mRNA_A-nodosum_M_contig909.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig909.23.1
Unique NamemRNA_A-nodosum_M_contig909.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig909.23.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.750e-33
Identity = 65/86 (75.58%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:   22 QAAQVDAGDDEVNTCLVEDAGLPQGSFRAQLNDFNEGKLLRISADALVADAPDSADTTGFLVRDEDFWLEAKGFRNPFRLVVLPGS 279
            +A Q D GD E NTCL ED GLPQG+FRAQ +DFNEGKLLRIS+DALVA+A   A TTGFLVRD DFWLEAKGFRNPFRL V P S
Sbjct:  216 KADQRDPGDQEENTCLREDRGLPQGNFRAQFDDFNEGKLLRISSDALVAEATADASTTGFLVRDTDFWLEAKGFRNPFRLAVSPVS 301
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig909.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.750e-3375.58PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig909contigA-nodosum_M_contig909:240124..240904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870357.635898-CDS-A-nodosum_M_contig909:240123..2403481680870357.635898-CDS-A-nodosum_M_contig909:240123..240348Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig909 240124..240348 +
1680870357.6493273-CDS-A-nodosum_M_contig909:240850..2409041680870357.6493273-CDS-A-nodosum_M_contig909:240850..240904Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig909 240851..240904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig909.23.1prot_A-nodosum_M_contig909.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig909 240124..240904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig909.23.1

>prot_A-nodosum_M_contig909.23.1 ID=prot_A-nodosum_M_contig909.23.1|Name=mRNA_A-nodosum_M_contig909.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MCRVLSLQAAQVDAGDDEVNTCLVEDAGLPQGSFRAQLNDFNEGKLLRIS
ADALVADAPDSADTTGFLVRDEDFWLEAKGFRNPFRLVVLPGS
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mRNA from alignment at A-nodosum_M_contig909:240124..240904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig909.23.1 ID=mRNA_A-nodosum_M_contig909.23.1|Name=mRNA_A-nodosum_M_contig909.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at A-nodosum_M_contig909:240124..240904+ (Ascophyllum nodosum dioecious)
ATGTGCCGTGTCCTGTCCCTGCAGGCAGCACAAGTGGACGCCGGCGACGA
TGAGGTGAACACATGTCTGGTTGAGGACGCGGGCCTTCCACAGGGCAGCT
TCCGTGCTCAGCTTAACGACTTCAACGAGGGCAAGCTGTTGCGAATTTCT
GCCGATGCCCTGGTGGCGGACGCACCCGATTCAGCGGATACGACAGGCTT
TTTAGTCCGTGACGAGGACTTCTGGGTGAGGAAGGCTTCGGGAATGCAGC
ACTCATGTTGGTCATAAAATAATAACACTATTTTGTTGTTGATAGCCTAT
TACGCTCCCGTTTAGTCTTGAGTCTTGACTGAGTCTTGTTGTATGTTTTT
GTAATGATATTTTATACTTTTATAGCCTAAGCCGTTCAGGGTGCAATCAC
TTGAGATCTTGCGAAATCTATGCATGATATTAATTTTGTTCTAAACGTTT
TTTGTCACATTGGGCCTTTTTTGCCCGTGTTTTAATTTAATTTAATGTAT
TGATTTAATGTATTGTATTGGTTTAATGTATCGTTGTTGTTTCATCTCTT
TTCATCGAAATGAAAAGTCCTCTTGTAAAGTATCGTACTTGTTCCCCTTT
TTAAAAATAATCTTGATGCGTTGGATATGTTTTTTACTTTTTTTACTTTT
CTCTCTCTACTGGCGAACCATCAAACCGCCTTGTCCGTGGCATTGACCAT
CACCATCACCATCACCATCACCATCAGCTCGAGGCGAAGGGTTTCCGCAA
CCCTTTTAGGTTGGTGGTTTTGCCTGGATCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig909:240124..240904+

>mRNA_A-nodosum_M_contig909.23.1 ID=mRNA_A-nodosum_M_contig909.23.1|Name=mRNA_A-nodosum_M_contig909.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig909:240124..240904+ (Ascophyllum nodosum dioecious)
ATGTGCCGTGTCCTGTCCCTGCAGGCAGCACAAGTGGACGCCGGCGACGA
TGAGGTGAACACATGTCTGGTTGAGGACGCGGGCCTTCCACAGGGCAGCT
TCCGTGCTCAGCTTAACGACTTCAACGAGGGCAAGCTGTTGCGAATTTCT
GCCGATGCCCTGGTGGCGGACGCACCCGATTCAGCGGATACGACAGGCTT
TTTAGTCCGTGACGAGGACTTCTGGCTCGAGGCGAAGGGTTTCCGCAACC
CTTTTAGGTTGGTGGTTTTGCCTGGATCC
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