mRNA_A-nodosum_M_contig9121.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9121.1.1
Unique NamemRNA_A-nodosum_M_contig9121.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: D7FZL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL8_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.640e-65
Identity = 154/326 (47.24%), Postives = 183/326 (56.13%), Query Frame = 1 
Query:  739 VAVSDDFLTKVQDGLIEVRPRLVAVDAYERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPTDYVDMMEVLAMVAGLIPLSSPLLHRQYRSLATGLPYTLQAAPPTSEVRHDTTASLGADSSKDPRSSIDIDDVLRSPKQRTACVDLLPRGRKTRVVEGSDAILMRGMDHLVEWMWSGPLLPCHYFILPHLTKDSPTSDGDVID------KFQDHGGGRDGMRVGLKGALSELRSVNIK 1698
            V VSDDFL +V+DG IE+R RLVA+D  ER  RF+DG  E+VDHVI CTGLRP L FL   VL QLEH+  DLLQPLIL  Q W   VPDL FVGVYRGPYFGVMELQARW  RMW G V  P  T S AAL+ESR VR   PRPQFPTDYVDMME LA VAGL+P        + + L++          P+S V         ADS +          ++RS +  +        GR+    EG DAI +     L E MWSGPLLPCHY  L HL   +   D   ++       F             ++ A++E+  VN K
Sbjct:  330 VVVSDDFLDRVRDGCIEIRQRLVALDTTERTVRFSDGKVEKVDHVILCTGLRPSLEFLPGDVLGQLEHDKGDLLQPLILHLQAWNPSVPDLGFVGVYRGPYFGVMELQARWIARMWSGAVPMPTETESAAALQESRSVRTVIPRPQFPTDYVDMMEGLAGVAGLLP-------SKRKDLSSS---------PSSAVSPVNCLGEIADSEE-------FVAMMRSQRPLSGAKGTA--GREGGSEEG-DAIGV-----LNERMWSGPLLPCHYR-LQHLDGRASPCDTTNVEGSARAVDFSSRAHCTKSRHEVMREAIAEIGEVNAK 623
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A6H5KU92_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU92_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 2.600e-62
Identity = 147/312 (47.12%), Postives = 168/312 (53.85%), Query Frame = 1 
Query:  727 RPP-------HVAVSDDFLTKVQDGLIEVRPRLVAVDAYERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPTDYVDMMEVLAMVAGLIPLSSPLLHRQYRSLATGLPYTLQAAPPTSEVRHDTTASLGADSSKDPRSSIDIDDVLRSPKQRTACVDLLPRGRKTRVVEGS----------DAILMRGMDHLVEWMWSGPLLPCHYFILPHLTKDSPTSDGDVID 1611
            RPP       H  ++  F +KV+DG +E+R RLVA+D  ER  RF+DG  E+VDH+IFCTGLRP LGFL   VL QLEH+  DLLQPLIL  Q W   VPDL FVGVYRGPYFGVMELQARW TRMW G V  P    S AAL+ESR VR   PRPQFPTDYVDMME LA VAGL+P                                    S   D S  P S++   D L         V ++   R     +G+          DAI       L E MWSGPLLPCHY  L HL  D+  S  D +D
Sbjct:  745 RPPRRVLLRVHFEMTGPF-SKVRDGCVEIRQRLVALDTTERTVRFSDGDVEKVDHMIFCTGLRPSLGFLPGDVLRQLEHDKGDLLQPLILHLQAWNPSVPDLGFVGVYRGPYFGVMELQARWITRMWSGAVPMPTEAESAAALQESRSVRTATPRPQFPTDYVDMMEGLAGVAGLLP------------------------------------SNRKDLSSSPSSAVSPVDCLGENADSAELVAMIQSQRPLSGAKGTTGREGASEERDAI-----GALNERMWSGPLLPCHYR-LQHL--DARVSPCDTMD 1011
