mRNA_A-nodosum_M_contig9070.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9070.2.1
Unique NamemRNA_A-nodosum_M_contig9070.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: D8LQB6_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB6_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.940e-16
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            KVIEDLQ+VGAM++PGAGKNDIPNRLKRHFFI NM  PP E ++AI
Sbjct: 1470 KVIEDLQYVGAMNHPGAGKNDIPNRLKRHFFIFNMIVPPEESINAI 1515
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A6H5KIA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.940e-16
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            KVIEDLQ+VGAM++PGAGKNDIPNRLKRHFFI NM  PP E ++AI
Sbjct: 2560 KVIEDLQYVGAMNHPGAGKNDIPNRLKRHFFIFNMIVPPEESINAI 2605
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A024GM83_9STRA (Uncharacterized protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GM83_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            KV EDLQ+VGAM +PGAGKNDIPNRLKR FFI N+  P +  +D I
Sbjct: 2654 KVCEDLQYVGAMGHPGAGKNDIPNRLKRQFFIFNLILPSLTSIDDI 2699
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A078A0K0_STYLE (Dynein heavy chain n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078A0K0_STYLE)

HSP 1 Score: 68.9 bits (167), Expect = 2.260e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            K IE LQ++GAM++PG G+NDIPNRLKRHFFI+NMT+P    ++ I
Sbjct: 2621 KQIEGLQYLGAMNHPGGGRNDIPNRLKRHFFIINMTSPSQRSIENI 2666
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A7S3MRB9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3MRB9_9SPIT)

HSP 1 Score: 64.3 bits (155), Expect = 9.770e-12
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   19 IEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            IE LQF+GAM++PG G+NDIP+RLKRHFF +NMT+P    ++ I
Sbjct:   51 IEKLQFLGAMNHPGGGRNDIPHRLKRHFFSINMTSPSTRSIENI 94
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: K3WB71_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB71_GLOUD)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            K+IEDL+F+ AMS+P  GKNDIPNRLKRHF +LN+ +P  E ++AI
Sbjct: 2650 KMIEDLRFLSAMSHPKGGKNDIPNRLKRHFMVLNVLSPTSELVEAI 2695
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BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A7S3RRX7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RRX7_9SPIT)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            K I++L+FVGAM +PG G+ND+P+RLKRHFF++NMTAP    ++ I
Sbjct:  264 KQIQNLKFVGAMMHPGGGRNDVPDRLKRHFFLMNMTAPSQRSIENI 309
[Close]
BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A6A5BEF7_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BEF7_NAEFO)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   19 IEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            IEDLQF+ AMS+PG GKNDIP RLKRHF ILN+T P    +D I
Sbjct: 2542 IEDLQFIAAMSHPGGGKNDIPERLKRHFAILNITLPTAASIDQI 2585
[Close]
BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: K3WIV7_GLOUD (Uncharacterized protein n=36 Tax=Oomycota TaxID=4762 RepID=K3WIV7_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            KV EDLQ+VGAM +PG G+NDIPNRLKR FFI N+  P +  +D I
Sbjct: 2653 KVCEDLQYVGAMGHPGGGRNDIPNRLKRQFFIFNLILPSLTSIDDI 2698
[Close]
BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Match: A0A418G1H4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418G1H4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.010e-11
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 KVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI 150
            KV EDLQ+VGAM +PG G+NDIPNRLKR FF+ N+  P +  +D I
Sbjct:  887 KVCEDLQYVGAMGHPGGGRNDIPNRLKRQFFLFNLVLPSLTSIDDI 932
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9070.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB6_ECTSI1.940e-1678.26Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KIA9_9PHAE1.940e-1678.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024GM83_9STRA1.650e-1267.39Uncharacterized protein n=2 Tax=Albugo TaxID=65356... [more]
A0A078A0K0_STYLE2.260e-1263.04Dynein heavy chain n=2 Tax=Oxytrichidae TaxID=5750... [more]
A0A7S3MRB9_9SPIT9.770e-1261.36Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
K3WB71_GLOUD1.080e-1163.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3RRX7_9SPIT1.470e-1158.70Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A6A5BEF7_NAEFO1.470e-1168.18Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
K3WIV7_GLOUD1.470e-1163.04Uncharacterized protein n=36 Tax=Oomycota TaxID=47... [more]
A0A418G1H4_9STRA2.010e-1160.87Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9070contigA-nodosum_M_contig9070:16712..16861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQB6
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size150
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons1
Evalue3.17e-17
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size150
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.9881666-CDS-A-nodosum_M_contig9070:16711..168611680870355.9881666-CDS-A-nodosum_M_contig9070:16711..16861Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9070 16712..16861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9070.2.1prot_A-nodosum_M_contig9070.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9070 16712..16861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9070.2.1

>prot_A-nodosum_M_contig9070.2.1 ID=prot_A-nodosum_M_contig9070.2.1|Name=mRNA_A-nodosum_M_contig9070.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MWSPKVIEDLQFVGAMSYPGAGKNDIPNRLKRHFFILNMTAPPMERMDAI
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mRNA from alignment at A-nodosum_M_contig9070:16712..16861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9070.2.1 ID=mRNA_A-nodosum_M_contig9070.2.1|Name=mRNA_A-nodosum_M_contig9070.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig9070:16712..16861+ (Ascophyllum nodosum dioecious)
ATGTGGTCACCTAAGGTCATTGAAGATTTGCAGTTTGTTGGCGCGATGAG
CTACCCTGGCGCCGGCAAAAACGATATACCTAACCGTCTCAAGCGCCACT
TTTTCATCCTCAACATGACTGCTCCGCCAATGGAGAGAATGGACGCCATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9070:16712..16861+

>mRNA_A-nodosum_M_contig9070.2.1 ID=mRNA_A-nodosum_M_contig9070.2.1|Name=mRNA_A-nodosum_M_contig9070.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig9070:16712..16861+ (Ascophyllum nodosum dioecious)
ATGTGGTCACCTAAGGTCATTGAAGATTTGCAGTTTGTTGGCGCGATGAG
CTACCCTGGCGCCGGCAAAAACGATATACCTAACCGTCTCAAGCGCCACT
TTTTCATCCTCAACATGACTGCTCCGCCAATGGAGAGAATGGACGCCATT
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