mRNA_A-nodosum_M_contig91.73.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig91.73.1
Unique NamemRNA_A-nodosum_M_contig91.73.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438BR63_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BR63_VITVI)

HSP 1 Score: 57.8 bits (138), Expect = 7.120e-8
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDM 252
            L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +GV TLS+ D P+ PEE+E M
Sbjct:    8 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERM 85
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 57.8 bits (138), Expect = 8.320e-8
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDM 252
            L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +GV TLS+ D P+ PEE+E M
Sbjct:  527 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERM 604
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 57.8 bits (138), Expect = 8.430e-8
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDM 252
            L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +GV TLS+ D P+ PEE+E M
Sbjct:  921 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERM 998
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438KDB5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KDB5_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 1.660e-7
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K +K P   G    SKA  PQN +E+E+MK
Sbjct:    2 LSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSSKAPIVKG-DKFSKAQCPQNDDEREEMK 80
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438FZX1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FZX1_VITVI)

HSP 1 Score: 56.6 bits (135), Expect = 1.850e-7
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +EKE+MK
Sbjct:  100 LSTHFDMKDLGEASYVLGIKILRDRVNGVLKLSQRAYIEKILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEKEEMK 178
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438EP48_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EP48_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 2.730e-7
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+E+MK
Sbjct:    2 LSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMK 80
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A5BTR3_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BTR3_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 3.990e-7
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+E+MK
Sbjct:   98 LSTHFDMKDLGEASYVLGIKILRDRVNGXLKLSQRAYIEKILKRFNMHNCKSTKTPIVKG-DKFSKAQCPQNDDEREEMK 176
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438GLX2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GLX2_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 4.000e-7
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 MNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            M +  A +   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+E+MK
Sbjct:  813 MEQPTAHVVTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNFKSTKAPIVKG-DKFSKAQCPQNDDEREEMK 898
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A0A438CFA8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CFA8_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 4.030e-7
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+E+MK
Sbjct: 1006 LSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMK 1084
[Close]
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Match: A5BJG5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Vitis vinifera TaxID=29760 RepID=A5BJG5_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 5.030e-7
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   22 LGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEDMK 255
            L   F +KD G+A Y +G  I R+R    LK  Q +Y+E ++KRFN+   K  K P   G    SKA  PQN +E+E+MK
Sbjct:   52 LSTHFDMKDFGEASYVLGIKILRDRANGVLKLSQRVYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMK 130
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig91.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438BR63_VITVI7.120e-840.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438K5H3_VITVI8.320e-840.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JH99_VITVI8.430e-840.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KDB5_VITVI1.660e-742.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FZX1_VITVI1.850e-743.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EP48_VITVI2.730e-742.50Retrovirus-related Pol polyprotein from transposon... [more]
A5BTR3_VITVI3.990e-742.50Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438GLX2_VITVI4.000e-740.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CFA8_VITVI4.030e-742.50Retrovirus-related Pol polyprotein from transposon... [more]
A5BJG5_VITVI5.030e-742.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig91contigA-nodosum_M_contig91:962506..962760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4081.Solyc11g051150.1.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size256
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.17e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size255
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870363.065953-CDS-A-nodosum_M_contig91:962505..9627601680870363.065953-CDS-A-nodosum_M_contig91:962505..962760Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 962506..962760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig91.73.1prot_A-nodosum_M_contig91.73.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig91 962506..962760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig91.73.1

>prot_A-nodosum_M_contig91.73.1 ID=prot_A-nodosum_M_contig91.73.1|Name=mRNA_A-nodosum_M_contig91.73.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVK
RFNVKKEAKIPAASGVQTLSKADEPQNPEEKEDMK
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mRNA from alignment at A-nodosum_M_contig91:962506..962760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig91.73.1 ID=mRNA_A-nodosum_M_contig91.73.1|Name=mRNA_A-nodosum_M_contig91.73.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig91:962506..962760- (Ascophyllum nodosum dioecious)
ATGAACAGATTCGCGGCCGAGCTTGGGCGGAAGTTTAAGTTGAAGGACAT
GGGGGACGCCGAGTACTACATGGGTTGTCACATTACCAGGAACCGCAAGG
CGCGTGAATTAAAGTTCGACCAACACCTATATGTGGAGTCAATGGTAAAG
AGATTCAATGTCAAGAAGGAAGCCAAAATACCGGCTGCGTCGGGGGTGCA
GACGCTCTCAAAGGCGGATGAGCCGCAAAATCCAGAGGAGAAGGAAGATA
TGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig91:962506..962760-

>mRNA_A-nodosum_M_contig91.73.1 ID=mRNA_A-nodosum_M_contig91.73.1|Name=mRNA_A-nodosum_M_contig91.73.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig91:962506..962760- (Ascophyllum nodosum dioecious)
ATGAACAGATTCGCGGCCGAGCTTGGGCGGAAGTTTAAGTTGAAGGACAT
GGGGGACGCCGAGTACTACATGGGTTGTCACATTACCAGGAACCGCAAGG
CGCGTGAATTAAAGTTCGACCAACACCTATATGTGGAGTCAATGGTAAAG
AGATTCAATGTCAAGAAGGAAGCCAAAATACCGGCTGCGTCGGGGGTGCA
GACGCTCTCAAAGGCGGATGAGCCGCAAAATCCAGAGGAGAAGGAAGATA
TGAAG
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