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A7S1RHE0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RHE0_ALECA)

HSP 1 Score: 135 bits (341), Expect = 2.970e-32
Identity = 77/170 (45.29%), Postives = 99/170 (58.24%), Query Frame = 1 
Query:  733 PHVAVSDDFLTKVQDGLIEVRPRLVAVDAY-ERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPT-DYVDMMEVLAMVAGLIP 1236
            P VA++D FL  V+ G   V+ R+ +V+ + +    F+DG +EE D VI  TG R  L FL  +    LE +PDD LQP IL    W    P LAFVG+YRGPYF  +ELQARWA  ++ G + PP        L   R +RA+ PRPQFP  DYV M+E LA   G+ P
Sbjct:   52 PFVAITDSFLDAVRAG--SVKARVASVEGFGDNSVVFSDGASEEFDDVILATGYRLELPFLPPAARSALELQPDDQLQPAILHEAVWPLGPPRLAFVGLYRGPYFAAIELQARWACGVFSGRLPPPASQELADGLELERRIRAQRPRPQFPHGDYVGMVEALAKHVGVHP 219
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A7S1A8L0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A8L0_NOCSC)

HSP 1 Score: 135 bits (340), Expect = 2.560e-31
Identity = 77/169 (45.56%), Postives = 100/169 (59.17%), Query Frame = 1 
Query:  733 PHVAVSDDFLTKVQDGLIEVRPRLVAVDAYERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPT-DYVDMMEVLAMVAGLIP 1236
            P VA++D F+    +G + VR  +V+V        FADG  E+ D VI  TG  P L F+ + +L  +E +P+DLLQP IL    WR  +P LAFVG+YRGPYF  +ELQARWA  ++ G + PP      A L   R VR + PRPQFP  DYV M E LA + G+ P
Sbjct:  141 PFVAITDTFVDVCNEGTVVVRDAVVSVSG--PSVTFADGHKEDFDVVISATGYLPSLHFIGE-LLKSVEFDPNDLLQPTILHECVWRPELPALAFVGMYRGPYFAAIELQARWACGVFSGRLPPPVEEEVRAGLEAERRVRDQVPRPQFPHGDYVGMAERLAKLVGVHP 306
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A813EY66_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EY66_POLGL)

HSP 1 Score: 138 bits (347), Expect = 3.110e-31
Identity = 81/170 (47.65%), Postives = 99/170 (58.24%), Query Frame = 1 
Query:  733 PHVAVSDDFLTKVQDGLIEVRP-RLVAVDAYERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPT-DYVDMMEVLAMVAGLIP 1236
            P VA+SD FL   +  L++VRP  +V  D     A FA G+ EE D VI  TG R  L F S S L  +E +  DLLQP IL        +P LAFVG+YRGPYF  MELQAR+A  ++ G +  P P    A L E R +RAK PRPQFP  DYV M + LA + G+ P
Sbjct:  277 PFVAISDAFLDAARKKLVKVRPSEVVGFDG--AAAIFACGSREEFDAVIVATGYRLSLPFFSSSTLQTMEFDSTDLLQPAILHSCILHPGLPGLAFVGIYRGPYFATMELQARYALGLFSGRLQQPTPEVFSAGLAEERQIRAKRPRPQFPHGDYVGMTDSLAKLVGVHP 444
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A212JHN2_9PROT (Uncharacterized protein n=1 Tax=uncultured Alphaproteobacteria bacterium TaxID=91750 RepID=A0A212JHN2_9PROT)

