mRNA_A-nodosum_M_contig9083.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9083.1.1
Unique NamemRNA_A-nodosum_M_contig9083.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: D7FYG7_ECTSI (bPH_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYG7_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.600e-71
Identity = 108/121 (89.26%), Postives = 116/121 (95.87%), Query Frame = 1
Query:   31 QVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILERTTA 393
            +VKLE EVTFFEGGPDPSE+VAPAVSILTVIGIVPF+AALARQAWVKYT+TSRRIKIVSGW GKDTTEVVYPDIVDM +VWR FGRCGDLV+TLRDGSKLEIRSLP+FERNYNYI ERT+A
Sbjct:  107 KVKLEAEVTFFEGGPDPSEVVAPAVSILTVIGIVPFSAALARQAWVKYTLTSRRIKIVSGWNGKDTTEVVYPDIVDMVYVWRFFGRCGDLVLTLRDGSKLEIRSLPDFERNYNYIRERTSA 227          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A836CBY9_9STRA (bPH_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY9_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.440e-55
Identity = 88/121 (72.73%), Postives = 103/121 (85.12%), Query Frame = 1
Query:   31 QVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILERTTA 393
            +VKLEPEVT FEG PD SE   PAVS+LTVIGI+PF A+LARQAWV+YTITSRRI++VSG  G+D TEVVYPDI  M +V+R FGRCGD+V+ LRDGSKLE+RSLP FE NYN+IL RTT+
Sbjct:   93 KVKLEPEVTQFEGAPDISETFVPAVSVLTVIGIIPFAASLARQAWVRYTITSRRIRVVSGINGRDETEVVYPDIKRMVYVYRMFGRCGDVVMELRDGSKLELRSLPNFEENYNFILSRTTS 213          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A7R9UCQ1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCQ1_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.490e-48
Identity = 74/118 (62.71%), Postives = 95/118 (80.51%), Query Frame = 1
Query:   31 QVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILER 384
            +V LEPE  F+EG P  SE+V PA+SI TVIG++PF+AA  RQAWV+YTITSRRI++ SG+QG+D TE++YPDI  M++ WRSFG  GD+VI LRDG+++E+RSLPEFER Y  I  R
Sbjct:   72 KVALEPEEVFYEGPPSKSELVGPALSIFTVIGLIPFSAAAVRQAWVRYTITSRRIRVTSGYQGQDETEIIYPDIKSMKYAWRSFGAAGDVVIELRDGARVEMRSLPEFERLYKEIFSR 189          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A7S2UZ45_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ45_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.120e-45
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:   31 QVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYI 375
            +V + PE  FFEG P  +E+V PA+S+LTVIGI+PF AA++RQAWVK+ IT+RR+ + SG+ GKD TEV YP+I DM++++R+FG  GD+ ITLRDGSKLE+RSLP FE NY YI
Sbjct:   82 KVVIGPEEVFFEGPPSWTEVVVPAISVLTVIGIIPFAAAVSRQAWVKFKITNRRLSVTSGFGGKDQTEVAYPEIKDMKYIYRAFGAAGDVAITLRDGSKLELRSLPNFEENYRYI 196          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: W7TZL4_9STRA (Eribonuclease p n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZL4_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.050e-43
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   31 QVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYI 375
            ++KLEPE  FFEG P  SE+V PA+SILTVIGI+PF +++ARQ WVKY ITSRRI + SG  GKD TEV+Y DI  + +V+R+FG  GD+V+ LRDG+KLEIRSLP F   YNYI
Sbjct:   96 KMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYI 210          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A7S2SV15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV15_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.690e-42
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   40 LEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILER 384
            LEPEV FFEG P  +E+V P +SILTVIGIVPF A L+RQ WVKY ITSRR+ + SG  GKD TE+ Y +I  M+FV+RSFG  GD+VITLRDG++LE+RS+P F+  Y YI ++
Sbjct:   85 LEPEVVFFEGPPSWTEVVLPTISILTVIGIVPFIATLSRQFWVKYKITSRRVSVQSGIGGKDLTEITYDEIYLMKFVYRSFGTVGDMVITLRDGARLEMRSVPNFKEVYQYIFDK 199          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A7S4ECW5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECW5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.480e-41
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 LEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILER 384
            LEPE  FFEG P  +E++ P +S+LTVIGIVPF AA ARQAWVKY ITSRRI + SG  G+D TE+VY DI  M+FV+R     GDLVI+LRDG+KLE+R +P+F+  Y YI ER
Sbjct:   69 LEPETLFFEGPPSKTELIVPGLSVLTVIGIVPFAAAAARQAWVKYKITSRRISVQSGVGGQDFTEIVYSDIAGMKFVYRGSKDVGDLVISLRDGAKLEMRFVPQFQEIYRYIYER 183          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A8J5XA73_DIALT (bPH_2 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XA73_DIALT)

