mRNA_A-nodosum_M_contig9090.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9090.2.1
Unique NamemRNA_A-nodosum_M_contig9090.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 564 bits (1453), Expect = 4.040e-187
Identity = 284/502 (56.57%), Postives = 362/502 (72.11%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEE--PTPMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVP-VRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMN 1497
            L+++P+  W + S +AGW  +    G+QPV+H  S +LLT  N ISAAW  HY RLAAD TGNS+  D+W  W   PQR+H+  LD  I   EM+EAL RI+R+K+PG DG+PAD L+LA  EE   +PMG  +L +LN +WK+  IP+  R STVV +PKKGD+TDM N+RGISLM T LKVL++++STRLN AFE+  +FS++Q GFR +EECVTQ+ACLLEI +RR     + Y++FVDLKKAYDTVPQEAL AKL FYGVRG  L FIRALY+ S+I VR G  +S+   L RGVRQGCPLSPVLFNIFIND++DGAE  GVP V  Q     RIP LLFADDLV +S +R  +  M   ++ W AENEMS GI KCG+M +      L + P RW++AG+ +PIV  YTYLGL F   LDV  M+ +++A G++LV  +TP+L  R IPVP+KVAVVRGV++PRLLFGAEV+GM   IT  +QV +N+ +RMV GM+
Sbjct:  412 LRSDPKAAWHFMSAVAGWKRKDSSGGLQPVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMS 913          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 364 bits (934), Expect = 1.180e-111
Identity = 202/510 (39.61%), Postives = 294/510 (57.65%), Query Frame = 1
Query:   16 RNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSP----DRWTRW-GQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEPTPMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVG---GTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPV-----RMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSM--LHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNK--GITEPMQVLLNQVWRMVGGM 1494
            R FWKWA +IA   P       QPV    SG L TE   I+A W+ HY  L  DP   +       + W R  G  P    L+ ++  I   E+ +AL R+  NKA G DGI A+ LKLA+    +P G +LL ++N++W +  +P  W +S VVS+ KKGD+T M NYRGIS+M   +K+LM V++ RL    +   +  + Q GF   EEC  Q A + +I  RR  +GL TY  F+DL+KAYDT+P E L +KL+  G+ G  L F++ALY  S +QV+ G   G +S+P  + RG+RQGCP SP+LFNIFIND+ DG E  G  V      +      R+P  LFADD V L+ S   +  M    ++W  ++ M  G++KCG+M + +   +  L +   RWQ+ G+ VP+VSEY YLG    +DL + +++ DRV K +R V+ L   L  R IP+ ++ +V++  ++P L +G EV+GM+   G+   +Q +LNQ  R + G+
Sbjct:  309 RGFWKWARSIAKGHPTQSNRAEQPVHDPTSGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAIYAPDSPFGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALGRHSDVVALREQADRWQLGGERVPVVSEYRYLGALINSDLSMRNIVGDRVNKSRRAVEALDSVLGGRDIPINVRTSVLKTCILPVLTYGCEVWGMDSTSGVNR-LQTILNQCLRRLVGV 817          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 329 bits (844), Expect = 2.590e-96
Identity = 189/503 (37.57%), Postives = 282/503 (56.06%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAV-AEEPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            L  +PR  W W    +G      + G    K+     L+T     S AW+ H+  LA D TGNS+S ++W+  G   +  + E  D  + +TE+  AL     NK+PG DGIP+++ KL    EEPT P       ++N +W+   IP     S +V +PKKGD+ D  NYRGISL+ T  KVL  +++ RL+    K  I  K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP +AL+ K+   G+ G+    I ALY   ++ VRVG  +S+  +   GVRQGCP SP+LF+IFIND++DG +   VP     G+ T IP LLFADD V L+ S   ++    ++T W+ + EM +  +KCGIM +N    ML      + I G+ +  V+EY YLG+ F    +  S L +    G++   ++  FL  R IP  M++A+VR V++P L +G E++GM+      +Q + +   R+V G+ R+