HSP 1 Score: 136 bits (342), Expect = 1.280e-30
Identity = 74/171 (43.27%), Postives = 99/171 (57.89%), Query Frame = 1 
Query:  730 PPHVAVSDDFLTKVQDG-LIEVRPRLVAVDAYERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPT-DYVDMMEVLAMVAGLIP 1236
            P  V  SDDFL  V DG ++  R R  A D  ++   ++DGT +++D V+ CTG    L FLS  +L  +E +P D LQP++L HQ +   +P LAFVG YRGPYF VMELQ+RW  R+  G   PP      A +   R +R + PRPQFP  DYV + +  A   G+ P
Sbjct:  272 PMTVVTSDDFLALVGDGKVVAKRSRAFAFD--DKGVLYSDGTRDDLDAVVMCTGYSSALPFLSPEILAAVEFDPRDQLQPVLLHHQVFHPDLPGLAFVGYYRGPYFPVMELQSRWVARIAAGETAPPSLAEMRAGVEIERVIRNRRPRPQFPHGDYVRLADGFAREVGVFP 440
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: R1BSZ2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BSZ2_EMIHU)

HSP 1 Score: 130 bits (326), Expect = 1.580e-28
Identity = 76/178 (42.70%), Postives = 103/178 (57.87%), Query Frame = 1 
Query:  718 RLPRPPHVAVSDDFLTKVQDGLIEVRPRLVAVDAYERK-ARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAA--LRESRGVRAKHPRPQFPTDYVDMMEVLAMVAGLIPLS 1242
            R  R P VA++D+    V  GL+ V+     V A ER    F DG   E D ++  TG R  + FL+ ++   +E++ DD LQPLI     W A  P+LAFVG+YRGPYFGV+ELQARWA  ++ G +  P P+A + A  L   R +R   PRPQFP DY  M + LA   G +P++
Sbjct:  243 RTDRKPRVAITDELSRAVSAGLLSVQT--ARVRACERGWVTFEDGRRAEFDVILAATGYRTAVNFLAPALSEAVEYDADDWLQPLIAHECVWPAA-PNLAFVGMYRGPYFGVLELQARWACGVFAGRL--PMPSAGELADGLARERAIRQMDPRPQFPHDYPTMADDLARHVGALPVT 415
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A7S4PXJ1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PXJ1_9DINO)

HSP 1 Score: 129 bits (323), Expect = 4.080e-28
Identity = 74/170 (43.53%), Postives = 95/170 (55.88%), Query Frame = 1 
Query:  733 PHVAVSDDFLTKVQDGLIEVRPRLVAVDAYERKAR-FADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPT-DYVDMMEVLAMVAGLIP 1236
            P V ++D FL  ++ G   VR R+  V+ +   +  F+DGT+E+ D VI  TG R  L FL       LE  P+D LQP IL    W   +  LAFVG+YRGPYF  MELQARW   ++ G +  P P    A L   R +R + PRPQFP  DYV M+E LA   G+ P
Sbjct:  272 PFVTITDSFLDSLRAGT--VRARVAGVEHFRGSSVVFSDGTSEDFDDVILATGYRLELPFLPPEARDALELRPEDGLQPAILHEAVWPRGLAGLAFVGLYRGPYFAAMELQARWVCGVFSGRLPAPAPEELAAGLEVERQIREQRPRPQFPHGDYVGMVEALAQRVGVHP 439
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A6A8QHD0_9PROT (SidA/IucD/PvdA family monooxygenase n=1 Tax=Telmatospirillum sp. TaxID=2079197 RepID=A0A6A8QHD0_9PROT)

HSP 1 Score: 127 bits (319), Expect = 1.480e-27
Identity = 69/170 (40.59%), Postives = 93/170 (54.71%), Query Frame = 1 
