mRNA_A-nodosum_M_contig9051.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9051.2.1
Unique NamemRNA_A-nodosum_M_contig9051.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: D7FQZ4_ECTSI (Acetohydroxy-acid reductoisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.730e-22
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCS TARLGSRKWAPRFDYILEQL YTA+D G+ V++ LISD  ENPVHDAI
Sbjct:  486 MVDNCSITARLGSRKWAPRFDYILEQLAYTAVDNGSAVDDSLISDFLENPVHDAI 540
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A835Z8S5_9STRA (Acetohydroxy-acid reductoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.190e-21
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCS TARLGSRKWAPRFDYILEQL YTA+D  AP+N+ LI D   NPVHDAI
Sbjct:  469 MVDNCSITARLGSRKWAPRFDYILEQLAYTAVDNDAPINDALIEDFLANPVHDAI 523
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: W7TPK9_9STRA (Acetohydroxy-acid reductoisomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPK9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.710e-21
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCS TARLGSRKWAPRFDYIL+QL YTA+D   PVN++LI D  +NPVHDAI
Sbjct:  485 MVDNCSITARLGSRKWAPRFDYILDQLAYTAVDNSVPVNQELIGDFLKNPVHDAI 539
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A7S0SWE2_9STRA (Acetohydroxy-acid reductoisomerase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.000e-20
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCSTTARLGSRKWAPRFDYILEQL Y A+D   PV+ KLI D  EN VH+A+
Sbjct:  312 MVDNCSTTARLGSRKWAPRFDYILEQLAYPALDNNVPVDSKLIKDFVENSVHEAV 366
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A6A2ZBT9_HIBSY (Acetohydroxy-acid reductoisomerase n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZBT9_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 7.180e-20
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCSTTARLGSRKWAPRFDYIL Q  + A+D GAP+N+ LIS  F +PVH+AI
Sbjct:  500 MVDNCSTTARLGSRKWAPRFDYILTQQAFVAVDAGAPINQDLISSFFSDPVHEAI 554
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A5N6MP87_9ASTR (Acetohydroxy-acid reductoisomerase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MP87_9ASTR)

HSP 1 Score: 90.5 bits (223), Expect = 7.300e-20
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCSTTARLGSRKWAPRFDYIL Q    A+D GAP+N+ LIS+ FE+PVH+A+
Sbjct:  991 MVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGAPLNQDLISNFFEDPVHEAV 1045
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A6V1P0P0_HETAK (Acetohydroxy-acid reductoisomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0P0_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 9.590e-20
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCS TARLGSRKWAPRFDYILEQL YTA+D   PVN++++ D   NPVH A+
Sbjct:  466 MVDNCSITARLGSRKWAPRFDYILEQLAYTAVDNEVPVNQQILDDFVNNPVHTAV 520
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A7N0T309_KALFE (Acetohydroxy-acid reductoisomerase n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A7N0T309_KALFE)

HSP 1 Score: 85.9 bits (211), Expect = 1.710e-19
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCSTTARLGSRKWAPRFDYIL Q    A+D GAP+N+ LIS    +PVH AI
Sbjct:  118 MVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISSFLSDPVHGAI 172
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A7R9WS80_9STRA (Acetohydroxy-acid reductoisomerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WS80_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.710e-19
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCS TA+ GSRKWAPRFDYIL+QL YTA+D GAPV+E LI+D  ++ VH A+
Sbjct:  106 MVDNCSFTAKTGSRKWAPRFDYILDQLAYTAVDNGAPVDETLIADFEKHTVHQAV 160
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BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Match: A0A7C9ANA7_OPUST (Acetohydroxy-acid reductoisomerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ANA7_OPUST)

