mRNA_A-nodosum_M_contig906.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig906.2.1
Unique NamemRNA_A-nodosum_M_contig906.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5L9V0_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V0_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.640e-36
Identity = 70/144 (48.61%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  L NT     +    + I   P  + L D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW+ G++PQ+WK ATI+V  K  D  EC NYRG+SLVAHAG+VL
Sbjct:   19 DGKVLRDPTFIRQRWARWFHKLFNTKSPTIDLHAADKIKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWLAGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVL 161          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.010e-36
Identity = 70/144 (48.61%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  LLNT     +    + +   P  + L D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ+WK ATI+V  K  D  EC NYRG+SLVAHAG+VL
Sbjct:   76 DGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVL 218          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5JTX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 5.550e-35
Identity = 68/143 (47.55%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRV 429
            DGK+LR    IR RW R+F +LLNT     +    + +   P  +   D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ WK ATI+V  K +D  EC NYRG+SLVAHAG+V
Sbjct:   34 DGKVLRDPTFIRQRWARWFHNLLNTKSPTIDLHAADKVKRWPTCVPPDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWQTGDVPQWWKDATIKVLFKQRDTMECGNYRGISLVAHAGKV 175          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5JLR4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.600e-35
Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  LLNT     +    + +   P  + L D P + E E+A+R +AN KA+GPD LPAEL+K    D    +L  FH I++ +W  G++PQ+WK ATI+V  K     EC NYRG+SLVAHAG+VL
Sbjct:   20 DGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRGPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFFLDGDQGLLREFHAIVVDMWQTGDVPQQWKDATIKVLFKRGGTMECGNYRGISLVAHAGKVL 163          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5JK70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK70_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.560e-34
Identity = 70/144 (48.61%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  LLNT     +    + +   P  + L D P + E E+A+R IA+ KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ+WK ATI+V  K  D  EC NYRG+SLVAHAG+VL
Sbjct:   19 DGKVLRDPTFIRQRWARWFHKLLNTKSTTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREIASRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVL 161          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5K901_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K901_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.160e-33
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  LLNT     +    + +   P+ ++L D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ+WK ATI+V  K  D  EC NYRG+SLVAHAG+VL
Sbjct:  428 DGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPMCVTLDDIPFLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVL 570          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5K9P7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P7_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.180e-33
Identity = 69/144 (47.92%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F +LLN  P   +    + +   P  + L D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ+WK ATI+V  K  D  EC NYRG+SLVAHAG++L
Sbjct:  188 DGKVLRDPTCIRQRWARWFHTLLNIKPPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKLL 330          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.830e-33
Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+L+    IR RW R+F  LLNT     +    + +   P  + L D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ+WK  TI+V  K +D  +C N+RG+SLVAHA +VL
Sbjct:   21 DGKVLQDPAFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHSIVVDVWQTGDVPQQWKDTTIKVLFKKRDTMKCGNWRGISLVAHASKVL 163          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5L5I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.560e-33
Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  LLNT     +    + +   P  + L D P + E E+A+R + N KA+GPD LPAEL+K  L D    +L  FH  ++ VW  G++P++WK ATI+V  K  D  EC NYRG+SLVAHAG+VL
Sbjct:  147 DGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMTNRKAVGPDDLPAELIKL-LLDGDQGLLREFHASLVDVWQTGDVPKQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVL 289          