Query:  730 PPHVAVSDDFLTKVQDGLIEVRPRLVAVDAYERKARFADGTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPT-DYVDMMEVLAMVAGLIP 1236
            P  +A++D+FL ++  GL+ V+ R   +       RFADG+  +VD V+ CTG    L F    +L  L     D  QPL+L    +   +P L FVG YRGPYF VMELQARW   +  GL+ PP        +  SR +R K PRPQFP  D+VD+ + LA   G+ P
Sbjct:  273 PATIAITDEFLRQIGAGLLSVK-RSSGITFAATGVRFADGSRRDVDAVVMCTGYTATLPFFDSDLLDILAFHAGDQFQPLLLHRDMFHPALPGLFFVGQYRGPYFPVMELQARWIAGIAAGLMPPPSDAEMAEGIAVSRRLRHKQPRPQFPHGDFVDLADGLARTIGVYP 441
[Close]
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Match: A0A2X3KK38_9ACTN (Uncharacterized protein n=1 Tax=Frankia sp. Ea1.12 TaxID=573499 RepID=A0A2X3KK38_9ACTN)

HSP 1 Score: 125 bits (314), Expect = 6.550e-27
Identity = 70/172 (40.70%), Postives = 99/172 (57.56%), Query Frame = 1 
Query:  730 PPHVAVSDDFLTKVQDGLIEVRPRLVA--VDAYERKARFAD-GTTEEVDHVIFCTGLRPCLGFLSQSVLHQLEHEPDDLLQPLILEHQTWRACVPDLAFVGVYRGPYFGVMELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPTDYVDMMEVLAMVAGLIP 1236
            PPHV VSD   T+V +G    R R+VA  V   ER A   D G   + D VI+CTG RP L FL ++V   +E++P D+ QP++L    +   +P L+FVG+YRGPYFGV+ELQARW   +    V  P P      +  +R  R   PRPQFP + ++  + +  + G++P
Sbjct:  274 PPHVVVSDTVGTEVVEG----RLRVVAGRVRRLERSAVVLDDGRRVDADAVIWCTGYRPDLTFLPRTVSRAVEYDPTDIFQPVLLADAVFPQEIPGLSFVGMYRGPYFGVVELQARWVCAVMASAVPSPAPLERARGVGTARETRLARPRPQFPHNDLEQADRIGRILGVLP 441
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9121.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL8_ECTSI1.640e-6547.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU92_9PHAE2.600e-6247.12Reverse transcriptase domain-containing protein n=... [more]
A0A7S1RHE0_ALECA2.970e-3245.29Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1A8L0_NOCSC2.560e-3145.56Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A813EY66_POLGL3.110e-3147.65Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A212JHN2_9PROT1.280e-3043.27Uncharacterized protein n=1 Tax=uncultured Alphapr... [more]
R1BSZ2_EMIHU1.580e-2842.70Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S4PXJ1_9DINO4.080e-2843.53Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6A8QHD0_9PROT1.480e-2740.59SidA/IucD/PvdA family monooxygenase n=1 Tax=Telmat... [more]
A0A2X3KK38_9ACTN6.550e-2740.70Uncharacterized protein n=1 Tax=Frankia sp. Ea1.12... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9121contigA-nodosum_M_contig9121:5700..11742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZL8
