFYSVNKCHSGRITSRQVRRSDLLDSFSQVDEEE 332
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig918.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JK83_9PHAE2.200e-3049.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYR0_ECTSI1.370e-2949.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U5KTW5_9STRA4.620e-731.73Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BWJ4_9STRA5.860e-731.73Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A448ZK08_9STRA7.360e-734.00EF-hand domain-containing protein n=1 Tax=Pseudo-n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig918contigA-nodosum_M_contig918:1726..5362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps264058
PFAMsEF-hand_7
Model size3151
Max annot lvl2836|Bacillariophyta
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.72e-09
EggNOG OGsKOG2562@1|root,KOG2562@2759|Eukaryota,2XB0E@2836|Bacillariophyta
DescriptionEF-hand domain pair
Cds size744
COG categoryA
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.2602139-UTR-A-nodosum_M_contig918:1725..41311680870376.2602139-UTR-A-nodosum_M_contig918:1725..4131Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig918 1726..4131 +
1680870376.3087242-UTR-A-nodosum_M_contig918:5361..53621680870376.3087242-UTR-A-nodosum_M_contig918:5361..5362Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig918 5362..5362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.2722425-CDS-A-nodosum_M_contig918:4131..46471680870376.2722425-CDS-A-nodosum_M_contig918:4131..4647Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig918 4132..4647 +
1680870376.2825656-CDS-A-nodosum_M_contig918:4826..49481680870376.2825656-CDS-A-nodosum_M_contig918:4826..4948Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig918 4827..4948 +
1680870376.2937539-CDS-A-nodosum_M_contig918:5255..53611680870376.2937539-CDS-A-nodosum_M_contig918:5255..5361Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig918 5256..5361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig918.1.1prot_A-nodosum_M_contig918.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig918 4132..5361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig918.1.1

>prot_A-nodosum_M_contig918.1.1 ID=prot_A-nodosum_M_contig918.1.1|Name=mRNA_A-nodosum_M_contig918.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=248bp
MECKGGDGGGGGGRKHAPQRGKIQFQVRRYNVPGFRWPVDTRRPSAFLWG
QAQTHGQQGQGNDNSDVVALMNQLQGVYLSLGNAPVWGGGSSRPGEEFAV
VCGFSAALGPLLLERALDAVYGRKLFPTVTSLPLAHVIYMFRVYWQNEVS
PFDAHDRFFRMVANPETGTITKMELEPFVLAIAERHPDLNSLSLEEVSQY
VNTVLAVVFHRHSNCGVLRSKDLKKSGFVASFNAVGRLEMSLEVWLP*
