mRNA_A-nodosum_M_contig8989.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8989.1.1
Unique NamemRNA_A-nodosum_M_contig8989.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8989contigA-nodosum_M_contig8989:2693..8317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size525
Hectar predicted targeting categoryother localisation
Exons3
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.031896-CDS-A-nodosum_M_contig8989:2692..27491680870331.031896-CDS-A-nodosum_M_contig8989:2692..2749Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8989 2693..2749 +
1680870331.0485492-CDS-A-nodosum_M_contig8989:7573..76631680870331.0485492-CDS-A-nodosum_M_contig8989:7573..7663Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8989 7574..7663 +
1680870331.0602102-CDS-A-nodosum_M_contig8989:7940..83151680870331.0602102-CDS-A-nodosum_M_contig8989:7940..8315Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8989 7941..8315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8989.1.1prot_A-nodosum_M_contig8989.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8989 2693..8315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8989.1.1

>prot_A-nodosum_M_contig8989.1.1 ID=prot_A-nodosum_M_contig8989.1.1|Name=mRNA_A-nodosum_M_contig8989.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=174bp
WVERGDLKIVAKPEEDWKQVDEWNHLSQHDNFLLVEENHNTSTTNNSTEK
NREANREAELLRAEDEEAEEGRDPVERDEMARQDSKKPRAVVKEKKMLKK
PKEVERDNMCEAMRLMSEVHNSSIAAAMAETRSYGKQKEEWERNMMELEA
TESAPPSFKSRGSREHTSDSHWGT
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mRNA from alignment at A-nodosum_M_contig8989:2693..8317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8989.1.1 ID=mRNA_A-nodosum_M_contig8989.1.1|Name=mRNA_A-nodosum_M_contig8989.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5625bp|location=Sequence derived from alignment at A-nodosum_M_contig8989:2693..8317+ (Ascophyllum nodosum dioecious)
TGGGTTGAGCGTGGAGATCTGAAGATCGTCGCCAAACCCGAAGAAGATTG
GAAGCAGGTGCAGGCCTGTCTGTCGTGATGTACAGTACTAGACTACTGCT
TGCTGCTGTTTAAAGAAAAATCTGAATGCACCTAGGCCTTCTGAGCATCC
CCCAGTCAGGGGGGAAAAATGTGTTTAAGAAAAATCTGAACGCATCTAAA
CCTTCTGAGCATCCACCTCAAGTGGAAGAGTGTCTAAAGGTTGTTGTTGT
