mRNA_A-nodosum_M_contig912.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig912.18.1
Unique NamemRNA_A-nodosum_M_contig912.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.520e-45
Identity = 76/109 (69.72%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   10 DNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            DN PSH I  DPD+VAAGTADGW+IRLINQP N P TNILDLGFFN+IQSLQDRTT  TVDE I EV R F  Q  + L +VW + QA+L++I+LAKGDNT KLPHL K
Sbjct:    4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKK 112          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.450e-42
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            +Q DN PSH I  DPD+VAAG ADGW+IRLINQP NSPDTNILDLGFFN++QSLQDR T  TVDE I EV R F  Q  +   +VW + QA+L QI+LAKG+NTFKLPHL K
Sbjct:  153 IQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKK 263          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A4Q9LUD7_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LUD7_9MICR)

HSP 1 Score: 117 bits (294), Expect = 1.750e-31
Identity = 62/112 (55.36%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            VQQDNA  H   +D DIVA G+AD WNI+   QP NSPD N+LDLGFFNSIQSLQ   + +T+DELI  V   F   +   L  V+TT QA +E IMLA G N +K+PH+ K
Sbjct:   18 VQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDFNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACMESIMLADGGNGYKIPHISK 129          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: V9FUT4_PHYPR (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=V9FUT4_PHYPR)

HSP 1 Score: 117 bits (292), Expect = 4.920e-31
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHKQ 339
            +QQDNA  H + DD ++ AAG ADGW I+L+NQP  SPD N LDLGFF SIQSLQ +T   T DELI+E  + F A    +L + + T Q V+E I+  +G N ++L HLHK+
Sbjct:    1 IQQDNARPHVLADDLEVAAAGCADGWAIKLVNQPAQSPDLNCLDLGFFASIQSLQSKTIPRTPDELIKEALQSFQASTAVLLNKTFLTLQHVMEHILKNEGRNNYRLGHLHKE 113          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.080e-31
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            VQQDNA  H  VDDP+++AAG  +GWNI+L+ QP  SPD N+LDLGFFN+IQSLQ +TT  T+D+LI+ V   F      VL + + T Q V+E+ M + GDN +KLPHL K
Sbjct:  292 VQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPHLKK 403          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: W2PNG6_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PNG6_PHYPN)

HSP 1 Score: 118 bits (295), Expect = 2.400e-30
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHKQ 339
            +QQDNA  H + DD ++ AAG ADGW I+L+NQP  +PD N LDLGFF SIQSLQ +T   T DELI+EV + F A     L + + T Q V+EQI+  +G N ++L HLHK+
Sbjct:  144 IQQDNARPHVLADDLEVAAAGCADGWAIKLVNQPAQNPDLNCLDLGFFASIQSLQSKTIPRTPDELIKEVLQSFQASTAVSLNKTFLTLQHVMEQILKNEGRNNYRLGHLHKE 256          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A6A4APV1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4APV1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.800e-29
Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            ++QDNA  H + +D +++AAG ADGWNIRL NQP  SPD N LDLG+F SIQSLQ  T+  T ++LI+EV   FA      L + + T Q V+++IM  +G N ++LP +HK
Sbjct:   33 IEQDNARPHVLEEDAEVLAAGRADGWNIRLKNQPSQSPDLNCLDLGYFCSIQSLQSHTSPRTTEDLIKEVELTFAETTAETLNKTFLTLQLVMKEIMTNEGRNNYRLPRIHK 144          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A484KKG0_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KKG0_9ASTE)