Sbjct:  995 LTNKPRELWSWLKRYSGRFLSSLIDGPIFDKNR---KLVTGHEEKSEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAVYTE-CDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLDGIKGVKVP-----GIDTEIPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINSSTGML------FTIMGKPIKQVAEYKYLGVVFNDKWNNLSALKNNRDNGRKAFHSMYYFLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRS 1482          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1YD24_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YD24_9FUNG)

HSP 1 Score: 314 bits (805), Expect = 2.780e-95
Identity = 178/503 (35.39%), Postives = 275/503 (54.67%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            L  + R  W W    +G   R + S +    +     L+T+ NA +  W+ H+  LA D TGNS+S D+W   G  P        D  + + E+ +AL     NK+PG DGIP+++ KL   E EPT P       ++N +W S  +P     S VV +PKKGD+ D  NYRGISL+ T  KV+  +++ RL     K  I +K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP +AL+ K+   G+  +    I ALY   ++ VRVG  +S+  +   GVRQGCP SP+LF+I+IND++ G +   +P     G +  I  LLFADD V L+ S   ++    +++ W+ + EM +  +KCGIM +N    ML      + + G+ +  V+ Y YLG+ F    +  S L +    G++   ++  FL  + IP  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R+
Sbjct:  222 LGNKSRELWSWLKRFSG---RFRSSLIDGPIYNNDNKLITDTNAKAEVWATHFEELAKDSTGNSRSADKWENIGTIPAV--FPECDAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEKEPTSPFAKVTSRIINGIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGDKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLKGVEIP-----GTEATISGLLFADDAVVLAESPSELQIALEKISAWSQKWEMQINQEKCGIMGINSCTGML------FTVMGKPIEQVTNYKYLGVVFNDKWNHLSALQNNRENGRKAFHSMYYFLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAVRLVAGVGRS 708          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 318 bits (815), Expect = 2.360e-94
Identity = 185/503 (36.78%), Postives = 280/503 (55.67%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            L  + R  W W    +G      V G  P+ +  S  L+T+    +  W+ H+  LA D TGNS+S ++W   G        E  D  + +TE+  AL     NK+PG DGIP++  KL   E EPT P    LL ++N +W +  IP     S VV +PKKGD+ +  NYRGISL+ T  KV+  ++S RL     K  I +K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP +AL+ K+   G+RG+    I ALY   ++ VRVG  +S+  +   GVRQGCP SP+LF+IFIND++ G +   +P     G+ T I  LLFADD V L+ S   ++    +++ W+ + EM +  +KCGIM +N    ML      + + G+ +  V+EY YLG+ F    +  S L      G++   ++  FL  + IP  M+VA++R V+IP L +G E++GM+   +  +Q + +   R+V G+ ++
Sbjct:  371 LGNKSRELWSWLKRFSGRFRSSLVDG--PIFNK-SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDIGSDSTEVFTE-CDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLGGIKGVKIP-----GIDTEIAGLLFADDAVVLADSPAELQIALEKLSAWSHKWEMKINQEKCGIMGINSSTGML------FTVMGKHIEQVTEYKYLGVVFNNKWNNLSALKSNRKNGRKAFHSMYYFLSRKDIPTAMRVALIRTVLIPILCYGGEIFGMSATRSGTLQKVADDATRLVAGVGKS 858          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 316 bits (810), Expect = 1.110e-93
Identity = 181/498 (36.35%), Postives = 275/498 (55.22%), Query Frame = 1