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Match: A0A6H5JLW1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.740e-33
Identity = 68/144 (47.22%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDPPVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILAVWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL 432
            DGK+LR    IR RW R+F  L+NT     +    + +   P  + L D P + E E+A+R +AN KA+GPD LPAEL+K  L D    +L  FH I++ VW  G++PQ+WK ATI+V  K  D  EC NYRG+SLVAHA +VL
Sbjct:  116 DGKVLRDPTFIRQRWARWFHKLVNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHADKVL 258          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig906.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9V0_9PHAE4.640e-3648.61Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5K0F8_9PHAE8.010e-3648.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTX5_9PHAE5.550e-3547.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLR4_9PHAE5.600e-3546.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JK70_9PHAE1.560e-3448.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K901_9PHAE1.160e-3348.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9P7_9PHAE1.180e-3347.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQE0_9PHAE1.830e-3345.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5I5_9PHAE4.560e-3346.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLW1_9PHAE4.740e-3347.22Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig906contigA-nodosum_M_contig906:172120..172551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_025006-tr
PFAMsExo_endo_phos_2,RVT_1
Model size432
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00043,RC00070,RC02816
KEGG koko:K01908
KEGG ReactionR00926,R01354
KEGG Pathwayko00640,ko01100,map00640,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.76e-20
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3ANGE@33154|Opisthokonta,3C1UZ@33208|Metazoa,3DH8F@33213|Bilateria
EC6.2.1.17
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size432
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.44115-CDS-A-nodosum_M_contig906:172119..1725511680870355.44115-CDS-A-nodosum_M_contig906:172119..172551Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 172120..172551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig906.2.1prot_A-nodosum_M_contig906.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig906 172120..172551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig906.2.1

>prot_A-nodosum_M_contig906.2.1 ID=prot_A-nodosum_M_contig906.2.1|Name=mRNA_A-nodosum_M_contig906.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=144bp
DGKLLRKLEEIRARWRRYFASLLNTTPAAFNRTIIEGISPTPVALSLGDP
PVVNETEKALRSIANDKAMGPDGLPAELLKFGLSDSSHEILLAFHGIILA
VWMMGEIPQEWKYATIEVPHKMKDRTECRNYRGLSLVAHAGRVL
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mRNA from alignment at A-nodosum_M_contig906:172120..172551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig906.2.1 ID=mRNA_A-nodosum_M_contig906.2.1|Name=mRNA_A-nodosum_M_contig906.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at A-nodosum_M_contig906:172120..172551- (Ascophyllum nodosum dioecious)
GACGGAAAGCTCCTACGGAAGCTCGAAGAGATCCGTGCGAGGTGGAGGCG ATATTTTGCTTCCTTGCTCAACACGACCCCGGCCGCCTTCAATCGAACAA TTATCGAGGGCATATCGCCAACACCGGTAGCCCTGTCACTCGGAGACCCG CCGGTTGTGAATGAGACGGAAAAGGCCCTGAGGTCTATCGCCAATGACAA GGCTATGGGGCCGGATGGGCTGCCGGCGGAACTGCTCAAGTTTGGGCTTT CCGACAGTTCCCATGAAATCTTGCTTGCATTCCACGGCATCATCTTGGCT GTGTGGATGATGGGGGAAATACCGCAGGAGTGGAAATACGCAACCATTGA AGTTCCACACAAGATGAAGGATCGGACCGAGTGTAGAAACTACAGGGGCC TCTCTCTGGTGGCGCATGCTGGCAGAGTTCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig906:172120..172551-

>mRNA_A-nodosum_M_contig906.2.1 ID=mRNA_A-nodosum_M_contig906.2.1|Name=mRNA_A-nodosum_M_contig906.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at A-nodosum_M_contig906:172120..172551- (Ascophyllum nodosum dioecious)
GACGGAAAGCTCCTACGGAAGCTCGAAGAGATCCGTGCGAGGTGGAGGCG
ATATTTTGCTTCCTTGCTCAACACGACCCCGGCCGCCTTCAATCGAACAA
TTATCGAGGGCATATCGCCAACACCGGTAGCCCTGTCACTCGGAGACCCG
CCGGTTGTGAATGAGACGGAAAAGGCCCTGAGGTCTATCGCCAATGACAA
GGCTATGGGGCCGGATGGGCTGCCGGCGGAACTGCTCAAGTTTGGGCTTT
CCGACAGTTCCCATGAAATCTTGCTTGCATTCCACGGCATCATCTTGGCT
GTGTGGATGATGGGGGAAATACCGCAGGAGTGGAAATACGCAACCATTGA
AGTTCCACACAAGATGAAGGATCGGACCGAGTGTAGAAACTACAGGGGCC
TCTCTCTGGTGGCGCATGCTGGCAGAGTTCTC
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