mRNA_A-nodosum_M_contig905.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig905.15.1
Unique NamemRNA_A-nodosum_M_contig905.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig905.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig905contigA-nodosum_M_contig905:220491..221850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size392
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870353.6219385-CDS-A-nodosum_M_contig905:220491..2205961680870353.6219385-CDS-A-nodosum_M_contig905:220491..220596Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 220492..220596 -
1680870353.6372354-CDS-A-nodosum_M_contig905:221300..2215351680870353.6372354-CDS-A-nodosum_M_contig905:221300..221535Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 221301..221535 -
1680870353.6496787-CDS-A-nodosum_M_contig905:221800..2218501680870353.6496787-CDS-A-nodosum_M_contig905:221800..221850Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 221801..221850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig905.15.1prot_A-nodosum_M_contig905.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig905 220492..221850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig905.15.1

>prot_A-nodosum_M_contig905.15.1 ID=prot_A-nodosum_M_contig905.15.1|Name=mRNA_A-nodosum_M_contig905.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=130bp
GCGVYDSLRSPVVELVLKSGGDFQGVLSGMSAPPSSSSAGDVGQDSARVG
QLFGHPARRSGSASGTEGNGSDQSPSILLRDDTRVIRQTPGQKLTSFDHA
CYTIERQGNHLRLVTSTSSDPVHNSGSPPW
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mRNA from alignment at A-nodosum_M_contig905:220491..221850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig905.15.1 ID=mRNA_A-nodosum_M_contig905.15.1|Name=mRNA_A-nodosum_M_contig905.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1360bp|location=Sequence derived from alignment at A-nodosum_M_contig905:220491..221850- (Ascophyllum nodosum dioecious)
GGTTGCGGGGTCTACGACAGCTTGCGCAGCCCGGTGGTCGAGCTCGTTCT
GTGAGAGCAGTGGAAGGGATCGTGTACGCCAAAATGGATCAAATATATAT
ATATATATATATATATATATATATATGTGTGTGTGTGTGTATTTATATGT
ACACCAAGGAGGGGTACCCGTTGTGTCAGTCTCCAGTAGGCGTTTGAAGA
GATCCCGGTGGAATAATCGATGTCACCTGCGCGCGATGGTGGCTTTCCTT
ACGACCCCCGCGCTGCTTTGGGGCACCATCGGTGTATGTCATATGTCACA
CTTTTATTTCGGCAGGAAAAGTGGTGGAGATTTCCAGGGGGTACTCTCCG
GCATGTCAGCTCCTCCCTCGTCGTCTTCGGCAGGGGACGTTGGTCAGGAT
TCCGCACGAGTTGGGCAGCTATTTGGCCATCCTGCACGGAGGAGCGGATC
AGCCAGCGGTACCGAGGGCAACGGCAGTGACCAATCTCCCTCGATTCTTC
TCCGCGATGATACCCGTGTCATCCGACAGACACCCGGGCAGAAATTGACG
GTGAGAGCCCCCACGCCCCCCCGTTCTACCTCGGCTGCCTCCCGAACATC
GCTCGAACATCGCTCGAACATCGCTTGACCTCTGTTGGCAAATCTCACGT
TTTAAGGGCTATATGCTCCATAGCAAAATACCGCGAGCGGTAGATGGTGA
GTTGAAGGGGTCATCGTGTTGCAAGCACGATGCCCGGTGGCGTAGGTCGT
CTGACGTACGCTTGAGAACAACAGGAAATTCGACGAGCGGTGCGGGGTTC
GCGCTGGGAGGGATGTCCTCTCCCTCCCATGTATTATCATGTTTGTCACC
CTTTAAGTAGTCTGAGGGCAGAGCAAGCACATAGACATCAAATGGGTCGG
CGTCTCTCCAGTTGAAATTCCAGGGAAGATGTCTCCAAATACAAATAAGG
TGGAGATAGAAAGAAAGGTAAATAAAGGGGGAAATTGGGCACAGAGGGGG
GGGCTGCGATACTTTTTCTTTAATCGTGATGTTCCCTGGGATTGAGAAGT
AAACTCACTAAGATCGAGAAACAACGTGCAACGTCTTTCAATGTTCCCCC
CCCTGTCCACCCCTCACTACGACTGTCTCTATTCTCATTCCTGTCCTCGC
TCCCCCCTGCCCAGCTACTGCAGCTAACGACTCGATCTCGTTGCTACCCA
AATAACCGCGCCTCTCCTCGAACTTTACGTTACAAATTTGAATCACATCA
TCAGTCATTCGACCATGCGTGCTACACGATAGAAAGGCAAGGGAATCATC
TGCGGTTGGTGACATCAACCTCTTCTGACCCCGTGCACAACTCGGGCAGT
CCACCCTGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig905:220491..221850-

>mRNA_A-nodosum_M_contig905.15.1 ID=mRNA_A-nodosum_M_contig905.15.1|Name=mRNA_A-nodosum_M_contig905.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at A-nodosum_M_contig905:220491..221850- (Ascophyllum nodosum dioecious)
GGTTGCGGGGTCTACGACAGCTTGCGCAGCCCGGTGGTCGAGCTCGTTCT
GAAAAGTGGTGGAGATTTCCAGGGGGTACTCTCCGGCATGTCAGCTCCTC
CCTCGTCGTCTTCGGCAGGGGACGTTGGTCAGGATTCCGCACGAGTTGGG
CAGCTATTTGGCCATCCTGCACGGAGGAGCGGATCAGCCAGCGGTACCGA
GGGCAACGGCAGTGACCAATCTCCCTCGATTCTTCTCCGCGATGATACCC
GTGTCATCCGACAGACACCCGGGCAGAAATTGACGTCATTCGACCATGCG
TGCTACACGATAGAAAGGCAAGGGAATCATCTGCGGTTGGTGACATCAAC
CTCTTCTGACCCCGTGCACAACTCGGGCAGTCCACCCTGG
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