Query:   16 RNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            R  W W    +G      V G    K+     L+T+  A +  W+ H+  LA D TGNS+S  +W   G+    +  E  D  + + E+  AL     NK+PG DGIP+++ K+   E EPT P+   +L ++  +W +  IP     S V+ +PKKGD+ D  NYRGISL+ T  KVL  +++ RL     K  I +K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP EAL+ K+   G+ G+    I ALY   ++ VRVG  +S+  D   GVRQGCP SP+LF+I+IND++DG +   +P     G++  IP LLFADD V L+ S   ++    ++T W+ + EM +   KCGIM +N    ML      + I G+ +  V EY YLG+ F    +  S L +     ++   ++  FL  + +P  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R+
Sbjct:  314 RELWSWLKRFSGRFSSSLVDGPIFDKNR---QLITDSEAKAEVWASHFEELAKDSTGNSRSAKKWRDIGKNYTAEFTE-CDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFDIYINDLLDGIKGVKIP-----GIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINSSTGML------FTIMGKPITQVKEYKYLGVVFNNKWNNLSALQNNKENERKAFQSMYYFLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRS 796          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 320 bits (821), Expect = 1.300e-93
Identity = 196/514 (38.13%), Postives = 280/514 (54.47%), Query Frame = 1
Query:   37 SNIAGWSPRCKVSGV----QPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQC-PQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEE---------------PTPMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPK-KGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKE--GIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSE---PADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGV--KTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPA-RWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLL-NQVWRMVG 1488
            S+ AG+S  C  S +    QP+KH  S  +LT+   I+ AW+ ++G LA D TG+      W R G   P    LE L+  + + E+  AL  ++  KAPG DG+ AD LKL   +                P PM   L  +L  MW   T+PS W  + VV + K +GD  +M NYRGISL+   LK+L  +++ RL    + +      K Q GFR +EEC+     L E+ +RR +M L +Y+ F+DLKKAYDTVP  AL  KL+  GVRG+ L FI+ LY  S +  R          PA L RG+RQGCP+SP+LFN+FIND++D     GV V    G+   T +  LLFADDLV LS     +++    +T W  + EM  G+ KC IM ++ P+S L      +W + GQ VP+V EY YLG      LD+   +  RV + K+ + +++PFL  R IP+ ++  V   +V P  L+GAE++G+ +  T P+  L  N + R+ G
Sbjct:  598 SHQAGFSS-CSSSVIDISRQPIKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNPMAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLFNVFINDIIDEIRELGVHVP---GLPRSTTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG 1107          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 319 bits (817), Expect = 1.680e-93
Identity = 180/503 (35.79%), Postives = 280/503 (55.67%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            L  + R+ W W    +G   R + S +    +     L+T+ +A +  W+ H+ +LA D TGNS+S D+W   G           D  + + E+ +AL     NK+PG DGIP+++ KL   E EPT P+   +  ++N +W S  +P     S VV +PKKGD+ D  NYRGISL+ T  KV+  +++ RL     K  I +K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP +AL+ K+   G+  +    I ALY   ++ VRVGG +S+  +   GVRQGCP SP+LF+I+IND++ G +   +P     G +  I  LLFADD V L+ S   ++    +++ W+ + EM +  +KCGIM +N    ML      + I G+ V  VS Y YLG+ F    +  S L +    G++ + ++  FL  + IP  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R+