HSP 1 Score: 143 bits (361), Expect = 7.140e-41
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 1
Query:   46 PEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILERTT 390
            PEVTFFEG P  +E V PAVSI+TV+GIVPF AA++RQ W +Y IT+RR+ I SGW G D  EVVY DI  + F++R  G  GD+V+ L DG+KLEIRS+P+FE+NY+YI+ + +
Sbjct:   62 PEVTFFEGPPSWTEAVVPAVSIITVLGIVPFAAAISRQVWTRYKITNRRLSIQSGWGGNDLVEVVYRDITKVNFIFRFGGLAGDMVMQLSDGAKLEIRSMPDFEKNYDYIMSQVS 176          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A5J4YNW6_PORPP (bPH_2 domain-containing protein n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNW6_PORPP)

HSP 1 Score: 139 bits (349), Expect = 3.500e-39
Identity = 66/119 (55.46%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   28 PQVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILER 384
            P+ KLEPEV FFEG P  +E++ PA++ LTVIGI+PF AA ARQ WV+Y +TSRR+ I  G+QGKD  E+VY D+  M++V R  G   DLVI L+DG++LE+RS+P+F+  YN+IL++
Sbjct:   49 PKQKLEPEVVFFEGKPAWTELIIPAITTLTVIGIIPFIAAAARQFWVRYKVTSRRVSIDGGFQGKDHVEIVYRDVESMKYVRRMGGGSADLVIFLKDGARLELRSVPDFKNIYNFILDQ 167          
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Match: A0A7S0T572_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T572_9RHOD)

HSP 1 Score: 139 bits (349), Expect = 5.880e-39
Identity = 66/118 (55.93%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   31 QVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAALARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDLVITLRDGSKLEIRSLPEFERNYNYILER 384
            ++KLEPE  FF+G P  +E+V PA++ILTVIGI+PF AA ARQ WVKY +TSRRI +  G+QGKD  E+VY DI ++R++ R  G   D+VI LRDG+KLE+RS+P+F+  Y +IL++
Sbjct:   69 KMKLEPEEVFFDGKPSWTELVVPALTILTVIGIIPFIAAAARQVWVKYRVTSRRIAVDGGFQGKDHVEIVYRDIEEIRYIRRMGGSAADMVIFLRDGAKLELRSVPDFKNIYGFILKQ 186          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYG7_ECTSI3.600e-7189.26bPH_2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CBY9_9STRA4.440e-5572.73bPH_2 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7R9UCQ1_9STRA7.490e-4862.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2UZ45_9STRA2.120e-4561.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TZL4_9STRA8.050e-4363.48Eribonuclease p n=2 Tax=Monodopsidaceae TaxID=4250... [more]
A0A7S2SV15_9STRA5.690e-4261.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4ECW5_9STRA4.480e-4161.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J5XA73_DIALT7.140e-4158.26bPH_2 domain-containing protein n=2 Tax=Diacronema... [more]
A0A5J4YNW6_PORPP3.500e-3955.46bPH_2 domain-containing protein n=2 Tax=Porphyridi... [more]
A0A7S0T572_9RHOD5.880e-3955.93Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9083contigA-nodosum_M_contig9083:14167..15515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0R2J8
PFAMsbPH_2
Model size399
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.29e-35
EggNOG OGs2CV50@1|root,2RRAK@2759|Eukaryota,2XCDC@2836|Bacillariophyta
Ec32 ortholog descriptionDomain of unknown function DUF304
Ec32 orthologEc-19_001080.1
DescriptionBacterial PH domain
Cds size399
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870356.188904-CDS-A-nodosum_M_contig9083:14166..142781680870356.188904-CDS-A-nodosum_M_contig9083:14166..14278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9083 14167..14278 -
1680870356.2016146-CDS-A-nodosum_M_contig9083:14673..147621680870356.2016146-CDS-A-nodosum_M_contig9083:14673..14762Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9083 14674..14762 -
1680870356.2136776-CDS-A-nodosum_M_contig9083:15317..155151680870356.2136776-CDS-A-nodosum_M_contig9083:15317..15515Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9083 15318..15515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9083.1.1prot_A-nodosum_M_contig9083.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9083 14167..15515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9083.1.1

