mRNA_A-nodosum_M_contig9069.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9069.2.1
Unique NamemRNA_A-nodosum_M_contig9069.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9069.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9069contigA-nodosum_M_contig9069:2871..3732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size216
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.6645658-CDS-A-nodosum_M_contig9069:2870..30231680870355.6645658-CDS-A-nodosum_M_contig9069:2870..3023Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9069 2871..3023 -
1680870355.684506-CDS-A-nodosum_M_contig9069:3671..37011680870355.684506-CDS-A-nodosum_M_contig9069:3671..3701Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9069 3672..3701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.7011538-UTR-A-nodosum_M_contig9069:3701..37321680870355.7011538-UTR-A-nodosum_M_contig9069:3701..3732Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9069 3702..3732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9069.2.1prot_A-nodosum_M_contig9069.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9069 2871..3701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9069.2.1

>prot_A-nodosum_M_contig9069.2.1 ID=prot_A-nodosum_M_contig9069.2.1|Name=mRNA_A-nodosum_M_contig9069.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MIATRPDGTRVTLRGGGTTTEGNGFLSRAFAAPARGNFGARVHGLRRSGG
HVGFTADGDLY
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mRNA from alignment at A-nodosum_M_contig9069:2871..3732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9069.2.1 ID=mRNA_A-nodosum_M_contig9069.2.1|Name=mRNA_A-nodosum_M_contig9069.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=862bp|location=Sequence derived from alignment at A-nodosum_M_contig9069:2871..3732- (Ascophyllum nodosum dioecious)
GCCAACGCTGGTGGTGGGGGGCGACGGCGAAATGATCGCCACACGCCCTG
ATGGGACTCGGGTAAGACGGACGTTGAAGCAAGTTATTATTATTGATATT
GTAGTCTTCACTACTATACTATACTAGACTATAGCAAGCAACCTCAAGAA
ATCAGTCGATCACTCAAGCAATCATTTGCACTTGGCTTTTTATATTGTTT
CTAAGACGTGCTGTGCTGAAGTATAAAATCATAAGCCAGTATCATCCGGA
ATCGGAGAGGGCTTGGTTTGCTACTTGCGACTGCAATTACTACAACTACG
ACAATACCAAGCAAGGCAGTGTAGGGGAGGGGGTGTTTTTACCGGTTGAC
GTGTTGATGGACTGCCTTGCCACCCTCCTGAAGAGGATTGATTGAATTGC
TACAATATTATAATATTGGTATTATACGAGCAACACATGGTGCTGTACTG
TAGTGTAGTGTAGTGTACATGTACTGTTAATATCAATAATATTAGAGCTA
TGATACAGCTGTACTGTAGCTCTATTAATAGTTGTGACAGGCTTGCTTCA
CCTGTTGTATACAGTACAGTAGCTATAGAGTCTATATAATATAGTGGTGG
TGTTTAGTAAGTCCCTACGAATGAAGAAATTTATCAACAGTAGAAAATCG
ACTGATTCTGATTCCGCTGCGCTCGCGTCGCACGCTCCTTTTTACGCTGG
ACATGTCAGGTTACTCTCCGGGGGGGGGGCACTACGACGGAGGGGAATGG
CTTCCTCTCCAGGGCGTTTGCTGCCCCGGCCCGAGGTAACTTCGGGGCGA
GGGTTCACGGTTTGCGCCGTAGTGGCGGGCACGTCGGGTTCACCGCGGAT
GGTGACCTGTAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9069:2871..3732-

>mRNA_A-nodosum_M_contig9069.2.1 ID=mRNA_A-nodosum_M_contig9069.2.1|Name=mRNA_A-nodosum_M_contig9069.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig9069:2871..3732- (Ascophyllum nodosum dioecious)
ATGATCGCCACACGCCCTGATGGGACTCGGGTTACTCTCCGGGGGGGGGG
CACTACGACGGAGGGGAATGGCTTCCTCTCCAGGGCGTTTGCTGCCCCGG
CCCGAGGTAACTTCGGGGCGAGGGTTCACGGTTTGCGCCGTAGTGGCGGG
CACGTCGGGTTCACCGCGGATGGTGACCTGTAC
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