ACAGTTAGTTGTTGTACATTATTTACTACAGTATTATTACTAATATTAAC
AATACCAGGTATTAATAGTAGTCTAGTGCCGGTCGCCCCGCGGGTAGCTC
AGTCGGTAACCTCGTAACCTTCTGACACGTAGGGGCGGGAGTTCGAATCC
CGGTAACTGGGATTTTTTCTCACTAAAAAATAAAATAAAATAAATAAAAA
TATATCCCATCAACAAGTAGTCTAGAGAGAGGGGATATCTAGCTTCCTCT
TCATTTATTTTTTTACCTGTACTGGTATTCCTATTACTCTATGGTATATT
TTGTTTGTGACTCAGCTTCCGAGTTTGGAGCGATGGGCTCTACTTACATT
GGTTCCAGGTGCGTTCTGATTTTTCTTTAAACAACAACAACTACACCATC
CGATCCTAGAACCAATGTAACAAACTGAGCTGTATCCTAGCTTATCGTGC
CTTTTGTAATAATTGTTGTGCCTTGGCATCCCTGCATGGTAATTAATTTG
GAATGCACAGTATAACGGTGGGGTTATCCCCGATAATTTACTGTTGACCC
AAGCCCCTACTGTTGTGTGGGTCGATGGCACTTCTCCCCGGCATTTTGCT
GTTGGCCCAAGCCCCTATTGTTGTATGGTCCGAAAGTAACTATTCTTTAA
ATACGCATATAACAACTTATTATAGTTACTGGATAGCTCTAATCGTCCAG
TATCACGTCTATTACATCATCTATCTATACTACATGTAGATCCCCTTCAT
CGACACCCATCCGTTCCTAGACTGACGCAATGTAACAAAGCGAGTTGTAA
TCCAAGCATATATATCGTGTCTTTTGTTTTTGTTTTTGTTTGGTGTCCTT
GCATGGCGATCGATGTGTAATAATTGTACAGTAAGCATAACGATAGGTCT
CTCTCCCCGACAATTTACTGTTGACCCAAGCCCCTATTTTTGTATAGTTC
GATGACAACACTAATCCTTATGTTTTGTTATGTTTGGTGGCTCTGTATGG
CGATTAATATAAGTGTACAGTATAACGGTGGGCTTCTCCCCGACATTATA
CTGTTGACCCAAGGTTACTGCCATCGGGGAACTCGTTTAAATACCATGTA
GTGGCTTTGTCTTTACAGCCTATGTAACAGTATACGAAGTATTATTACTA
CCGTGTTTGATGATGTACTGGACTAGACTAGAACGTTTTTGTTTTTGCTG
TTTTTCTGATGTCCCTGCATAGCGATTATGTAAATAAATGTCCAGTATAA
CGGTGGGCTTCTCCCCGACATTAAACTGTCGACCCAATGTTACTATAATA
CAAAATATGCATACATAAGGGAACCCATTTGCAGCCTATGATCCCACCTA
AACGTTTTGACATTTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTATAT
AATAATAGTAGGCGCGTTCTGATTTATCTTTAAACACAGGAGGAAGGTCA
CACAGGATTTCTCATCCACCTCTCTTCTGCGGTGCGTACCTATATTTTTC
TCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGTGAAGTCGAA
TTTTGTGTATTAACGATTTTATCGTTCTCCACTTGTTGGGCATTTTTTTT
TTTTTTTTTAGTGAGAAAAAAATCCCGTTTATCGGGATCGAACTCACGTC
CAAACGTGTCAGAAGGTTACAAAGTTACTTCTGAGCTATCGGGGCTAATG
TGCTAGAAAATGATACGGTATCAGAAAACGGTTTTTTTGATATGGAACCA
AAAATTCACTTCTTATGTTATCTTTTTCTTTAATGACATTTGTGATAACA
TTTTAGGATAACCCCATCCGGTTAAAAAATCAGCTTTGCAGCCGGTACTT
TCAACATGCCCATTTCATACCAATAGTGGGTGTGGAAAAGAGAGGCGAAT
ATTAATTGGTCCATGGTGACCTACCAAGGCAGCACCCGTTCGGAACTACC
TTGAGGTTTACTGGCCCTATGCCGGCGGACTCTCGGCAGTGAACGCCATC
GGTACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGGCGTAT
GGCGGTTTTAAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGAATC
CCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGAC
GCGGGACGGGACGGCTGAACCCGTCTCGCGAGACCAAATTCTCAGGCACG
CACGGGGACAGGGGAATATTATTTTTCCCTATTCAGCTGACCACGAGCAG
GATTGGCAACCTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCA
TACATACATACATGCATACATACATACATCGTGCCCTCTCCCTCCGAAAC
CTGGTTTCGGAGTATGAGTGTGGGAGGGTCTTTCCGGCGGGTGTAGGGCC
GGGCTCACCCTCAAGAGATGCAGCCAACTGGCTGCCTTGGCAATTCAGCC
TGTCGGCTGAGACGCGGCGGCGGTATGGTTGGCTGAGGATGATGATGTTC
CCAGGTGCGCGCCTCTTCCGAGCCCCAATTTGGTGTCCTTCGGGAGGGTG
GCGGCACGCGAGAGGCAGGGAGCAGTATCGCGGAGAGCCTGGTAGTGCTC
TATCGGGTGGGTACGCACCAGATTCGGCGAAGGCGGAGGGAAGCTCGATC
GTCGACGAGCCAGGGGAGGGCTGAACCCCTGTGCGCGAGAATCACAGGCT
TGAACAGGGAGGTTTCTAAGGGAAAAGTTGATGTCTGACCACGGTCATTT
TTCTTTTTACGAGGGTCACAAGGAGCGGCGAACGGGCAAGATTCGTGGGG
CTTTTTCAAGGATGCACAGGGCTTTGGACGGCTGGATGCTGGCTCGCGCG
CCGGCTTCACTAGCTCAAGGCCTCCAAGAAACTTGGACAAGTTGATCGAA
AGTGGTTGGAGCGTAATTTTTCCGGTTTTTTGCTGAGAACGCTGGTCGTG
GGTAGGCGACAACATTCCGAGTCGATCGAGGTTGCTCACGATATGGAGTA
AGGAGGTTTGATGAACCGTTTTGATATTGGTCAGTGCCATTGCTTGTAGA
GCCGCATAACTTTTTGTCGCGATTTGGACCCCTGTTGGTCTGAGTAGCGG
GTTGTCACCATGTTGTGACCCGTTGACCTTTTTACCTCTTTGTGACCACC
ACTCCAAACTCGGAAGCTGAGTCACAAACAAAATATACTATATAGGAATA
CCAATACAGGTAAAAAACAAATGAAGAGGAAGCTATCCCCCCTCCATCGT
CGGGTTCCCGCCGACCAGGCCATCCCCACTCAACACCCTGGAGCTGCGAG
AAGGCAAAAACAAAATTAACCACGCACGTCATGCAAGATAGTATGTCCTA
AACAGTATCTCCCTGCGCCCCTACTATGCCGGGGAGCTCTTTGTCGGGTT
TCTCACCAACCAGGCAACTAAGCTGTAAGATAAGAACGGGTGCTTGGAAA
AATCCTGTTGATAATTGATTACCAGAAAAGCAGTTTTATGATATAATATT
TTTAACAGCATAATAAGAAGTGGCCTTCTACTTGCAATACGATACAGTAC
GCCTTGCCAATGCTTTCACGTACAGTACTACCGTATACTGTATGTAGGTT
CAAAGAAAAATCTGAACGCATCTATAGACCTTCTGAGCACCCCCCAGTCA
AAGGAAAAATATCAAAACGTTTATTAGGTGGGATCATAGGCTGCAATACA
AGACCTCTTGATGGCATTTGAACGGATTTCCCGATGGTACAGTAGTAACA
TTGACTCAACAGTATAATACCGGGGAGAAACTCTCCGTTATGCTGTACAC
TTTCCTTACACGGTGGCCAATCCCTCTCGTGGTCTGCTGAACAGGGAAAA
GGGAACAAAAAGAGAAAGTCTGGCAGCACCCCCCCCCCCCCTCCCCAGCT
GCTCGTTCGGAGGAAAAAAACAAAAAAACAAAAACATGACCCGTACAGAA
CATAACGAAGAGAATAAAAGAAGAGCAGATCAGATCAGATCGGATCGGAT
CTACCTGGTATATCATATCATATAATATATTTGTCCGCAGAAAGGGCATC
ACGTAACAACGCATCTACATGCTGCATGCTTAGGTCTAGACTGACTAGCC
