mRNA_A-nodosum_M_contig9087.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9087.3.1
Unique NamemRNA_A-nodosum_M_contig9087.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9087.3.1 vs. uniprot
Match: D8LEW8_ECTSI (CDT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW8_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.220e-51
Identity = 128/287 (44.60%), Postives = 161/287 (56.10%), Query Frame = 3 
Query:   84 PLEAMFQSLEQVLLLFRRRKQTAFFRQVKAGVEAMCGRSFTTHHLAQILFVQPDAYKVSSKTDSRPIRGGYRLRDLFIEFGEAEDPIEASPRSRESGRIEHERRVGGK--TGDEKERGASFDGPGG--------TGIESVSSQRREKFRRMLLAASARHCKCAADRE----RQSTFCECSCLPGAPLPDISPLRVEGNPCLSPSGIRLSTSAG--TKALSHIRGLLESGGVTRDGG---------------------------ESEGSDAPKNLDALRKQLRQKDML 815
            PLEAMF +LEQVL LFRRR+Q    +Q+K  VE MCGRSFT  HLA+I FVQPDAYK+SS+TD+RP RGGYRL+D+FIE G +  P + +    ++     +R VG     G     GA  DG  G         G E++S++RRE F R+L +A ARHCKC   R       +   ECSCLP APLPD  PLR +G       G R +  AG   ++ S  +GL  S G  R GG                           + EGSDAPKN++ALR++LRQKD L
Sbjct:  203 PLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTRQHLARIAFVQPDAYKLSSRTDARPTRGGYRLKDIFIETGPSPPPADEACLDDDTQGARRDR-VGKAPAAGKGAVAGADRDGRNGGDTGGHSIAGGEALSARRREIFLRLLASAKARHCKCGGSRGIAGGPSAPRDECSCLPQAPLPDTRPLRADG----IGGGSRAAPDAGGAVESPSTSQGLERSPGDGRSGGGGGGNLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDAL 484
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BLAST of mRNA_A-nodosum_M_contig9087.3.1 vs. uniprot
Match: A0A6H5K955_9PHAE (CDT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K955_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.780e-48
Identity = 123/292 (42.12%), Postives = 152/292 (52.05%), Query Frame = 3 
Query:   96 MFQSLEQVLLLFRRRKQTAFFRQVKAGVEAMCGRSFTTHHLAQILFVQPDAYKVSSKTDSRPIRGGYRLRDLFIEFGEAEDPIEASPRSRESGRIEHERRVGGKTGDEKERGASFDGP----------GGTGIESVSSQRREKFRRMLLAASARHCKCAADR----ERQSTFCECSCLPGAPLPDISPLRVEGNPCLSPSGIRLSTSAGTKALSHIRGLLES------------------GGV-------TRDGG-------------ESEGSDAPKNLDALRKQLRQKDML 815
            MF +LEQVL LFRRR+Q    +Q+K  VE MCGRSFT  HLAQI FVQPDAYK+SSKTD+RP RGGYRLRD+FIE G +  P + +    ++     +R VG      K   A  D               G E++S++RR  F R+L +A ARHCKC        E  +   ECSCLP APLPD  PLR +G             S G++A +H  G  ES                  GG+       T  GG             + EG DAPKNL+ALR++LRQKD L
Sbjct:    1 MFLALEQVLTLFRRRRQATLLKQIKPAVEGMCGRSFTRQHLAQIAFVQPDAYKLSSKTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRDR-VGKAPAAGKGAVAGADXXXXXXXXXXXRSNAGGEALSARRRGIFLRLLASARARHCKCGGSEGITNEPSAPRDECSCLPQAPLPDTRPLRADG------------ISGGSRAAAHAGGAAESPSTSQGLERSPVDGRCGGGGIGGNLLPGTSRGGCVASGMSGGRVDYDEEGPDAPKNLEALRERLRQKDAL 279
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9087.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW8_ECTSI2.220e-5144.60CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K955_9PHAE2.780e-4842.12CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9087contigA-nodosum_M_contig9087:16415..18480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1164