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mRNA from alignment at A-nodosum_M_contig918:1726..5362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig918.1.1 ID=mRNA_A-nodosum_M_contig918.1.1|Name=mRNA_A-nodosum_M_contig918.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3637bp|location=Sequence derived from alignment at A-nodosum_M_contig918:1726..5362+ (Ascophyllum nodosum dioecious)
GACGCGGGACGGCACGTCTGAACCCGTCTCGCGAGACCAATTTCTCAGGT
GCGAACAGAGACATGGAAAAAATAGTCTTTCCCTAGTGAGCTGACCACAG
TCAGGATTGGCACCATACTCGGTTAATCCATACTCTTGTCTTGCTATGCT
GTATGTGATGGCCATACTAATAATGCCTAATAACACTTCAAACCAATAAC
AGGTAATAGGTATGGAAAATTATAGGCGCACATTAATTAGTCCATGGGGA
TGCAAGGGCAACACCCGTTACTGGAACTTCCTTGAAGACTACTATACTGA
CTCTGTTCCGGCGGACTCTCGGCAGTGAACGCCATGGGTACGCAATTGCG
TGACCCGATAAAGTCGGCACTGACCCGATCGCGTATGGCGATATAAATAA
ATGGATGCCGCCATGGAAATCGGGAGGATCCAGCGAGTAAGCACCAGATT
CAGCCTTAGTCTATGGAGAATGAGCAGGCTGGCGCAGGACGGGACAGCCA
AACCCGTCTCGCGAGATCAAATTCTCAGGCCCGAACGGAGACAGAAATAT
TTTCATTTTCTCTGTTAGGAGGATTGTCGATCGTACCCGGTTGATCCATA
CCCTGTTACATGTGATAACCATACATACAGACAGACAGACTCGGCCTCGT
ATCTGCTTTTATTGTTGGTTGAGAAAGATCTGCGAGCCTATCTGCACAAA
ATGTAAGCTCTGCCGTAGTGGGGCTCGCAATATTTTTTCCCGCTTTTACT
AGGAATACTTGAAATACTCATATTATGCTGTATTAATACGTCGCTGTTGG
GGAACGGAAATGGGTACAGTATTAGCTAATCTAAGGGTATGGCACAGACA
GACCTCAAAGCATGTTGTACAACGCAAAGAGGAAGCCTTAGTGAGGAAGT
GGTGATCCAAGCAACTAACAGCCCTTATAGCCTCACCAAAATCTCCCAAA
TCTGGCGATCAGTAGCCCTGCAAGGACCTTGATAGTCAGGTCAGTACCAG
GTACCAAGCAGAGCACGCAGGATGCAGGCGCGCGGTGTACGAAAAACGTT
GCATTGGGGTTGCCTTTGTACACGTACTTGATACTACTTGTTTCGAAGCA
CTTTATTTCCAATACCAAAGCTGCGATGTACAGTATTCTCGCAGCGTCAG
CGGTAGAGACCACGAGACATGAATCAGCTCTGCCGGTAGAGTAGCCCTTG
TTAGGCTGCGGCATCCATTAATTCTTGGGCGAGGGGGGCGGTACTGGTGA
TGTCTGGTGTTGAAGCCTGTTCGAAAAGTCGACCTCGATTTGGTTTTGAC
CCTTTGACTGTATATCCTACGATCGAGTTGGATTTACCAATACTTGAACC
TGATAGCTAACCCAGCATAACGAACGGGGACAGGGAGAAATTCATCTTCC
TGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGTTTGATCCATA
CCCTTGCCACAGTATATGTGATGACCATATAGCATAGTAACTGATTTGTA
ACTTTGTTGAGCGTGTACTGGTGCCCCTGGTTTGGTGCATTTGCTTGAAT
GGCGTTGTTTTTGATTGATTGAACTCTCACACAAGCTGATGTGTGTAAGT
GTTTAAATAGTATAACGGTAGGTTTATTTCTCCCCGACACCTCTTGTAGG
ACATTGGGAAACCCAAATGAATCCCTTCAAGACCTCTTGTCTTTGCAGAC
TATGTGCCCACCTTAATTTTACAGTCTCCATATACTTGTAACATAACTAT
TTTTATTTTTTTCAGCGTTGACTTTTACCTAGAGCTGTTTTGGTGTACCT
ACATGGCGATTATTGTAAGTGTACGAAATAACGGTGGGTTTCTCCCCGAT
ATGTCAATATACTGTTGACCCGATGCTACTACAGTATTTAATACCACCAT
TCATTGGGGAACATTGACCAATTAAATCCCATGAAGAGGTAGGTTTTGTC
CTTATAGTCTATGCCCCCACCTAAACGTTTTGACATGGTCATAACCCCCT
GACTGAGCGGATGCTCAGAATGACATAATGATGATGGTTTAGATGCCTTA
GTTTCAGATTTTTCTTCAAATTTATTTTGAGCTATTTTTCTTCAAATTTA
TTTAGATGCCTACAATACTGCTGTAGCTCTAGCTCTATGCTATGCGGTTG
