mRNA_A-nodosum_M_contig909.12.2 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: D7FPE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE0_ECTSI) HSP 1 Score: 275 bits (703), Expect = 5.600e-82 Identity = 142/183 (77.60%), Postives = 157/183 (85.79%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKKGPHETSLGFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIYFLIRRRGVLTREDFG-SGGSYDDYGDNSY---ER----WVKPPVDD---HISATEGPNAGATPETTDL 2272
VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLK+GPH+TSLGFLIGVT+VLN+IT+MTAIYWGQLA CD+D DGDYDQYSCSN+SAMRGVAAFASIIWVLQLPFIY L++RRGVLTRED+ SGG Y DY D ++ ER W KPPVDD + A G ++G TPETTDL
Sbjct: 39 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYADYDDPAFAPGERDSGGWGKPPVDDGSPRVGAVVGSSSG-TPETTDL 220
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: A0A835Z3N9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N9_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.880e-28 Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKKGPHETSLGFLIGVTVVLNMITIMTAIYWGQLANCDT-DEDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIYFLIRRRGVL 2128
+ T F ICA VVA AG VLT L L WE G++ L+++GP S GFL+G ++V+ +T TA+YWGQLA CDT D +YSC++R AMRG AFA +IW++QLPF+ + +R VL
Sbjct: 25 LLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 149
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: A0A7S2V692_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V692_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.750e-25 Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKKGPHETSLGFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYDQYSCSNRSAMRGVAAFASIIWVLQ 2086
V TA + IC+ VVAS NAGF+ VLTGL+ V+ VGA +L K S+GFLIG + +L ++++ TAIYWGQLANC+T + QYSCSN+S R V AFAS++++LQ
Sbjct: 22 VLTACYLICSFVVASTANAGFNAVLTGLVYAVYCVGAYQVLHKSKTALSVGFLIGFSALLIVLSLETAIYWGQLANCETVSES-ISQYSCSNKSGYRAVCAFASLLFILQ 130
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: W7TS32_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS32_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.600e-21 Identity = 59/140 (42.14%), Postives = 87/140 (62.14%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKKGPHETSLGFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYD--QYSCSNRSAMRGVAAFASIIWVLQLPFIYFLIRRRGVLTREDFGSGGS-YDD 2167
VF + IC+ VVAS N GF+ VLT LL + G +L++ ++GF++GV+V++ +++MTAI+WGQLANC G YD +YSC+NRSA AFA++++++QL F L VL R++F S YDD
Sbjct: 22 VFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSP---GYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSAL-----VLWRDEFIQDSSAYDD 153
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: D8LG48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG48_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 9.260e-15 Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLL------KKGPHETSL-------GFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIYFLIRRRGVLTRED-FGSGGSYDDY 2170
V T FFICA VV+S NAG +VVLT ++ + VG + ++ G +T++ G LIG+T ++ +++MTA+YWGQ++ C+ D D D D YSC N M VA FAS + + + + LI L +ED F G YD++
Sbjct: 28 VLTICFFICACVVSSNANAGLNVVLTAMMYVAY-VGLLAVVFNRKRATDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTD-DVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALI-----LWKEDMFFVDGGYDNF 172
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: A0A7S2S6Q8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Q8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.070e-14 Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKKGPH-ETSLGFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYDQYSCSNRSAMRGVAAFASIIWVLQ 2086
+FT FFICA V A N GF+VV T + ++ + H + +GFL+G++ +++ TAI+WGQLA+CD QYSCSN SA + V AFA+++++LQ
Sbjct: 32 LFTGCFFICACVAAKTANMGFNVVFTSFCFGFHVAVGILVIHRSLHTQLWVGFLLGLSGATAWLSLQTAIFWGQLADCDRHAH-HLSQYSCSNVSAYKAVCAFAALLFILQ 141
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: A0A7R9U3K6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3K6_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.860e-13 Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 2
Query: 1757 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKKGPHETSLGFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIYFLIRRRGVLTREDFGSGGSYDD 2167
+F FFICA VV+S NAGF+ T LL ++ V + + G + L+GV + ++ TAI+WGQLA+C+ ++ + YSCS RSA AFA ++++ Q + L+ ++GSG YDD
Sbjct: 46 LFAFCFFICACVVSSTANAGFNAFTTALLNIIFCVVMIRAINFGRNALLSNVLVGVGYTMMLMNFQTAIFWGQLADCEKVKE-EIPGYSCSTRSAYGATCAFAVLLFLAQGVSTSLFYLSKDDLS--EYGSGVEYDD 179
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Match: A0A2D4BZK0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZK0_PYTIN) HSP 1 Score: 57.0 bits (136), Expect = 1.400e-5 Identity = 35/130 (26.92%), Postives = 65/130 (50.00%), Query Frame = 2
Query: 1745 VETKVFTAAFFICALVVASI-----DNAGFDVVLTGLLLCVWEVGAMWLLKKGPHETSLGFLIGVTVVLNMITIMTAIYWGQLANCDTDEDGDYDQYSCSNRSAMRGVAAFASIIWVLQLPFIYFLIRRR 2119
+ T + C L VA++ GF+ LT L V+ GA+ +L K P S+G LIG ++++ ++++ AIYWG +A + + + SA + F S+I+V+QL + +++ +
Sbjct: 9 LNTSLLAILVLSCGLXVATLFLLETPYVGFNAFLTASLHVVYAFGAIVILNKSPSAYSIGILIGASLLILVLSLEGAIYWGLVARDNLNRE-----------SASIAASGFHSLIFVIQLAVTWIVVKAK 127 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig909.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig909.12.2 >prot_A-nodosum_M_contig909.12.2 ID=prot_A-nodosum_M_contig909.12.2|Name=mRNA_A-nodosum_M_contig909.12.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=248bp MRFRAQRHGTLILLYYRPAVACKDTLREKITHATPRRDNRRKILLEGLLIback to top mRNA from alignment at A-nodosum_M_contig909:88581..93058- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig909.12.2 ID=mRNA_A-nodosum_M_contig909.12.2|Name=mRNA_A-nodosum_M_contig909.12.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4478bp|location=Sequence derived from alignment at A-nodosum_M_contig909:88581..93058- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig909:88581..93058- >mRNA_A-nodosum_M_contig909.12.2 ID=mRNA_A-nodosum_M_contig909.12.2|Name=mRNA_A-nodosum_M_contig909.12.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at A-nodosum_M_contig909:88581..93058- (Ascophyllum nodosum dioecious)back to top |