Hectar predicted targeting categorymitochondrion
Exons3
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870356.4634657-UTR-A-nodosum_M_contig9087:16414..165091680870356.4634657-UTR-A-nodosum_M_contig9087:16414..16509Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9087 16415..16509 +
1680870356.514576-UTR-A-nodosum_M_contig9087:18269..184801680870356.514576-UTR-A-nodosum_M_contig9087:18269..18480Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9087 18270..18480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870356.4827704-CDS-A-nodosum_M_contig9087:16509..166571680870356.4827704-CDS-A-nodosum_M_contig9087:16509..16657Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9087 16510..16657 +
1680870356.49225-CDS-A-nodosum_M_contig9087:17333..176161680870356.49225-CDS-A-nodosum_M_contig9087:17333..17616Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9087 17334..17616 +
1680870356.5055265-CDS-A-nodosum_M_contig9087:17842..182691680870356.5055265-CDS-A-nodosum_M_contig9087:17842..18269Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9087 17843..18269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9087.3.1prot_A-nodosum_M_contig9087.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9087 16510..18269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9087.3.1

>prot_A-nodosum_M_contig9087.3.1 ID=prot_A-nodosum_M_contig9087.3.1|Name=mRNA_A-nodosum_M_contig9087.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=286bp
MFQSLEQVLLLFRRRKQTAFFRQVKAGVEAMCGRSFTTHHLAQILFVQPD
AYKVSSKTDSRPIRGGYRLRDLFIEFGEAEDPIEASPRSRESGRIEHERR
VGGKTGDEKERGASFDGPGGTGIESVSSQRREKFRRMLLAASARHCKCAA
DRERQSTFCECSCLPGAPLPDISPLRVEGNPCLSPSGIRLSTSAGTKALS
HIRGLLESGGVTRDGGESEGSDAPKNLDALRKQLRQKDMLRSGVSEYHSL
ISFGHRAASHGMFFAFHTRSLWRFSSLEVEIFCRK*
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mRNA from alignment at A-nodosum_M_contig9087:16415..18480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9087.3.1 ID=mRNA_A-nodosum_M_contig9087.3.1|Name=mRNA_A-nodosum_M_contig9087.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2066bp|location=Sequence derived from alignment at A-nodosum_M_contig9087:16415..18480+ (Ascophyllum nodosum dioecious)
AGACCGACGGAGAAACCACGAATCATCCGGTGTTGCTCGAGGAATGCGGC
AAGGTTGATACCGACATCGACTCGCAGGAAAACCCGTTGGAGGCCATGTT
TCAATCTCTGGAGCAAGTGCTGCTCTTGTTCCGGCGACGGAAGCAGACCG
CTTTTTTTCGGCAGGTCAAGGCTGGCGTGGAAGCGATGTGCGGTAGGTCC
TTCACGACACATCACCTGGCGCAAATCCTCTTCGTCCAGCCTGGTGAGGA
AACGGAAGCATTCGGCACAAAAGAGCATTTGCGGAAGAGATTCGTAGCGT
ATTTTCAGTGTGTTAAAATAGTAATGCTGATGCGTTAAGGTTTGCCCCCT
TGGTCTTGGTACAGTATGCAAGTATTCATCTTTTCACGTACAAGCAACTC
AAACTCCTCTTGGAGGATCATTATCATTGTTGTTCCCTCTGCTCCTCTCA
ACAAATGATCGCGCGAGGAGCAGAGGGGGGAAATATTTTGTCCGTGCTAA