PFAMsFMO-like
Model size1907
Max annot lvl2759|Eukaryota
KEGG koko:K14003
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.29e-19
EggNOG OGsCOG2072@1|root,KOG1399@2759|Eukaryota
DescriptionN,N-dimethylaniline monooxygenase activity
Cds size663
COG categoryP
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9121.1.1prot_A-nodosum_M_contig9121.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9121 5894..10178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870367.411394-UTR-A-nodosum_M_contig9121:5699..58931680870367.411394-UTR-A-nodosum_M_contig9121:5699..5893Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9121 5700..5893 -
1680870367.4712946-UTR-A-nodosum_M_contig9121:10178..103671680870367.4712946-UTR-A-nodosum_M_contig9121:10178..10367Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9121 10179..10367 -
1680870367.4843855-UTR-A-nodosum_M_contig9121:10605..111101680870367.4843855-UTR-A-nodosum_M_contig9121:10605..11110Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9121 10606..11110 -
1680870367.4988463-UTR-A-nodosum_M_contig9121:11386..117421680870367.4988463-UTR-A-nodosum_M_contig9121:11386..11742Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9121 11387..11742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870367.4314466-CDS-A-nodosum_M_contig9121:5893..64211680870367.4314466-CDS-A-nodosum_M_contig9121:5893..6421Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9121 5894..6421 -
1680870367.445351-CDS-A-nodosum_M_contig9121:9744..98621680870367.445351-CDS-A-nodosum_M_contig9121:9744..9862Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9121 9745..9862 -
1680870367.4574845-CDS-A-nodosum_M_contig9121:10161..101781680870367.4574845-CDS-A-nodosum_M_contig9121:10161..10178Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9121 10162..10178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9121.1.1

>prot_A-nodosum_M_contig9121.1.1 ID=prot_A-nodosum_M_contig9121.1.1|Name=mRNA_A-nodosum_M_contig9121.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=221bp
MELQARWATRMWGGLVNPPPPTASDAALRESRGVRAKHPRPQFPTDYVDM
MEVLAMVAGLIPLSSPLLHRQYRSLATGLPYTLQAAPPTSEVRHDTTASL
GADSSKDPRSSIDIDDVLRSPKQRTACVDLLPRGRKTRVVEGSDAILMRG
MDHLVEWMWSGPLLPCHYFILPHLTKDSPTSDGDVIDKFQDHGGGRDGMR
VGLKGALSELRSVNIKYGII*
back to top

mRNA from alignment at A-nodosum_M_contig9121:5700..11742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9121.1.1 ID=mRNA_A-nodosum_M_contig9121.1.1|Name=mRNA_A-nodosum_M_contig9121.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6043bp|location=Sequence derived from alignment at A-nodosum_M_contig9121:5700..11742- (Ascophyllum nodosum dioecious)