TGAGTAATGTAGTACTGGTAGGTGCTACGTAGTTTTCCATCCGTTTCGCG
ACGTCCGTGCAGAATTCCTTCGACTCGCCAACTAGGCGAATTGTTGTCGT
CGCCTCATCCCCTAATAATATTATATAGTACTAATAATAGCTTCGTGGCT
TCGACTGGGCCAGTCAACGCCTTGACGCCGCGTCAGTATGTAACTGTTTG
TTGTTAAAAAAAAAATGTTGTAGATGGCCAACACCACCGCCAGCTGAGCT
GGTCGCTTTGACTTGAGTTGCTTGCTTACTGGGACGAATCCCAATTATTC
TTGGTGGCAAGTACCACGCCGCGTCAGTCTGTAGCTGTTTGTTGTTTAAA
TAAAAATTGTTGTAGATAGCCAACACCACCGCCAGCTGAGCTGGTCGCCT
TGACTCGAGTTGCTTGCTTACTGGGACGAATCCCAATTATTCTTGGTGGC
AAATACCGGTACCAGGCACATTTAAACGGAATCGATCGCTTCTCTTTTAT
TTATTTAAAAAAAATGCTTGTTCCGTGACAGGTTGATGAATGGAATCATC
TCAGTCAACACGACAACTTCCTCCTGGTGGAGGAAAACCACAACACCTCT
ACCACCAACAACTCTACTGAGGTACGATACAGACGGCACGCATTCATAGG
ATGTATTATGTTATATATTTGGAACAAGAAGTTCCGCACAGCAGCATCTT
GAGCTTCGTCGGTACAAAACCAATCGGCCACATCACTTGGGCGTAGCTAG
AATCAGCCTTGATAATATTAAAACTACTAATAGTACTGAAGTATATATTA
TACTTTTTATAACCCGCGAAATCTTCCCTTTTGACTGCTTCCCGCATCGT
TTGTGGTCGATGGTCGTCGGCCCCGTGATTCGCTTGCGTCGCCCACAGAA
AAACAGAGAGGCTAACCGCGAGGCCGAGCTCCTCCGGGCGGAAGATGAGG
AGGCAGAGGAGGGTAGGGACCCTGTAGAGCGCGACGAGATGGCTCGTCAG
GACAGTAAGAAGCCGAGAGCTGTGGTGAAGGAGAAGAAAATGCTCAAGAA
GCCGAAGGAAGTGGAGAGAGACAACATGTGTGAGGCGATGCGATTGATGT
CAGAGGTGCATAATAGCTCCATCGCCGCCGCCATGGCGGAAACCCGCTCA
TACGGTAAGCAAAAGGAGGAGTGGGAGCGAAATATGATGGAGCTGGAGGC
CACCGAGTCGGCTCCCCCGAGCTTCAAATCTCGTGGCTCAAGAGAGCATA
CTTCGGACAGCCACTGGGGAACTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8989:2693..8317+

>mRNA_A-nodosum_M_contig8989.1.1 ID=mRNA_A-nodosum_M_contig8989.1.1|Name=mRNA_A-nodosum_M_contig8989.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at A-nodosum_M_contig8989:2693..8317+ (Ascophyllum nodosum dioecious)
TGGGTTGAGCGTGGAGATCTGAAGATCGTCGCCAAACCCGAAGAAGATTG
GAAGCAGGTTGATGAATGGAATCATCTCAGTCAACACGACAACTTCCTCC
TGGTGGAGGAAAACCACAACACCTCTACCACCAACAACTCTACTGAGAAA
AACAGAGAGGCTAACCGCGAGGCCGAGCTCCTCCGGGCGGAAGATGAGGA
GGCAGAGGAGGGTAGGGACCCTGTAGAGCGCGACGAGATGGCTCGTCAGG
ACAGTAAGAAGCCGAGAGCTGTGGTGAAGGAGAAGAAAATGCTCAAGAAG
CCGAAGGAAGTGGAGAGAGACAACATGTGTGAGGCGATGCGATTGATGTC
AGAGGTGCATAATAGCTCCATCGCCGCCGCCATGGCGGAAACCCGCTCAT
ACGGTAAGCAAAAGGAGGAGTGGGAGCGAAATATGATGGAGCTGGAGGCC
ACCGAGTCGGCTCCCCCGAGCTTCAAATCTCGTGGCTCAAGAGAGCATAC
TTCGGACAGCCACTGGGGAACT
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