CCAGTCCGATTCGTGTTATTAATGCTGTTAATCCTGTTATTAATGCTATT
ATTCTAGATAAGAGAAATACGAGAAAACAAACGATATGCACACCTTGTCA
CAACGAAGGTAGCGGGGGTCATTGCTGCGGAAGAGGTTCGGCGACGGCAT
CTTATAACAACGGTGTCAGTGGAGGACGCGGCGGAAATGGAGGTGATGAC
GACGGCGCCGACGGGGCGCAGGCGATGGCCGGGGAGGTCGACGGGCTGCG
AGTGATATGGAATGTAAAGGAGGCGATGGCGGTGGAGGAGGTGGTAGAAA
ACATGCTCCCCAAAGAGGCAAGATACAATTTCAAGTCAGACGCTACAACG
TACCCGGGTTTCGCTGGCCAGTGGACACCAGACGCCCATCTGCATTTTTG
TGGGGGCAGGCTCAGACTCATGGACAACAGGGGCAGGGCAATGACAACAG
CGATGTGGTTGCCCTTATGAACCAGCTCCAAGGAGTATATCTCAGCTTGG
GAAATGCACCGGTTTGGGGCGGTGGGTCTTCGCGGCCGGGCGAGGAGTTT
GCCGTGGTCTGCGGCTTCTCGGCGGCGTTGGGTCCGCTGCTCTTGGAACG
TGCACTCGACGCCGTGTACGGCAGGAAGCTCTTCCCTACCGTAACATCGC
TTCCCCTAGCGCATGTTATATACATGTTCAGGGTTTATTGGCAAAATGAA
GTTTCACCCTTTGACGCACACGATCGCTTCTTCCGAATGGTCGCCAACCC
CGAGACCGGCACCATCACCAAGGTACAGTTTAGTTCGATAAAGTACAGTA
CGGAATGGAACAGTACTGTATAGAACTGAAGGCTATGAAAGCCCCTTGAC
TGTCACGCCTGCTTCGACCCACATGTTTCCCTTGTCCTTGTGTGTCACGC
CTCCGTTTCCCCCGTCTTCTACCAACGTGCCCACCACACCCTCGCCCCTA
GATGGAGCTTGAGCCGTTCGTTCTTGCCATAGCGGAGAGGCACCCCGACC
TTAACTCCCTGTCCCTGGAGGAAGTGTCACAATATGTGAACACTGTGCTG
GCTGTGGTCTTCCACAGGCACAGGTGGGTTGAATAGAGAGAGGTACCGTA
CTTGGTGGCAATGGATGCGACTTACCGATACCATACCGTATTGTAGAAGG
CTTTCGGCTTCCGCTATGCAACGAAGCTTCTACCACCAATAGGGTACCCT
ACTCTTCTACCCGATAGTTCACTTGTCGGTAGTACCCCGGCGGTGAGTCC
CGAGTTCCTTGTCTCTCCCCGCTCCAGCCCGCTGACCCACCATCATTTCA
TTGAGATAAATAATCTGACCAATTTCGACGATACGCTACGGCCTGTCATG
CATGTTCCTCATGTTGCCGCTATGTTCCAGCAACTGCGGCGTCTTGAGGT
CGAAGGACCTCAAGAAAAGCGGATTCGTAGCTTCCTTCAACGCGGTCGGC
CGGCTGGAAATGTCTCTTGAGGTTTGGTTACCATAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig918:1726..5362+

>mRNA_A-nodosum_M_contig918.1.1 ID=mRNA_A-nodosum_M_contig918.1.1|Name=mRNA_A-nodosum_M_contig918.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at A-nodosum_M_contig918:1726..5362+ (Ascophyllum nodosum dioecious)
ATGGAATGTAAAGGAGGCGATGGCGGTGGAGGAGGTGGTAGAAAACATGC
TCCCCAAAGAGGCAAGATACAATTTCAAGTCAGACGCTACAACGTACCCG
GGTTTCGCTGGCCAGTGGACACCAGACGCCCATCTGCATTTTTGTGGGGG
CAGGCTCAGACTCATGGACAACAGGGGCAGGGCAATGACAACAGCGATGT
GGTTGCCCTTATGAACCAGCTCCAAGGAGTATATCTCAGCTTGGGAAATG
CACCGGTTTGGGGCGGTGGGTCTTCGCGGCCGGGCGAGGAGTTTGCCGTG
GTCTGCGGCTTCTCGGCGGCGTTGGGTCCGCTGCTCTTGGAACGTGCACT
CGACGCCGTGTACGGCAGGAAGCTCTTCCCTACCGTAACATCGCTTCCCC
TAGCGCATGTTATATACATGTTCAGGGTTTATTGGCAAAATGAAGTTTCA
CCCTTTGACGCACACGATCGCTTCTTCCGAATGGTCGCCAACCCCGAGAC
CGGCACCATCACCAAGATGGAGCTTGAGCCGTTCGTTCTTGCCATAGCGG
AGAGGCACCCCGACCTTAACTCCCTGTCCCTGGAGGAAGTGTCACAATAT
GTGAACACTGTGCTGGCTGTGGTCTTCCACAGGCACAGCAACTGCGGCGT
CTTGAGGTCGAAGGACCTCAAGAAAAGCGGATTCGTAGCTTCCTTCAACG
CGGTCGGCCGGCTGGAAATGTCTCTTGAGGTTTGGTTACCATAA
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