HSP 1 Score: 89.4 bits (220), Expect = 1.840e-19
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENPVHDAI 165
            MVDNCSTTARLGSRKWAPRFDYIL Q    A+D GAP+N  LIS+ F +PVH+AI
Sbjct:  523 MVDNCSTTARLGSRKWAPRFDYILNQQALVAVDNGAPINRDLISNFFSDPVHEAI 577
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9051.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ4_ECTSI4.730e-2280.00Acetohydroxy-acid reductoisomerase n=2 Tax=Ectocar... [more]
A0A835Z8S5_9STRA1.190e-2178.18Acetohydroxy-acid reductoisomerase n=1 Tax=Tribone... [more]
W7TPK9_9STRA1.710e-2176.36Acetohydroxy-acid reductoisomerase n=2 Tax=Monodop... [more]
A0A7S0SWE2_9STRA3.000e-2074.55Acetohydroxy-acid reductoisomerase n=1 Tax=Chromul... [more]
A0A6A2ZBT9_HIBSY7.180e-2072.73Acetohydroxy-acid reductoisomerase n=3 Tax=Hibiscu... [more]
A0A5N6MP87_9ASTR7.300e-2072.73Acetohydroxy-acid reductoisomerase n=1 Tax=Mikania... [more]
A0A6V1P0P0_HETAK9.590e-2070.91Acetohydroxy-acid reductoisomerase n=1 Tax=Heteros... [more]
A0A7N0T309_KALFE1.710e-1970.91Acetohydroxy-acid reductoisomerase n=4 Tax=Pentape... [more]
A0A7R9WS80_9STRA1.710e-1969.09Acetohydroxy-acid reductoisomerase n=1 Tax=Crasped... [more]
A0A7C9ANA7_OPUST1.840e-1972.73Acetohydroxy-acid reductoisomerase n=1 Tax=Opuntia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9051contigA-nodosum_M_contig9051:13230..13394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQZ4
PFAMsIlvC,IlvN
Model size165
Max annot lvl2759|Eukaryota
KEGG rclassRC00726,RC00836,RC00837,RC01726
KEGG koko:K00053
KEGG ReactionR03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0030312,GO:0031967,GO:0031975,GO:0036094,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048046,GO:0050661,GO:0050662,GO:0050896,GO:0070402,GO:0071944,GO:0097159,GO:1901265,GO:1901363
Exons1
Evalue7.76e-23
EggNOG OGsCOG0059@1|root,2QQBF@2759|Eukaryota
EC1.1.1.86
Descriptionketol-acid reductoisomerase activity
Cds size165
COG categoryEH
BiGG ReactioniRC1080.CRv4_Au5_s10_g343_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.201955-CDS-A-nodosum_M_contig9051:13229..133941680870355.201955-CDS-A-nodosum_M_contig9051:13229..13394Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9051 13230..13394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9051.2.1prot_A-nodosum_M_contig9051.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9051 13230..13394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9051.2.1

>prot_A-nodosum_M_contig9051.2.1 ID=prot_A-nodosum_M_contig9051.2.1|Name=mRNA_A-nodosum_M_contig9051.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
MVDNCSTTARLGSRKWAPRFDYILEQLGYTAIDEGAPVNEKLISDLFENP
VHDAI
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mRNA from alignment at A-nodosum_M_contig9051:13230..13394-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9051.2.1 ID=mRNA_A-nodosum_M_contig9051.2.1|Name=mRNA_A-nodosum_M_contig9051.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig9051:13230..13394- (Ascophyllum nodosum dioecious)
ATGGTGGACAACTGCTCCACAACCGCGCGGTTGGGCTCCCGCAAGTGGGC
GCCCCGGTTCGACTACATCCTTGAGCAGCTAGGGTACACCGCTATCGACG
AGGGGGCACCGGTGAACGAGAAGCTTATTTCCGACTTGTTCGAAAACCCC
GTACACGATGCTATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9051:13230..13394-

>mRNA_A-nodosum_M_contig9051.2.1 ID=mRNA_A-nodosum_M_contig9051.2.1|Name=mRNA_A-nodosum_M_contig9051.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig9051:13230..13394- (Ascophyllum nodosum dioecious)
ATGGTGGACAACTGCTCCACAACCGCGCGGTTGGGCTCCCGCAAGTGGGC
GCCCCGGTTCGACTACATCCTTGAGCAGCTAGGGTACACCGCTATCGACG
AGGGGGCACCGGTGAACGAGAAGCTTATTTCCGACTTGTTCGAAAACCCC
GTACACGATGCTATC
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