ACCTAAACCATCTGTCCACGAGTTCTGACTCTGCTTCAATCGTGCATCTG
ACCTGTCCTGTGAGTTGTTTCACCTCCATTCTGCAACACCCAAACGGTTT
GACATTTTTTCCCCTCCCGACCGGGGGATGCTCAGAAGGTCTAGATGCGT
TCAGGCTTTTCTTTAAACGCTTGTACCATATTCGGTTTGGTTCAAAACCA
TTCCTTATCGACCGAGAGTTTGTTGTCTCATCTGTGCTATCTACTAATAC
TTTACGCAGCAGTACACTTCTGGAGTTCCGAGTCTCGGAAGGCGTTTCTA
GTGAGGCAAATCGGATTCTCTCCGAATTGGAAACATGTTCGAGAGGCACG
ATCTGAGAACCAGCTTAGAGTTATTTTGTAAAATGAACAATAGTTATGTT
TACTGTTCCCCGGGTACAGATGCGTATAAGGTTTCCAGCAAGACCGACTC
GAGACCGATCCGGGGGGGCTATCGTCTCAGGGATTTGTTCATCGAGTTCG
GTGAGGCGGAGGACCCGATAGAGGCAAGCCCGAGATCAAGGGAAAGCGGG
CGCATTGAACATGAAAGACGCGTGGGTGGCAAAACGGGTGACGAGAAGGA
GCGCGGCGCAAGTTTCGATGGCCCAGGCGGTACTGGAATCGAAAGCGTGT
CATCACAGAGGAGGGAGAAGTTTCGACGGATGCTGCTGGCTGCAAGTGCG
AGGTGAGGATTACAAACTCGATAGTCTGCTCCGGCCTCGTGGCTTCGAAA
CCTTCGACGACATGCGCTGACGAGAAGAGCAACGTCGATTTCGAGTGTCG
AACTTTCTTAAATATCGAAGTTTTCCCGCGCGTTTGCCTTGTCCCCATCC
AACTCCAACAGCCGTGCGTCTCCTTCCTGCCCGTCGCACCCCTCTCACTC
CTCTCACTTCACGGATACTTCTCCGTAGACACTGCAAGTGCGCCGCAGAT
CGGGAACGACAGTCAACCTTTTGCGAGTGCTCTTGCTTGCCCGGGGCCCC
TCTCCCAGATATCAGCCCGCTGCGAGTGGAAGGAAACCCTTGTCTTAGCC
CCAGTGGAATTCGGCTGTCAACCTCTGCGGGGACGAAAGCCCTGTCGCAT
ATCCGAGGCTTGTTGGAATCCGGCGGCGTTACCCGGGACGGCGGGGAATC
GGAGGGATCAGACGCTCCGAAGAATTTGGACGCTCTGAGGAAACAACTCA
GGCAAAAAGACATGCTCAGGTCAGGTGTTAGCGAGTATCATTCCCTGATT
TCGTTCGGACATCGGGCTGCGAGTCATGGCATGTTCTTCGCCTTCCACAC
CCGTTCGTTATGGAGATTTTCCTCCCTCGAAGTTGAGATTTTTTGCCGGA
AGTAAACCGATCTTTCCGTGGCAATCACGTGGAAAAGGATATCTTAGGAC
CACGAAATTCATCGCAGGATCCGCAGCAAGAGTCGCCCCACATTCGCTGT
CCACGTTTCGGCGCCATCTCCTCCGGAAGAAAATACGTGATTTTCAAGTG
GATCGCTCCGTGTACTCGCATTTTCACATTGCTCTACATTTGGTCACCCA
TATCTGGTACCGTCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9087:16415..18480+

>mRNA_A-nodosum_M_contig9087.3.1 ID=mRNA_A-nodosum_M_contig9087.3.1|Name=mRNA_A-nodosum_M_contig9087.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at A-nodosum_M_contig9087:16415..18480+ (Ascophyllum nodosum dioecious)
ATGTTTCAATCTCTGGAGCAAGTGCTGCTCTTGTTCCGGCGACGGAAGCA
GACCGCTTTTTTTCGGCAGGTCAAGGCTGGCGTGGAAGCGATGTGCGGTA
GGTCCTTCACGACACATCACCTGGCGCAAATCCTCTTCGTCCAGCCTGAT
GCGTATAAGGTTTCCAGCAAGACCGACTCGAGACCGATCCGGGGGGGCTA
TCGTCTCAGGGATTTGTTCATCGAGTTCGGTGAGGCGGAGGACCCGATAG
AGGCAAGCCCGAGATCAAGGGAAAGCGGGCGCATTGAACATGAAAGACGC
GTGGGTGGCAAAACGGGTGACGAGAAGGAGCGCGGCGCAAGTTTCGATGG
CCCAGGCGGTACTGGAATCGAAAGCGTGTCATCACAGAGGAGGGAGAAGT
TTCGACGGATGCTGCTGGCTGCAAGTGCGAGACACTGCAAGTGCGCCGCA
GATCGGGAACGACAGTCAACCTTTTGCGAGTGCTCTTGCTTGCCCGGGGC
CCCTCTCCCAGATATCAGCCCGCTGCGAGTGGAAGGAAACCCTTGTCTTA
GCCCCAGTGGAATTCGGCTGTCAACCTCTGCGGGGACGAAAGCCCTGTCG
CATATCCGAGGCTTGTTGGAATCCGGCGGCGTTACCCGGGACGGCGGGGA
ATCGGAGGGATCAGACGCTCCGAAGAATTTGGACGCTCTGAGGAAACAAC
TCAGGCAAAAAGACATGCTCAGGTCAGGTGTTAGCGAGTATCATTCCCTG
ATTTCGTTCGGACATCGGGCTGCGAGTCATGGCATGTTCTTCGCCTTCCA
CACCCGTTCGTTATGGAGATTTTCCTCCCTCGAAGTTGAGATTTTTTGCC
GGAAGTAA
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