mRNA_A-nodosum_M_contig906.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig906.3.1
Unique NamemRNA_A-nodosum_M_contig906.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: D7FR55_ECTSI (Cilia- and flagella-associated protein 206 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR55_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.500e-20
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAG 171
            ALQ+ANLR CVTKSQQTD SHFRR  +TQ+YLPR K T+TN+ SG+KPP+HVQYF G
Sbjct:  606 ALQVANLRNCVTKSQQTDGSHFRRVNDTQVYLPRAKHTQTNRNSGTKPPRHVQYFGG 662          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S2BG83_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG83_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.660e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            ALQ+ N+RKCVT  QQTD+SHFRRE ++Q+YLPR K T+T K S ++PP  +QY AG+
Sbjct:  160 ALQMTNIRKCVTTGQQTDNSHFRRENDSQVYLPRQKDTQTMKTSATQPPITIQYTAGL 217          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S3UX76_HETAK (Cilia- and flagella-associated protein 206 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX76_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-13
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            ALQ ANLRKC T SQQTDSS FRRE  TQ+Y PR K T+T    G+ PPQ V + AG+
Sbjct:  162 ALQYANLRKCATTSQQTDSSGFRRENETQVYPPREKDTQTTTERGTNPPQQVTFLAGL 219          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S2W3M6_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3M6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.860e-12
Identity = 30/58 (51.72%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            AL++ ++RKC T SQQTD+SHFRRE ++Q+YLPR+  ++T + +G++PP   QY AG+
Sbjct:  122 ALRMTSIRKCKTTSQQTDASHFRRENDSQVYLPRSNVSQTMREAGTQPPMVTQYLAGL 179          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S1G774_9STRA (Cilia- and flagella-associated protein 206 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G774_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.670e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            ALQLANL++  T S QTD+SHFRRE  +Q+YLPR K + T    G+ PP+  +Y AG+
Sbjct:   45 ALQLANLKQAKTVSGQTDASHFRRENESQVYLPRDKASNTGVSKGTNPPRVHRYIAGL 102          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A8K1C9C5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9C5_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 3.520e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            AL++ANLR C T S QT+ SHFRRE +TQ+YLP    T+T K  G+ PP+   YFAG+
Sbjct:  611 ALKIANLRHCKTVSCQTNLSHFRREVDTQVYLPTENTTQTGKERGTNPPRVTTYFAGL 668          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A812Z9P3_SYMMI (Cilia- and flagella-associated protein 206 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z9P3_SYMMI)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-10
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    4 LQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            L++ NL+ C T SQQTD+SHF+R+  TQ+YLPR K T+T K  G+ P     Y  G+
Sbjct:  144 LKVVNLKNCSTVSQQTDNSHFKRDSETQVYLPRAKGTQTRKDQGTNPASKSSYITGL 200          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S0HH10_9CRYP (Cilia- and flagella-associated protein 206 n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0HH10_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 4.270e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            ALQLANL    T S QT  SHFRRE  TQ+YLP++  T+T +  G+KP +H+QY +G+
Sbjct:  580 ALQLANLHTKKTSSTQTSMSHFRRENETQVYLPKSGVTQTARERGTKPVKHLQYISGL 637          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S4KF56_9EUKA (Cilia- and flagella-associated protein 206 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KF56_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 4.570e-10
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            AL LANLR+ VTKSQQTDSS FRRE  +Q+YLP+   T T   +G+  P    Y AG+
Sbjct:   54 ALHLANLRQKVTKSQQTDSSAFRREQESQVYLPKESTTMTGISTGTAAPISRNYIAGL 111          
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Match: A0A7S4HB93_GUITH (Cilia- and flagella-associated protein 206 n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HB93_GUITH)

HSP 1 Score: 62.4 bits (150), Expect = 7.980e-10
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQHVQYFAGV 174
            ALQLANL    T S QT+ SHFRRE  TQ+YLP++  T+T +  G+KP +H+QY +G+
Sbjct:  568 ALQLANLHTKKTCSTQTNMSHFRRENETQVYLPKSGVTQTARERGTKPVKHLQYISGL 625          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig906.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR55_ECTSI5.500e-2073.68Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S2BG83_9STRA1.660e-1560.34Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S3UX76_HETAK1.020e-1362.07Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S2W3M6_9STRA1.860e-1251.72Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S1G774_9STRA2.670e-1153.45Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A8K1C9C5_PYTOL3.520e-1155.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A812Z9P3_SYMMI1.970e-1049.12Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S0HH10_9CRYP4.270e-1053.45Cilia- and flagella-associated protein 206 n=2 Tax... [more]
A0A7S4KF56_9EUKA4.570e-1055.17Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S4HB93_GUITH7.980e-1053.45Cilia- and flagella-associated protein 206 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig906contigA-nodosum_M_contig906:303678..303866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FR55
Preferred nameCFAP206
PFAMsFAP206
Model size189
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001534,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0032991,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue9.02e-21
EggNOG OGs2CN2C@1|root,2QTGJ@2759|Eukaryota
Descriptioncilium movement
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.481994-CDS-A-nodosum_M_contig906:303677..3038661680870355.481994-CDS-A-nodosum_M_contig906:303677..303866Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 303678..303866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig906.3.1prot_A-nodosum_M_contig906.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig906 303678..303866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig906.3.1

>prot_A-nodosum_M_contig906.3.1 ID=prot_A-nodosum_M_contig906.3.1|Name=mRNA_A-nodosum_M_contig906.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
ALQLANLRKCVTKSQQTDSSHFRREFNTQIYLPRTKQTKTNKCSGSKPPQ
HVQYFAGVFLSH*
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mRNA from alignment at A-nodosum_M_contig906:303678..303866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig906.3.1 ID=mRNA_A-nodosum_M_contig906.3.1|Name=mRNA_A-nodosum_M_contig906.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig906:303678..303866+ (Ascophyllum nodosum dioecious)
GCCCTCCAGCTTGCAAATCTTCGTAAGTGCGTAACGAAATCACAACAGAC GGACTCATCGCACTTCAGGAGAGAATTCAACACACAGATTTATCTTCCGC GCACGAAGCAGACGAAGACCAACAAGTGCAGCGGGAGCAAGCCACCTCAG CATGTGCAATACTTCGCCGGTGTGTTTCTCTCTCATTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig906:303678..303866+

>mRNA_A-nodosum_M_contig906.3.1 ID=mRNA_A-nodosum_M_contig906.3.1|Name=mRNA_A-nodosum_M_contig906.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig906:303678..303866+ (Ascophyllum nodosum dioecious)
GCCCTCCAGCTTGCAAATCTTCGTAAGTGCGTAACGAAATCACAACAGAC
GGACTCATCGCACTTCAGGAGAGAATTCAACACACAGATTTATCTTCCGC
GCACGAAGCAGACGAAGACCAACAAGTGCAGCGGGAGCAAGCCACCTCAG
CATGTGCAATACTTCGCCGGTGTGTTTCTCTCTCATTAG
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