CCGGGAGTACATCGAAGATTACGCGACGGCCTTCGATCTCCGCAAATTCG
TTCGCTTTGGCCACGTGGTCACCAGCGTCTCCAAGTCTTCGACAGGTGCC
TGGGACGTGGAGTTTACGGCGAGGTCAACCCCTCAACAGGGCAAAGCGAA
TGATCGCCACACGGAGACCTTCGACAAGTGCATCGTGGCATCTGGAATTT
TCAGAACCTTACTTCCTCTCCCCGAGTAAGGTGCAGGAATCCCAGATGCG
GTGCAGTCCGGTGGGCTACTCACGGAGCGGCCTATCGATCCTCTTTTCGC
TGGGAAGACGGTGCTCGTCGTGGGGTGCGCGTTTAGCGGGGCTGAAATCG
CCAGCGGTAAGTGCAGAATAGTACATTAGGGCGACCACATTCCGAACATG
TTACATATGACTCAAGTGTAACGTACGTGAATGAGTTTTGGTCTATATTA
AAGCTCTAGACCTATGGCCCATTATTTGTATGTCCACTACAGTACATACA
GTACGATGCCAGCTGAGCTCTGAACCATTGAAGCGAACGCTCCATTTGTT
TTCTGTGCATCCACCGCGTCGAGGTGATGCTTGACATTCGGTTTTGCTTG
ACTTGCGGGCGACGCGTTTCGAGCTGCCCCAGACCTGGCAGGAACGACGT
TGAGATGCCTGGCAGCGTCGGGTCGACCATCCTTGTTCGTGCCCCGCCTC
ATTTTCAAGAGAGAAGAGCGTGGTGCACGCGCATGCCGTGGAGATGGTTC
AACCCCAACGGCCGGACAAGAGGGCAATAGCAGCTGTGTTGAGGTCAGAG
ATGGAGGAATTGGAGAATCGTCTACACGTCTGGTGCCGCTAGACATGGCG
CTGTACTCGAGAAAAGGCAGGACGGAGTATAAGGCAAGTACAACGAGCCC
TGAAGACAAGATTAGAGCTGCTCAAACGTTTTTACTCAGTTAACCAACAA
GGATCCCGGCGAAGTACAATGATCTCAAGTTGGATGGCGATAGCGATTGC
CCAGGCCGCCACATGTGGCAGTTTCGGATGATTTCCTGACTAAGGTGCAG
GACGGACTGATCGAAGTGCGGCCGAGACTGGTCGCCGTTGACGCCTACGA
GAGGAAAGCGCGCTTCGCCGACGGCACCACCGAAGAGGTGACACTTATTT
TTTTCCATGCGTCTTTCTTGTGAAAATTCGGGCTCTCCTTTAGCGAGCTT
TGCTCCGTGAAGACAAATATCTGGGAGTAGCGTCGGCTCCCCGAGGGCCA
CTCCTCACCTCACCACCTATCTTGCAGGAACCCTAACCTCAGATGACATT
ATAAATTGCACAATTTAACGCGTGTCGCGTTGTGACCCAGGAACTCTCGT
TCGTCCTAACACTCCTTCGCCCCAGGTGGATCACGTTATTTTCTGCACGG
GACTGCGGCCATGTCTTGGTTTTTTGTCGCAGAGCGTGTTGCACCAGCTC
GAGCACGAGCCAGACGACCTGCTGCAGCCACTGATTCTCGAGCACCAGAC
CTGGAGAGCTTGCGTGCCTGACCTCGCCTTTGTAGGGGTTTACCGGGGGC
CTTACTTCGGCGTTATGGAGCTCCAAGCACGGTGAGTTTGGCCTCATGTA
ACGCTTTTAGCAGTACAGTTTTTCAAGAGTGTTCTCCGAAAGTGTTCTTC
AATGCATGAACTCTCCGAATCACTCGCGCATACAGATACATGCATGGTCT
CCAGCTAGCTTTGGTCGTGAACGCTGTAACATTTGATTTTACCACGTGTG
GGAAGTGAAATAAGTGGCCACTGCTACACATACGCGCGCTTCTACAGTAT
GTGAGTATGTTAGAGAGACATAAAGAGAAAACAACCTTGTCCTGTGCGAC
TCCGTTTCTTCCGTTCATGGGGAGATTCAGGTGGGCGACTCGTATGTGGG
GTGGCCTAGTGAATCCTCCTCCACCGACGGCGAGTGACGCTGCCCTGAGA
GAGAGCCGGGGCGTGAGGGCGAAACATCCCCGTCCTCAGTTCCCCACGGT
GAGACCGTACCTTCAGGGTAGATCTTCACAGTTTGTAGAGAAAAATGATT
TGTGTTGCGGCGACCCTCCATCATGTACTATGGCTTTGAGAAAAAAAGTC
AACGAGTGCAATGGCAGCATTCAGAAAGAGACAGGATTTGAGCTAAGATA
ATGACAGCAACCAACAGCAGTGAGCAAAACGCCTGTGAAGAATATACTTA
GGTGCACAGCTGTGACCGCTGTAGTGGTTAGGATGGGGATCTTTCCCTCA
