mRNA_A-nodosum_M_contig9.92.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9.92.1
Unique NamemRNA_A-nodosum_M_contig9.92.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.520e-25
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    7 EEMAEEDLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNVAKTFVDPSNGPA 258
            E++  +DL  E  +VR V+LS++ KKELG ARMP+ERICALLDPRRKDCSD+H +NG   LK SAIADVK+VAKTF +   G A
Sbjct:  222 EKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSA 305
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BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.030e-25
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    7 EEMAEEDLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNVAKTFVDPSNGPA 258
            E++  +DL  E  +VR V+LS++ KKELG ARMP+ERICALLDPRRKDCSD+H +NG   LK SAIADVK+VAKTF +   G A
Sbjct:  550 EKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSA 633
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BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.580e-12
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    4 TEEMAEEDLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNVAKTF----VDPSNGPAP 261
            TE++  EDLT EAQ VR+VLL  + +K +G A   VER+ ALLDPRRKD       NG E L+ +A AD+K    TF    V P+  PAP
Sbjct:  246 TEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTAESVPPTPAPAP 335
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BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.960e-9
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   25 DLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNV-AKTFVDPSNG-PAP 261
            DLTAEAQ V  VL  K+ +K +G+A++ VER+ AL+DPRRK    D   NG   L+  A  D+K V AK  V P+   PAP
Sbjct:  569 DLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAP 649
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BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.600e-8
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    4 TEEMAEEDLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNVAKTF----VDPSNGPAP 261
            T+EM   DL+ EAQ+V  VLL  + +K++  A   VER+ AL+DPRRK  + +   NG   L+  A  D+K V   F     +P++ PAP
Sbjct:  527 TDEMEVTDLSLEAQEVLEVLLEVMGEKQVEKAVQQVERLSALMDPRRKSLNGEQLENGSAHLRKRAEEDLKAVIAQFDVQPSEPASAPAP 616
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BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5JR38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR38_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 7.660e-7
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   25 DLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNV-AKTFVDPS 246
            DLT EA+ V  VLL  + +K +G+A++ VER+ A++DPRRK    D   NG   L+  A  D+K V AK  V PS
Sbjct:  213 DLTVEARCVLEVLLDVMREKGVGSAQVAVERLAAVMDPRRKLLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPS 287
[Close]
BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.040e-6
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 ETEEMAEEDLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDDHFINGGEPLKTSAIADVKNVAKTF-VDPSNGPAP 261
            E EEM   +L++ AQ V  VLL  + +K++G A   VER+ AL+DPRRK        NG   L+  A  D+K V   F V PS  PAP
Sbjct:  550 EPEEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFDVQPSE-PAP 636
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE5.520e-2563.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE8.030e-2563.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.580e-1248.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE3.960e-948.15Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KFJ9_9PHAE2.600e-840.00Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JR38_9PHAE7.660e-745.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.040e-643.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:1684617..1684877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size261
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870337.9723814-CDS-A-nodosum_M_contig9:1684616..16848651680870337.9723814-CDS-A-nodosum_M_contig9:1684616..1684865Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 1684617..1684865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870337.988586-UTR-A-nodosum_M_contig9:1684865..16848771680870337.988586-UTR-A-nodosum_M_contig9:1684865..1684877Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9 1684866..1684877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.92.1prot_A-nodosum_M_contig9.92.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9 1684617..1684865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9.92.1

>prot_A-nodosum_M_contig9.92.1 ID=prot_A-nodosum_M_contig9.92.1|Name=mRNA_A-nodosum_M_contig9.92.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MAEEDLTAEAQQVRRVLLSKLAKKELGTARMPVERICALLDPRRKDCSDD
HFINGGEPLKTSAIADVKNVAKTFVDPSNGPAP
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mRNA from alignment at A-nodosum_M_contig9:1684617..1684877-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9.92.1 ID=mRNA_A-nodosum_M_contig9.92.1|Name=mRNA_A-nodosum_M_contig9.92.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig9:1684617..1684877- (Ascophyllum nodosum dioecious)
GAGACGGAAGAGATGGCCGAGGAAGACCTCACCGCGGAGGCTCAACAAGT
GCGGAGAGTTCTGCTCTCGAAGTTGGCCAAGAAAGAGCTTGGAACGGCCA
GGATGCCTGTTGAGCGCATTTGCGCGCTTCTGGATCCGCGGCGCAAAGAT
TGTTCTGACGACCACTTCATCAACGGCGGCGAACCTCTCAAGACCTCCGC
CATCGCTGACGTGAAGAACGTCGCCAAGACCTTCGTGGACCCGTCTAATG
GGCCGGCTCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9:1684617..1684877-

>mRNA_A-nodosum_M_contig9.92.1 ID=mRNA_A-nodosum_M_contig9.92.1|Name=mRNA_A-nodosum_M_contig9.92.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9:1684617..1684877- (Ascophyllum nodosum dioecious)
ATGGCCGAGGAAGACCTCACCGCGGAGGCTCAACAAGTGCGGAGAGTTCT
GCTCTCGAAGTTGGCCAAGAAAGAGCTTGGAACGGCCAGGATGCCTGTTG
AGCGCATTTGCGCGCTTCTGGATCCGCGGCGCAAAGATTGTTCTGACGAC
CACTTCATCAACGGCGGCGAACCTCTCAAGACCTCCGCCATCGCTGACGT
GAAGAACGTCGCCAAGACCTTCGTGGACCCGTCTAATGGGCCGGCTCCT
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