HSP 1 Score: 114 bits (286), Expect = 4.920e-29
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            +QQDNA  H  V+DP+ V    ADG++I L  QPPNSPD NILDLGFF SIQSLQ +T+   VDEL++ V + +A  +   L  VW +YQ  + +IM  +G N +KL H+ K
Sbjct:  115 IQQDNAKPHIDVNDPEFVQVANADGYSIELTCQPPNSPDLNILDLGFFASIQSLQHQTSTRNVDELVQHVAQAYANLEAKKLNYVWISYQLAMTEIMKVQGGNNYKLAHIGK 226          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A6A5ABP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABP8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.750e-29
Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            +QQDNA  H  VDD ++  AGT  GW ++L+ QP  SPD N+LDLGFFNSIQ+LQ R  +  +D+L+  V   F   D   L + + T Q V+E+ +   GDNT+KLPHLHK
Sbjct:  112 IQQDNARPHVQVDDLEVATAGTIGGWRVQLVAQPAMSPDFNVLDLGFFNSIQALQHRQVVTCIDDLVAAVHAAFDELDFRTLDKTFMTLQKVMEESLKVGGDNTYKLPHLHK 223          
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Match: A0A6A4Z4C8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z4C8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 8.850e-29
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNSIQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAKGDNTFKLPHLHK 336
            +QQDNA  H  VDDP ++ AG  +GW+IRL  QP  SPD N+L LGFFN+IQ LQ +T+  T+D+LI+ V   F      VL + + T Q V+E+ M  +GDN +KLPHL K
Sbjct:   67 IQQDNAKPHVGVDDPQVMEAGRTNGWSIRLTAQPAQSPDFNVLALGFFNAIQGLQHQTSARTIDDLIKSVQDAFTDLPWRVLDKTFMTLQKVMEESMNVQGDNVYKLPHLRK 178          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig912.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9R2_9PHAE5.520e-4569.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGY9_9PHAE1.450e-4267.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Q9LUD7_9MICR1.750e-3155.36Uncharacterized protein (Fragment) n=2 Tax=Hamilto... [more]
V9FUT4_PHYPR4.920e-3151.33Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A6A5AA16_9STRA9.080e-3154.46Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W2PNG6_PHYPN2.400e-3052.21Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6A4APV1_9STRA2.800e-2949.11Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A484KKG0_9ASTE4.920e-2950.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A6A5ABP8_9STRA5.750e-2949.11Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4Z4C8_9STRA8.850e-2950.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig912contigA-nodosum_M_contig912:300907..301245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008881499.1
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.16e-30
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870367.3715518-CDS-A-nodosum_M_contig912:300906..3012451680870367.3715518-CDS-A-nodosum_M_contig912:300906..301245Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig912 300907..301245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig912.18.1prot_A-nodosum_M_contig912.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig912 300907..301245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig912.18.1

>prot_A-nodosum_M_contig912.18.1 ID=prot_A-nodosum_M_contig912.18.1|Name=mRNA_A-nodosum_M_contig912.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
VQQDNAPSHNIVDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLGFFNS
IQSLQDRTTLNTVDELIEEVGRVFAAQDVAVLGRVWTTYQAVLEQIMLAK
GDNTFKLPHLHKQ
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mRNA from alignment at A-nodosum_M_contig912:300907..301245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig912.18.1 ID=mRNA_A-nodosum_M_contig912.18.1|Name=mRNA_A-nodosum_M_contig912.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig912:300907..301245+ (Ascophyllum nodosum dioecious)
GTCCAGCAGGACAATGCTCCGTCACACAACATCGTCGACGACCCGGACAT TGTGGCGGCGGGTACTGCTGACGGGTGGAACATTCGGCTCATCAACCAGC CGCCCAACAGCCCCGACACGAACATCCTGGACTTGGGGTTTTTCAACTCC ATCCAGTCCCTCCAGGATCGGACGACGCTGAACACGGTGGACGAGCTCAT CGAGGAGGTGGGCAGGGTGTTCGCCGCGCAGGACGTGGCGGTCCTTGGCA GGGTCTGGACGACCTACCAGGCCGTCCTCGAGCAGATCATGCTCGCGAAG GGCGACAACACCTTCAAGCTGCCCCACCTTCACAAACAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig912:300907..301245+

>mRNA_A-nodosum_M_contig912.18.1 ID=mRNA_A-nodosum_M_contig912.18.1|Name=mRNA_A-nodosum_M_contig912.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig912:300907..301245+ (Ascophyllum nodosum dioecious)
GTCCAGCAGGACAATGCTCCGTCACACAACATCGTCGACGACCCGGACAT
TGTGGCGGCGGGTACTGCTGACGGGTGGAACATTCGGCTCATCAACCAGC
CGCCCAACAGCCCCGACACGAACATCCTGGACTTGGGGTTTTTCAACTCC
ATCCAGTCCCTCCAGGATCGGACGACGCTGAACACGGTGGACGAGCTCAT
CGAGGAGGTGGGCAGGGTGTTCGCCGCGCAGGACGTGGCGGTCCTTGGCA
GGGTCTGGACGACCTACCAGGCCGTCCTCGAGCAGATCATGCTCGCGAAG
GGCGACAACACCTTCAAGCTGCCCCACCTTCACAAACAG
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