Sbjct:  548 LGNKSRDLWSWLKRFSG---RFRSSLIDGPVYNNDHKLITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTI--AAVFPECDAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGGKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLKGVEIP-----GTEAMISGLLFADDAVVLAESPAELQIALEKISAWSQKWEMQINQEKCGIMGINSSTRML------FTIMGKPVEQVSNYKYLGVVFNDKWNHLSALQNNRENGRKALHSMYFFLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRS 1034          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG)

HSP 1 Score: 311 bits (797), Expect = 1.350e-91
Identity = 180/503 (35.79%), Postives = 275/503 (54.67%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            L  + R  W W    +G   R + S V+      +  L+TE    +  W+ H+  LA D TGNS+S ++W   G        E  D  + + E+  AL      K+PG DGIP++  K    E EPT P    L  ++  +W + +IP     S VV +PKKGD+ +  NYRGISL+ T  KV+  ++  RL     K  I +K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP EAL+ K+   G+ G+    I ALY   ++ VR+GG +S+  +   GVRQGCP SP+LF+I+IND++DG +   +P     G+   IP LLFADD V L+ S   ++    ++T W+ + EM +  +KCG+M +N    ML      + I G+ +  VS+Y YLG+ F    +  S L +    G++   ++  FL  + IP  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R+
Sbjct:  349 LGNKSRELWSWLKRFSG---RFRSSLVEGPIFDKNKKLVTESEKKAEVWAAHFEELAKDSTGNSRSAEKWHGMGNDSAGVFTE-CDTPLSWDEICAALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPFAKVLFRLIKEIWDTESIPEQLDASVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIVRRLGKIDNKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRAGGIGGKVHRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFDIYINDLLDGIKGVKIP-----GIDKGIPGLLFADDAVVLAESPAELQIALEKLTAWSLKWEMQINQEKCGVMGINSSTGML------FTIMGKTIAQVSDYKYLGVVFNDKWNHLSALQNNRENGRKAFHSMYYFLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRS 836          
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Match: A0A1R1YJD8_9FUNG (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YJD8_9FUNG)

HSP 1 Score: 312 bits (799), Expect = 2.660e-91
Identity = 180/503 (35.79%), Postives = 278/503 (55.27%), Query Frame = 1
Query:    1 LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWSDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNHMWKSSTIPSAWRNSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIFSKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNRN 1503
            L    R  W W    +G      V G    K+     L+T+    +  W+ H+  LA D TGNS+S ++W   G        E  D  + + E+ +AL      K+PG DGIP++  K    E EPT P+   L  ++  +W + +IP     S VV +PKKGD+ +  NYRGISL+ T  KV+  +++ RL     K  I +K Q GFR +EECV Q+  L E+ +RR + GL+T++ F+D  KAYD VP EAL+ K+   G+ G+    I ALY   ++ VR+GG +S+  +   GVRQGCP SP+LF+I+IND++DG +   VP     GV+  IP LLFADD V L+ S   ++    +++ W+ + EM +  +KCG+M +N    ML      + + G+ +  V+EY YLG+ F    +  S L +    G++   ++  FL  + IP  M+V+++R V+IP L +G E++GM+   +  +Q + N   R+V G+ R+
Sbjct:  683 LCNRSREVWSWLKRFSGRFRSSLVDGPIFDKNR---QLITDSETKAEVWAAHFEELAKDSTGNSRSAEKWHGMGNDSAGVFTE-CDTPLFWAEICDALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPLAKVLFRLIKEIWDNESIPEQLDPSVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIARRLCKIENKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRACGIGGKVYRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFDIYINDLLDGIKGVKVP-----GVEEVIPGLLFADDAVVLAESPAELQIALEKLSAWSNKWEMQINQEKCGVMGINGNTGML------FTVMGKPINQVTEYKYLGVLFNDKWNNLSALKNNRENGRKAFHSMYYFLTKKDIPTAMRVSLIRTVLIPILCYGGEIFGMSTTRSGTLQKVANDAARLVAGVGRS 1170          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9090.