TCATTCTGAGGTGAAAAAGAAAGTACCCAACTTATTTTGTGGGCATTTGG
ACCTCCCGCCTTCTAGGCGAATCCATAGATCTCCGCGCAACCACAAAGAT
AGGAACAAGGACATCTTACCCCGAGCGTTTGAGCGACGAGTCCGCCCCTC
GCGTGAACGATATCGATCGCGATAATAACTGAGACCTCGAACCCGCGCCA
TATTAAGTAGAGCAAGACAAATTCGTACAGGGATGTAGACGTGAGGCTCA
CGGAGATGATGATACGGTGACACTTCGACCGGAGAAAACTTTTGACCACG
TTCTCGAAACTAGCATGAGAGAACGGTCGAGCCAAGTCGCGTTCACCGAG
GTGTTCGTGGCCGCATCCCATGACGGTCAGCGGTCGGCGAAAGACGATTT
GTTTGTGCTGATAGGCTGCAGGGGGTAAGCCACCAGTGGGGAATCGGATC
GTTCGGCCACCGGTGGCGCTCATGTGCCGTCATCGCCGGTCACATGCAAC
AAAAATCACTGCCCTCAACGCTGCAGCCGTCACCATGCAGTCGGGCGTCG
GCGATGCTATTCTTCCTTTGGATTCAAATGCTAGGCCGTGAGTTATAGCA
GCTTGAATGAAACGTGCAAGCTGGCATATCTTCCCGGTGATGAATCTAAC
ATCATGCAAAACGAGGTACATCATGTCGCTGCAGAGCTGTTCTGTACGTC
AGCGGAAACACGATCACAACGTAGATCCGTTGTTCCTTCTAACGCGACAT
TGATGGATGGTGCGTTTTTTTGTTTGTTTCTGTAACAACACCAAGGACAG
GCCGCCACCTCTGCTACGACACCAAGTTATTGCATTGGTGAACCCTTTGA
CCGCCGTCAGCATACTGTATTGTCGAAAACTAAAAGAAACGTACAGGATG
GCTTGGAGATAGGCGTTGTCGGATGCGACGCCATCGACCAAAGGAAGCAT
CATAGCAACCAGGCCTGCCGCTGCAACCCGCAGTCGTGCCCGAGGTTAAC
AAAGCAACCCTAACCCGACAAGGGACGGGGGTGATATAGCTCCCTTACCA
CCAACCGTTATTCCTGAACGTTCCATTAATGAGCATGACTTCCGTGAAAA
CGGCACGCTTTGTTTAACGATGCTTTTGGTCGATGTTACTACGTCCGCCA
TCTTCTGACGTCAAGTCGCTGTCCTCGTTCAGCTATTAATAGACTAGTTT
GCTTTGCCTGTTAACGGTCTTCACTATCAATAGCATTAGGAGTTTTCCAG
AAATTGCAAATCTAGCAGATGTGACCAACAGCCCTGTCACTGTCGTGGTG
TTTCCGCTGCGACGTATTAGTATTAATAGTATCCTCGGGGATCTACTGTC
GAAGCGAGATTTTTCTGGAGATAAAAACAGCTACAGTATTATTATAGTAT
TTCACTATAAAAACAGTATGCCATTGACCCATTGACCCATTGACCAATAT
CCGCTTTTTGGCGTTGGCTTTTGACAGTTGAGCGGCGGTGATGGTCTCTC
AATACACTTGACTGACCGACCGACCCCCTCGCCCGTGGCGGACCCCTCGC
GCGTGGGAAACATCGCCTTTGATGGACCCCTGAAAGCATGCAACGTGTTT
CCATCGCTCCCGTATGAAACAGAAAACATGCAATGTGTTTAAACTTTCTC
TCCTGTCTTCTAAAATTCGAAGAATGTACCAATAAATAACTCTCTGTGAA
ATTCTGCATTATTGTCGTGAGAAACGGACTCGTCGCCACCCGGCTGGGTG
TATGGACGGGGTTAGGGGTACGCTGGGTCTCTGAACCACGCTGGAGTTTC
CGTGTGATCCTGTTAGCCGTTAGTGCTACTGGTCCGTCCTGATTGTCAGG
CGGCGCACTATCTCAATCAGTACAGTACTAAAATACCGTCTACGGCCTCC
GATGCTTTCTGTTTTGCACATGACATGACATGCACACTTTACCACTATTA
ATAGATTAGTAACAGTAATAGTGGGTATTAAGTGGAAAAAGAGAGGCGCA
CAAAAATTGGTTCATGGTGATACCTGAAGTAGGTAGTCATTAACTTGAAC
TACGTTGAGGACTACTGGCTTTGTGCTGGCGGACTCTCGGCAGTAAACGC
CACCGGCACGGACCCGATAAACTCGTGACTAACCTGATGGCGGTGGTTCA
TGGTAAAGATGGACACCGTCGCGGAAAGCAGAAGGAATTCCTGAGTTTTC
CGTGAGTTAAGCATCAGATTCACTAGATTCAACCTGAGTGTGGAGAATAT
GCGGGCTGACGTGGGACGGGACGGCCGAACCTATCTCCCGAGACCAATTT
CTCAGGAGCGAATGGGGACAGGAAAAATCAGTATTTTCCCTGTTCAGCTG
ACCACGAGCAGGATTGGTAACCTTACCCGGTTGATCCATGCTCTGCTGTA
