mRNA_A-nodosum_M_contig911.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig911.1.1
Unique NamemRNA_A-nodosum_M_contig911.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig911contigA-nodosum_M_contig911:24747..25581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size401
Hectar predicted targeting categorymitochondrion
Exons2
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870366.265641-CDS-A-nodosum_M_contig911:24746..249661680870366.265641-CDS-A-nodosum_M_contig911:24746..24966Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig911 24747..24966 +
1680870366.275944-CDS-A-nodosum_M_contig911:25402..255811680870366.275944-CDS-A-nodosum_M_contig911:25402..25581Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig911 25403..25581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig911.1.1prot_A-nodosum_M_contig911.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig911 24747..25581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig911.1.1

>prot_A-nodosum_M_contig911.1.1 ID=prot_A-nodosum_M_contig911.1.1|Name=mRNA_A-nodosum_M_contig911.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
PLRWRRLPLPPQRPSSPLRWRQLRLHLPNLQMMMATPCGLMPYGRSLSLS
LEQESPPLLRQQVPFFARGAHRPESSDMIPAKKNIKSRSLAKVIVGYLPP
FLHYRKEVSEGQKEHYSVIDFCSKMIDNGLDS*
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mRNA from alignment at A-nodosum_M_contig911:24747..25581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig911.1.1 ID=mRNA_A-nodosum_M_contig911.1.1|Name=mRNA_A-nodosum_M_contig911.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at A-nodosum_M_contig911:24747..25581+ (Ascophyllum nodosum dioecious)
CCGCTTCGGTGGCGCCGTCTACCATTGCCCCCACAACGGCCCTCATCGCC
GCTTCGGTGGCGCCAGCTCAGGCTGCACCTGCCCAACCTTCAAATGATGA
TGGCGACTCCGTGTGGCTTAATGCCGTATGGGAGGTCGCTGTCACTGTCA
TTGGAGCAGGAGTCACCGCCGCTGCTACGGCAGCAGGTTCCATTTTTTGC
GCGCGGCGCGCATCGACCAGGTGAGAATTGGTGACGTTTGCCTCAGGTCT
TGATCATTTACGCGAAAGGAACACCACTGCATGGCCGTACCACTCGCGCA
TTAGGCGTGCGCTGTAGCAGTAGTCACATTTGCCTAAGCCAACAACGCAG
AACGCAGAATATTTTGCTGGAATAGCTGAAAAAGTTGGAGAGGCTGCGCC
CAAGTTTAATCTTCAAGCTCTACTACTCGTAAAGCGAACGTTTCCGCATT
TATTTCGAATTAAATTTCCCGGGTAACTGCATCACTATAATATCTCGGAA
CTTATCGTCCGTCTGATAACTGATCTTGACGTGGAATATGTGTTCGGTTG
TTCGGATGGCCTGCTAGAGACACGAGCAACGTACGAAGATGACATGATGT
GTCTCTGTTCTTGTGTGAAATCCGTGACGTCCATCCTGCTCTAACGATTT
GCGCAGAATCCAGCGACATGATCCCCGCGAAGAAGAATATAAAATCTAGG
AGTTTGGCAAAAGTAATCGTGGGATATTTGCCTCCGTTTCTACATTACCG
CAAGGAAGTTAGCGAGGGTCAGAAAGAACACTACTCGGTGATAGATTTCT
GCTCAAAAATGATCGACAACGGTCTAGATTCGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig911:24747..25581+

>mRNA_A-nodosum_M_contig911.1.1 ID=mRNA_A-nodosum_M_contig911.1.1|Name=mRNA_A-nodosum_M_contig911.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig911:24747..25581+ (Ascophyllum nodosum dioecious)
CCGCTTCGGTGGCGCCGTCTACCATTGCCCCCACAACGGCCCTCATCGCC
GCTTCGGTGGCGCCAGCTCAGGCTGCACCTGCCCAACCTTCAAATGATGA
TGGCGACTCCGTGTGGCTTAATGCCGTATGGGAGGTCGCTGTCACTGTCA
TTGGAGCAGGAGTCACCGCCGCTGCTACGGCAGCAGGTTCCATTTTTTGC
GCGCGGCGCGCATCGACCAGAATCCAGCGACATGATCCCCGCGAAGAAGA
ATATAAAATCTAGGAGTTTGGCAAAAGTAATCGTGGGATATTTGCCTCCG
TTTCTACATTACCGCAAGGAAGTTAGCGAGGGTCAGAAAGAACACTACTC
GGTGATAGATTTCTGCTCAAAAATGATCGACAACGGTCTAGATTCGTGA
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