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE4.040e-18756.57Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO1.180e-11139.61Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1R1YP44_9FUNG2.590e-9637.57LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1YD24_9FUNG2.780e-9535.39RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YAQ4_9FUNG2.360e-9436.78RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1Y7R2_9FUNG1.110e-9336.35Putative RNA-directed DNA polymerase from transpos... [more]
A0A3M2C3P5_9GAMM1.300e-9338.13Reverse transcriptase domain-containing protein n=... [more]
A0A1R1X7T5_9FUNG1.680e-9335.79RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1X4V9_9FUNG1.350e-9135.79Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1YJD8_9FUNG2.660e-9135.79LINE-1 retrotransposable element ORF2 protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9090contigA-nodosum_M_contig9090:7180..8682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45157.CMT010CT
PFAMsDUF4283,Exo_endo_phos_2,RVT_1
Model size1503
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.08e-69
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1503
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870357.725879-CDS-A-nodosum_M_contig9090:7179..86821680870357.725879-CDS-A-nodosum_M_contig9090:7179..8682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9090 7180..8682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9090.2.1prot_A-nodosum_M_contig9090.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9090 7180..8682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9090.2.1

>prot_A-nodosum_M_contig9090.2.1 ID=prot_A-nodosum_M_contig9090.2.1|Name=mRNA_A-nodosum_M_contig9090.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=501bp
LQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVNAISAAWS
DHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNR
IRRNKAPGQDGIPADLLKLAVAEEPTPMGNALLAVLNHMWKSSTIPSAWR
NSTVVSMPKKGDLTDMGNYRGISLMATALKVLMVVLSTRLNGAFEKEGIF
SKAQVGFRRKEECVTQSACLLEITKRRNLMGLTTYMLFVDLKKAYDTVPQ
EALMAKLDFYGVRGRALGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQG
CPLSPVLFNIFINDVMDGAERSGVPVRMQGGVKTRIPALLFADDLVALSR
SRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIA
GQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVI
PVPMKVAVVRGVVIPRLLFGAEVYGMNKGITEPMQVLLNQVWRMVGGMNR
N
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mRNA from alignment at A-nodosum_M_contig9090:7180..8682+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9090.2.1 ID=mRNA_A-nodosum_M_contig9090.2.1|Name=mRNA_A-nodosum_M_contig9090.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1503bp|location=Sequence derived from alignment at A-nodosum_M_contig9090:7180..8682+ (Ascophyllum nodosum dioecious)