AGTGATGATCATACATATCTGTCTCTACTTTCCAGGTTCAAGTTACTGCC
TACTCTCAAGCTAATTTTTTGCGCCGTTTATGATTTTATTTTACCAGTAT
CCGATGCGGTAAACCCTCACTTTAAACTTATTTGTGGAGATCCAGATCTT
TTGTAAAAAAAACAAAAAACGAAAGTGACTCAACCTGGAACTTAACCCCA
AAGGCGTAAATACATGTCAACTTTGAGTCAAACTTCGAAACTAAATATTT
TTTCGTTTACCTACACATATATTCCCCATATCGAGATGTAGCCTCATGAC
CACCACAGGGAGCAGGGACTCCTCGTTTCAGTGGCAGCTGTGGACAACAA
TGGCATGAGACGATGTTGTTGATCTATGTTCTTGTTTTTATTGCACGTCA
TTTTGGCTCATTGCCGTTCGACCTTGAAGCGCAGGTAGACTCAAGTGTAC
AATCCGTTTAGGTTTTGTTCAGCAGACCACTGGCGGGATTGGCCACCGTG
TGAAGTAGTTTTTGGGGGTTGGCAACCAATGCGCTGAATGTGAGAAACAA
CAACAGCATAAAGCGATCACATGCGCCCGAGTACAACGAACTTTTTTTGC
AACTCTGCGGTGGCTCGTGCAACGCTAAACGTCTTGTATTAACGCGTGTG
AGGATTCCGCTGATATGGCAGGACTACGTGGACATGATGGAGGTCCTCGC
AATGGTTGCAGGCCTCATACCATTATCATCACCGTTGCTCCATCGTCAAT
ACCGGAGCCTGGCGACTGGTCTTCCGTACACCCTGCAAGCTGCGCCGCCG
ACGTCGGAAGTCCGACATGACACTACGGCTTCTCTTGGTGCAGATTCTAG
CAAGGATCCGCGGAGCTCGATAGACATCGATGATGTTCTCCGATCACCGA
AACAAAGGACAGCTTGCGTCGATTTGCTGCCGCGGGGTAGAAAAACACGA
GTTGTGGAAGGTTCTGACGCAATTTTGATGCGAGGCATGGACCATTTAGT
GGAATGGATGTGGAGCGGGCCGCTGCTTCCGTGCCACTACTTCATTCTAC
CGCATCTGACGAAGGATTCGCCCACATCCGATGGTGATGTAATTGACAAG
TTTCAAGATCATGGCGGAGGGCGTGACGGAATGAGGGTTGGGTTGAAAGG
CGCTCTCTCAGAGCTTCGCAGCGTGAACATAAAGTATGGCATTATATAAC
GGATAGTCTCAAGAGTGAGCAATGAGATAAATCAGTGATTTGAAATGAGT
TTTCAGTAAAAATACCTAAGATTGAGAGGCAAAACTTCTCCCCGGGGGAG
GAACAATCATAATTTTATTTCCAGCTGGATAGGTTGCGTCCAAGCTTGCA
TTCGATGTGACCAAGAAACATTTTGCGGACGACTCCATATAAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9121:5700..11742-

>mRNA_A-nodosum_M_contig9121.1.1 ID=mRNA_A-nodosum_M_contig9121.1.1|Name=mRNA_A-nodosum_M_contig9121.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=663bp|location=Sequence derived from alignment at A-nodosum_M_contig9121:5700..11742- (Ascophyllum nodosum dioecious)
ATGGAGCTCCAAGCACGGTGGGCGACTCGTATGTGGGGTGGCCTAGTGAA
TCCTCCTCCACCGACGGCGAGTGACGCTGCCCTGAGAGAGAGCCGGGGCG
TGAGGGCGAAACATCCCCGTCCTCAGTTCCCCACGGACTACGTGGACATG
ATGGAGGTCCTCGCAATGGTTGCAGGCCTCATACCATTATCATCACCGTT
GCTCCATCGTCAATACCGGAGCCTGGCGACTGGTCTTCCGTACACCCTGC
AAGCTGCGCCGCCGACGTCGGAAGTCCGACATGACACTACGGCTTCTCTT
GGTGCAGATTCTAGCAAGGATCCGCGGAGCTCGATAGACATCGATGATGT
TCTCCGATCACCGAAACAAAGGACAGCTTGCGTCGATTTGCTGCCGCGGG
GTAGAAAAACACGAGTTGTGGAAGGTTCTGACGCAATTTTGATGCGAGGC
ATGGACCATTTAGTGGAATGGATGTGGAGCGGGCCGCTGCTTCCGTGCCA
CTACTTCATTCTACCGCATCTGACGAAGGATTCGCCCACATCCGATGGTG
ATGTAATTGACAAGTTTCAAGATCATGGCGGAGGGCGTGACGGAATGAGG
GTTGGGTTGAAAGGCGCTCTCTCAGAGCTTCGCAGCGTGAACATAAAGTA
TGGCATTATATAA
back to top