>prot_A-nodosum_M_contig9083.1.1 ID=prot_A-nodosum_M_contig9083.1.1|Name=mRNA_A-nodosum_M_contig9083.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
MRSPPRPPPPQVKLEPEVTFFEGGPDPSEIVAPAVSILTVIGIVPFTAAL
ARQAWVKYTITSRRIKIVSGWQGKDTTEVVYPDIVDMRFVWRSFGRCGDL
VITLRDGSKLEIRSLPEFERNYNYILERTTAM*
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mRNA from alignment at A-nodosum_M_contig9083:14167..15515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9083.1.1 ID=mRNA_A-nodosum_M_contig9083.1.1|Name=mRNA_A-nodosum_M_contig9083.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1349bp|location=Sequence derived from alignment at A-nodosum_M_contig9083:14167..15515- (Ascophyllum nodosum dioecious)
ATGCGGTCGCCCCCCCGCCCCCCTCCCCCCCAGGTAAAGCTCGAGCCCGA AGTCACTTTTTTCGAGGGTGGGCCAGATCCCTCGGAAATCGTGGCACCCG CGGTTTCCATCTTGACGGTGATAGGGATCGTGCCCTTTACGGCGGCACTG GCGCGTCAAGCGTGGGTCAAGTACACAATCACTTCGCGACGCATCAAGGT CAGTCGCTTGGCAACATAGTCTACAGGGAAAGGAAGGGAGATGTGCTTGC TTCTCTTGAACGTCGTCAAAAGAGATAGGAGACTCTTGAAGGCGTACGTC GCACTATTTATGGGCGGTGCTTAAAGAAAAATCAGAACGCGCCTAGACCT TTTGAGCATCCCCCAGTCAGGGGGGAAAAGATGTCAAAACGTTTAGGTGG GATCAAAGGCTGCAAATACAAAACCTTTTTCTGGGCGGTGTTCCTGAAGG TGGAGGAAGCAGAAGTGATGTCCCCTCCTTCTCCCCCCTCTTCTCGTCCG GGCAGAGAGTAACAAAAAATAAAAAAAAGCGCAGTATCATTTTTCCTGTG GGGCGGGTGCGCAGCGCCGGGCTTGATCGCTCGTGGACAATCTCCCGTCC CGCCGAGGAACACACGTTTTTTTCCCCGAGTCGGGTGGAATTCAGATTTT AGTTCGAATTTCATTTGTGATACGGACATGCTCTAACACTCTCTCTGCCC AACGCTCTCTCTGCCCTGCGCGTTCTGTGTCGTACCCGGTCTGGTACCAG TAGATTGTGAGCGGATGGCAAGGGAAGGACACCACAGAGGTGGTGTACCC GGACATAGTCGACATGAGATTCGTTTGGCGATCATTCGGGAGGTAATGCG GATGGGTTGCTGCTGTCTTCCCCCTGCCCTTTTTGCCTAGATCGAAACCT TGCCATTTTTTGACAGCTCGCCGCTCCCCATGTGGAGTATCGCCCGAATT GCTCCAAATGAGGCGAAATAGGCGCGCTACGGACGCTTTTCGCCTACTGT ACTGCAGGAAGCCTATTACCACCACGATTGTCGTCGTTGCTGCAGTGCTC TCCCTTGCATGGGCCGTTTGGCGTTTGACTGCTCTACTGCCTCGCACCTT CGCTGGAGGCACGAGTCTCGGCAGATGCAGATTTTTCAGGTCGTCGGGAC ACGACCCCTACGACACACTCTCCTTGGCCTTGACACCGTGACCAAACGTT ACCTTACACGTCGCGTACCCTGATGTATGCATCGCAGATGCGGAGATCTG GTTATCACGCTGCGCGACGGGTCAAAGCTGGAGATTCGGTCGCTGCCGGA ATTTGAACGGAACTACAACTACATCTTGGAGCGGACGACGGCCATGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9083:14167..15515-

>mRNA_A-nodosum_M_contig9083.1.1 ID=mRNA_A-nodosum_M_contig9083.1.1|Name=mRNA_A-nodosum_M_contig9083.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig9083:14167..15515- (Ascophyllum nodosum dioecious)
ATGCGGTCGCCCCCCCGCCCCCCTCCCCCCCAGGTAAAGCTCGAGCCCGA
AGTCACTTTTTTCGAGGGTGGGCCAGATCCCTCGGAAATCGTGGCACCCG
CGGTTTCCATCTTGACGGTGATAGGGATCGTGCCCTTTACGGCGGCACTG
GCGCGTCAAGCGTGGGTCAAGTACACAATCACTTCGCGACGCATCAAGAT
TGTGAGCGGATGGCAAGGGAAGGACACCACAGAGGTGGTGTACCCGGACA
TAGTCGACATGAGATTCGTTTGGCGATCATTCGGGAGATGCGGAGATCTG
GTTATCACGCTGCGCGACGGGTCAAAGCTGGAGATTCGGTCGCTGCCGGA
ATTTGAACGGAACTACAACTACATCTTGGAGCGGACGACGGCCATGTAA
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