CTGCAGACTGAACCACGCAACTTTTGGAAATGGGCGTCTAACATCGCAGG CTGGTCCCCGCGTTGTAAAGTTTCGGGGGTGCAACCCGTGAAACACGCGG GATCCGGATCCCTTCTAACAGAAGTAAATGCCATCTCGGCAGCGTGGAGC GATCACTATGGGCGACTTGCGGCTGACCCTACGGGGAACAGCCAATCACC GGACCGGTGGACGCGGTGGGGACAATGCCCTCAGAGAAAGCACCTCGAGT ACTTAGACGAGGACATCCCGTACACGGAGATGTTGGAGGCCCTAAATCGG ATTCGAAGAAACAAGGCACCAGGACAGGATGGGATTCCCGCTGACTTACT TAAGTTGGCGGTGGCTGAGGAACCGACCCCTATGGGGAACGCGCTCTTAG CCGTGCTGAACCACATGTGGAAGTCGAGCACCATACCTTCGGCTTGGCGC AACTCAACAGTAGTTTCGATGCCCAAAAAGGGGGACCTTACGGATATGGG AAACTACCGAGGAATATCCCTGATGGCCACAGCACTTAAGGTGCTAATGG TCGTCCTCAGCACCCGGCTTAACGGGGCGTTTGAGAAAGAGGGAATATTC AGCAAAGCTCAAGTAGGCTTCCGGAGGAAGGAAGAATGTGTCACCCAAAG TGCCTGCCTTTTAGAGATCACAAAGCGACGTAACCTCATGGGTTTAACCA CGTATATGTTGTTCGTGGACCTCAAGAAGGCATATGACACGGTGCCGCAG GAAGCCCTTATGGCGAAACTCGACTTTTATGGCGTGAGGGGACGCGCACT CGGGTTTATTCGAGCTCTTTACTCCCAAAGCCGTATCCAGGTACGGGTGG GGGGAACCGTGTCGGAACCAGCCGACCTCCTTCGGGGGGTTCGACAAGGG TGCCCCCTGTCGCCTGTTCTGTTCAACATATTCATTAATGATGTGATGGA TGGGGCGGAACGATCGGGGGTCCCAGTGCGCATGCAAGGGGGGGTAAAAA CACGCATTCCAGCATTACTGTTTGCGGATGACCTGGTTGCCCTTTCGAGA TCTCGTAAGGGTATTGAGAGGATGACCAGACAGGTTACAGAATGGACGGC TGAGAATGAGATGAGTGTAGGGATACAAAAATGCGGAATAATGGTTGTGA ACAAGCCGCTCAGCATGCTTCACCAAACCCCGGCCCGATGGCAAATAGCG GGGCAACTTGTACCGATCGTCAGCGAGTATACGTACTTGGGGTTACGCTT TACGGCAGACCTTGATGTGCCTTCAATGCTGAGTGATAGGGTTGCCAAAG GGAAGAGGTTGGTGGACACGCTAACACCGTTCTTGCGTACACGGGTGATT CCGGTACCAATGAAGGTGGCGGTGGTTAGAGGAGTGGTCATTCCGCGGCT GTTGTTTGGAGCTGAAGTCTATGGCATGAATAAGGGCATCACTGAGCCCA TGCAGGTCCTGCTAAACCAAGTTTGGCGGATGGTCGGGGGGATGAATCGC AAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9090:7180..8682+

>mRNA_A-nodosum_M_contig9090.2.1 ID=mRNA_A-nodosum_M_contig9090.2.1|Name=mRNA_A-nodosum_M_contig9090.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1503bp|location=Sequence derived from alignment at A-nodosum_M_contig9090:7180..8682+ (Ascophyllum nodosum dioecious)
CTGCAGACTGAACCACGCAACTTTTGGAAATGGGCGTCTAACATCGCAGG
CTGGTCCCCGCGTTGTAAAGTTTCGGGGGTGCAACCCGTGAAACACGCGG
GATCCGGATCCCTTCTAACAGAAGTAAATGCCATCTCGGCAGCGTGGAGC
GATCACTATGGGCGACTTGCGGCTGACCCTACGGGGAACAGCCAATCACC
GGACCGGTGGACGCGGTGGGGACAATGCCCTCAGAGAAAGCACCTCGAGT
ACTTAGACGAGGACATCCCGTACACGGAGATGTTGGAGGCCCTAAATCGG
ATTCGAAGAAACAAGGCACCAGGACAGGATGGGATTCCCGCTGACTTACT
TAAGTTGGCGGTGGCTGAGGAACCGACCCCTATGGGGAACGCGCTCTTAG
CCGTGCTGAACCACATGTGGAAGTCGAGCACCATACCTTCGGCTTGGCGC
AACTCAACAGTAGTTTCGATGCCCAAAAAGGGGGACCTTACGGATATGGG
AAACTACCGAGGAATATCCCTGATGGCCACAGCACTTAAGGTGCTAATGG
TCGTCCTCAGCACCCGGCTTAACGGGGCGTTTGAGAAAGAGGGAATATTC
AGCAAAGCTCAAGTAGGCTTCCGGAGGAAGGAAGAATGTGTCACCCAAAG
TGCCTGCCTTTTAGAGATCACAAAGCGACGTAACCTCATGGGTTTAACCA
CGTATATGTTGTTCGTGGACCTCAAGAAGGCATATGACACGGTGCCGCAG
GAAGCCCTTATGGCGAAACTCGACTTTTATGGCGTGAGGGGACGCGCACT
CGGGTTTATTCGAGCTCTTTACTCCCAAAGCCGTATCCAGGTACGGGTGG
GGGGAACCGTGTCGGAACCAGCCGACCTCCTTCGGGGGGTTCGACAAGGG
TGCCCCCTGTCGCCTGTTCTGTTCAACATATTCATTAATGATGTGATGGA
TGGGGCGGAACGATCGGGGGTCCCAGTGCGCATGCAAGGGGGGGTAAAAA
CACGCATTCCAGCATTACTGTTTGCGGATGACCTGGTTGCCCTTTCGAGA
TCTCGTAAGGGTATTGAGAGGATGACCAGACAGGTTACAGAATGGACGGC
TGAGAATGAGATGAGTGTAGGGATACAAAAATGCGGAATAATGGTTGTGA
ACAAGCCGCTCAGCATGCTTCACCAAACCCCGGCCCGATGGCAAATAGCG
GGGCAACTTGTACCGATCGTCAGCGAGTATACGTACTTGGGGTTACGCTT
TACGGCAGACCTTGATGTGCCTTCAATGCTGAGTGATAGGGTTGCCAAAG
GGAAGAGGTTGGTGGACACGCTAACACCGTTCTTGCGTACACGGGTGATT
CCGGTACCAATGAAGGTGGCGGTGGTTAGAGGAGTGGTCATTCCGCGGCT
GTTGTTTGGAGCTGAAGTCTATGGCATGAATAAGGGCATCACTGAGCCCA
TGCAGGTCCTGCTAAACCAAGTTTGGCGGATGGTCGGGGGGATGAATCGC
AAT
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