mRNA_A-nodosum_M_contig9070.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9070.1.1
Unique NamemRNA_A-nodosum_M_contig9070.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: D8LQB6_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-18
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSRVDVLRHFFK 159
            +VEDLRNASPATVSRAGIIYV+DS+LDWQPVME  LKKLP  R D+LR FF+
Sbjct: 1118 EVEDLRNASPATVSRAGIIYVSDSDLDWQPVMESRLKKLPPGRGDILREFFR 1169
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A6H5KIA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.840e-18
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSRVDVLRHFFK 159
            +VEDLRNASPATVSRAGIIYV+DS+LDW+PVME  LKKLP  R D+LR FF+
Sbjct: 2208 EVEDLRNASPATVSRAGIIYVSDSDLDWKPVMESRLKKLPPGRGDILREFFR 2259
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A0W8AYI1_PHYNI (Dynein heavy chain 8 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8AYI1_PHYNI)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-11
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSR 132
            +VEDLRNASPATVSRAGI+YV+D++LDWQPV +R L+  P S+
Sbjct: 1026 EVEDLRNASPATVSRAGIVYVSDTDLDWQPVAQRWLRMRPDSQ 1068
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: W2Q0S5_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q0S5_PHYPN)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-11
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSR 132
            +VEDLRNASPATVSRAGI+YV+D++LDWQPV +R L+  P S+
Sbjct: 2333 EVEDLRNASPATVSRAGIVYVSDTDLDWQPVAQRWLRMRPDSQ 2375
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A024U4G7_9STRA (Uncharacterized protein n=24 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U4G7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.140e-11
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSRVDVLRHFF 156
            +VE L NASPATVSRAGI++V+D++LDW PV+E  ++K P+S  D LR  F
Sbjct: 2262 EVETLVNASPATVSRAGIVFVSDTDLDWAPVVEAWIRKRPASHQDTLRQLF 2312
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A7S2PBW9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PBW9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.280e-11
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLP-SSRVDVLRHFFK 159
            +VE L NASPATVSRAGIIYV+D+ LDW PV+E  ++K P S+R DVLR   K
Sbjct:  708 EVETLVNASPATVSRAGIIYVSDTELDWAPVLESWIRKRPDSNRKDVLRSLVK 760
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A225WBC5_9STRA (Dynein heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBC5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.280e-11
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSR 132
            +VEDLRNASPATVSRAGI+YV+D++LDW+PV +R L+  P S+
Sbjct: 2461 EVEDLRNASPATVSRAGIVYVSDTDLDWEPVAQRWLRMRPESQ 2503
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BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A833T1Z5_PHYIN (ATPase family associated domain-containing protein 8 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T1Z5_PHYIN)

HSP 1 Score: 65.9 bits (159), Expect = 4.280e-11
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSR 132
            +VEDLRNASPATVSRAGI+YV+D++LDW+PV +R L+  P S+
Sbjct: 2336 EVEDLRNASPATVSRAGIVYVSDTDLDWEPVAQRWLRMRPDSQ 2378
[Close]
BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: A0A6G0PUQ9_9STRA (Dynein gamma chain, flagellar outer arm n=12 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PUQ9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.290e-11
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSR 132
            +VEDLRNASPATVSRAGI+YV+D++LDW+PV +R L+  P S+
Sbjct: 2362 EVEDLRNASPATVSRAGIVYVSDTDLDWEPVAQRWLRMRPDSQ 2404
[Close]
BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Match: G4ZHE2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZHE2_PHYSP)

HSP 1 Score: 65.5 bits (158), Expect = 5.860e-11
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 KVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSR 132
            +VEDLRNASPATVSRAGI+YV+D++LDW+PV +R L+  P S+
Sbjct: 2371 EVEDLRNASPATVSRAGIVYVSDTDLDWEPVAQRWLRLRPDSQ 2413
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB6_ECTSI1.100e-1878.85Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KIA9_9PHAE3.840e-1876.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0W8AYI1_PHYNI1.680e-1169.77Dynein heavy chain 8 n=1 Tax=Phytophthora nicotian... [more]
W2Q0S5_PHYPN1.680e-1169.77Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
A0A024U4G7_9STRA3.140e-1158.82Uncharacterized protein n=24 Tax=Saprolegniaceae T... [more]
A0A7S2PBW9_9STRA4.280e-1164.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A225WBC5_9STRA4.280e-1167.44Dynein heavy chain (Fragment) n=1 Tax=Phytophthora... [more]
A0A833T1Z5_PHYIN4.280e-1167.44ATPase family associated domain-containing protein... [more]
A0A6G0PUQ9_9STRA4.290e-1167.44Dynein gamma chain, flagellar outer arm n=12 Tax=P... [more]
G4ZHE2_PHYSP5.860e-1167.44Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9070contigA-nodosum_M_contig9070:13180..13359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQB6
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons1
Evalue1.81e-19
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size180
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.9532645-CDS-A-nodosum_M_contig9070:13179..133591680870355.9532645-CDS-A-nodosum_M_contig9070:13179..13359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9070 13180..13359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9070.1.1prot_A-nodosum_M_contig9070.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9070 13180..13359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9070.1.1

>prot_A-nodosum_M_contig9070.1.1 ID=prot_A-nodosum_M_contig9070.1.1|Name=mRNA_A-nodosum_M_contig9070.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
MKVEDLRNASPATVSRAGIIYVADSNLDWQPVMERSLKKLPSSRVDVLRH
FFKWVLLFEL
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mRNA from alignment at A-nodosum_M_contig9070:13180..13359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9070.1.1 ID=mRNA_A-nodosum_M_contig9070.1.1|Name=mRNA_A-nodosum_M_contig9070.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig9070:13180..13359+ (Ascophyllum nodosum dioecious)
ATGAAGGTGGAGGATCTCCGAAACGCCTCTCCAGCAACGGTTTCACGCGC
TGGTATAATCTACGTCGCCGATAGTAATCTTGACTGGCAGCCGGTCATGG
AGCGCAGCCTCAAGAAGCTCCCTTCCTCCAGAGTGGATGTCCTGCGACAT
TTCTTCAAGTGGGTGTTGCTCTTCGAGCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9070:13180..13359+

>mRNA_A-nodosum_M_contig9070.1.1 ID=mRNA_A-nodosum_M_contig9070.1.1|Name=mRNA_A-nodosum_M_contig9070.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig9070:13180..13359+ (Ascophyllum nodosum dioecious)
ATGAAGGTGGAGGATCTCCGAAACGCCTCTCCAGCAACGGTTTCACGCGC
TGGTATAATCTACGTCGCCGATAGTAATCTTGACTGGCAGCCGGTCATGG
AGCGCAGCCTCAAGAAGCTCCCTTCCTCCAGAGTGGATGTCCTGCGACAT
TTCTTCAAGTGGGTGTTGCTCTTCGAGCTT
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