mRNA_A-nodosum_M_contig9074.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9074.2.1
Unique NamemRNA_A-nodosum_M_contig9074.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9074.2.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.700e-12
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 RALPKEYDFVRQQSHMNRNFGLTGIKLTAIDMFIDGLSRKSSASAVAGREVAMQA 165
            RAL KEY F+RQ SH +R FGLT I+ T ++M+ID LSRKSS  +VAGR VAM A
Sbjct:  129 RALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9074.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE5.700e-1263.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9074contigA-nodosum_M_contig9074:3474..3715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size244
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870356.1201231-CDS-A-nodosum_M_contig9074:3473..37131680870356.1201231-CDS-A-nodosum_M_contig9074:3473..3713Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9074 3474..3713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9074.2.1prot_A-nodosum_M_contig9074.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9074 3474..3713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9074.2.1

>prot_A-nodosum_M_contig9074.2.1 ID=prot_A-nodosum_M_contig9074.2.1|Name=mRNA_A-nodosum_M_contig9074.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
RALPKEYDFVRQQSHMNRNFGLTGIKLTAIDMFIDGLSRKSSASAVAGRE
VAMQATQGHGKKQQYKRGKDNKKRGGGASK
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mRNA from alignment at A-nodosum_M_contig9074:3474..3715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9074.2.1 ID=mRNA_A-nodosum_M_contig9074.2.1|Name=mRNA_A-nodosum_M_contig9074.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=242bp|location=Sequence derived from alignment at A-nodosum_M_contig9074:3474..3715+ (Ascophyllum nodosum dioecious)
CGTGCCTTGCCTAAGGAGTACGACTTCGTTCGGCAGCAATCCCACATGAA
CCGCAACTTCGGTTTGACAGGCATCAAATTGACAGCAATAGACATGTTCA
TTGATGGCCTTTCCCGCAAGTCATCTGCTTCTGCCGTCGCCGGTCGTGAA
GTGGCCATGCAAGCTACCCAAGGCCACGGCAAGAAGCAACAGTACAAGCG
CGGCAAGGACAACAAGAAACGGGGCGGCGGCGCTTCAAAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9074:3474..3715+

>mRNA_A-nodosum_M_contig9074.2.1 ID=mRNA_A-nodosum_M_contig9074.2.1|Name=mRNA_A-nodosum_M_contig9074.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig9074:3474..3715+ (Ascophyllum nodosum dioecious)
CGTGCCTTGCCTAAGGAGTACGACTTCGTTCGGCAGCAATCCCACATGAA
CCGCAACTTCGGTTTGACAGGCATCAAATTGACAGCAATAGACATGTTCA
TTGATGGCCTTTCCCGCAAGTCATCTGCTTCTGCCGTCGCCGGTCGTGAA
GTGGCCATGCAAGCTACCCAAGGCCACGGCAAGAAGCAACAGTACAAGCG
CGGCAAGGACAACAAGAAACGGGGCGGCGGCGCTTCAAAA
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