mRNA_A-nodosum_M_contig9.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9.22.1
Unique NamemRNA_A-nodosum_M_contig9.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:453859..454284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size203
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.5131679-CDS-A-nodosum_M_contig9:453858..4540121680870331.5131679-CDS-A-nodosum_M_contig9:453858..454012Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 453859..454012 -
1680870331.525354-CDS-A-nodosum_M_contig9:454235..4542761680870331.525354-CDS-A-nodosum_M_contig9:454235..454276Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 454236..454276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.5380805-UTR-A-nodosum_M_contig9:454276..4542841680870331.5380805-UTR-A-nodosum_M_contig9:454276..454284Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9 454277..454284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.22.1prot_A-nodosum_M_contig9.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9 453859..454276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9.22.1

>prot_A-nodosum_M_contig9.22.1 ID=prot_A-nodosum_M_contig9.22.1|Name=mRNA_A-nodosum_M_contig9.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
MWSGVADGSIFRNTLWESLAFAFTDSDGPYADLKHMKAKKVTLEDAERAL
MPYLGDLQKPCEYL*
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mRNA from alignment at A-nodosum_M_contig9:453859..454284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9.22.1 ID=mRNA_A-nodosum_M_contig9.22.1|Name=mRNA_A-nodosum_M_contig9.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at A-nodosum_M_contig9:453859..454284- (Ascophyllum nodosum dioecious)
CGTCCAAAATGTGGAGTGGCGTCGCTGACGGAAGCATATTTAGGAACACG
TAAGGCTCAACTTTGATTAGGTGTACGATAGCGATATATTACACTGAACA
CGCGTGTTACACCACTTGGAGCTGCTTCGAAAGTCAAGAAAGAAATAATG
TTGAGAGGCAAGTGTGGCCGGAGGGACATGCCTCAGTCGTGTCTAGTATT
CCTCTCCTTTGGGTTTATACTACACGGCGCACCATTGAGAGCTAACGCGT
CGTACACTTCAAAATAAAACAGGTTGTGGGAGAGCCTCGCGTTTGCCTTC
ACTGACTCGGATGGCCCCTACGCCGACCTAAAGCACATGAAAGCAAAGAA
AGTCACCCTTGAAGACGCAGAACGAGCTTTGATGCCTTACCTTGGCGACC
TTCAGAAACCCTGTGAGTATTTATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9:453859..454284-

>mRNA_A-nodosum_M_contig9.22.1 ID=mRNA_A-nodosum_M_contig9.22.1|Name=mRNA_A-nodosum_M_contig9.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig9:453859..454284- (Ascophyllum nodosum dioecious)
ATGTGGAGTGGCGTCGCTGACGGAAGCATATTTAGGAACACGTTGTGGGA
GAGCCTCGCGTTTGCCTTCACTGACTCGGATGGCCCCTACGCCGACCTAA
AGCACATGAAAGCAAAGAAAGTCACCCTTGAAGACGCAGAACGAGCTTTG
ATGCCTTACCTTGGCGACCTTCAGAAACCCTGTGAGTATTTATAG
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