mRNA_A-nodosum_M_contig8986.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8986.1.1
Unique NamemRNA_A-nodosum_M_contig8986.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8986.1.1 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.810e-24
Identity = 97/274 (35.40%), Postives = 122/274 (44.53%), Query Frame = 1
Query:    1 GEDAVSWLQSECGPCSVEEALSTGNKMIAAGLIYSNTYGHGLENTRHFYKFADSVLEAS--------------------------------------RERRSSSTLPSWERRSRGR---------------------------------------------CRGQNGVFPR-----RAVGNGVINTASSCQVAAAAPGAGDLKGVTGAGDRVAIFEKAPQGPGRASSGGGTA-RNVSVRKLSREIEELKLTCAELERSRLDTERQTLAYASGFI 555
            GEDAVSWLQSECGPCSVEEAL  GNKM+AAGLIY  TYGH LEN+R FYKFA+SV+ AS                                      R  RS++ L     RS G                                              CRG+ G         R VG+GV++ + S   A AA  + D  G +G                R SSGG    +  + R+++RE+EELKL CAE+ERS++ TERQ  A+A+G +
Sbjct:  387 GEDAVSWLQSECGPCSVEEALWRGNKMVAAGLIYHCTYGHSLENSRLFYKFANSVVSASGGSRVSLSRQTSGERIGAKGSRFGAKGVGSGGGLTDGNRPYRSTNDLTGIVSRSSGEHNYDHHRYFGGAGERGSNGEGGGSSDASSEDSGSVVSVDNSGSAVCRGEAGPSSAMEGEGRGVGSGVVSLSKSVVAATAAAASSD--GRSGF---------------RESSGGHAGEKKATTRRIARELEELKLACAEMERSQMRTERQMQAFATGLL 643          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8986.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP0_ECTSI1.810e-2435.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8986contigA-nodosum_M_contig8986:177..10942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTP0
PFAMsDUF1769
Model size1827
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons9
Evalue2.95e-10
EggNOG OGs2CZJM@1|root,2SAPD@2759|Eukaryota
Cds size819
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8986.1.1prot_A-nodosum_M_contig8986.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8986 4791..10864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870330.8694594-UTR-A-nodosum_M_contig8986:176..8701680870330.8694594-UTR-A-nodosum_M_contig8986:176..870Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8986 177..870 -
1680870330.8805141-UTR-A-nodosum_M_contig8986:2628..26451680870330.8805141-UTR-A-nodosum_M_contig8986:2628..2645Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8986 2629..2645 -
1680870330.8922675-UTR-A-nodosum_M_contig8986:3848..40641680870330.8922675-UTR-A-nodosum_M_contig8986:3848..4064Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8986 3849..4064 -
1680870330.9020724-UTR-A-nodosum_M_contig8986:4787..47901680870330.9020724-UTR-A-nodosum_M_contig8986:4787..4790Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8986 4788..4790 -
1680870330.9990113-UTR-A-nodosum_M_contig8986:10864..109421680870330.9990113-UTR-A-nodosum_M_contig8986:10864..10942Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8986 10865..10942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870330.9171693-CDS-A-nodosum_M_contig8986:4790..50121680870330.9171693-CDS-A-nodosum_M_contig8986:4790..5012Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8986 4791..5012 -
1680870330.9306684-CDS-A-nodosum_M_contig8986:6174..62401680870330.9306684-CDS-A-nodosum_M_contig8986:6174..6240Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8986 6175..6240 -
1680870330.9441257-CDS-A-nodosum_M_contig8986:8392..84531680870330.9441257-CDS-A-nodosum_M_contig8986:8392..8453Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8986 8393..8453 -
1680870330.9637945-CDS-A-nodosum_M_contig8986:9322..94091680870330.9637945-CDS-A-nodosum_M_contig8986:9322..9409Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8986 9323..9409 -
1680870330.9771523-CDS-A-nodosum_M_contig8986:9996..103081680870330.9771523-CDS-A-nodosum_M_contig8986:9996..10308Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8986 9997..10308 -
1680870330.9890459-CDS-A-nodosum_M_contig8986:10793..108641680870330.9890459-CDS-A-nodosum_M_contig8986:10793..10864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8986 10794..10864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8986.1.1

>prot_A-nodosum_M_contig8986.1.1 ID=prot_A-nodosum_M_contig8986.1.1|Name=mRNA_A-nodosum_M_contig8986.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=273bp
MIAAGLIYSNTYGHGLENTRHFYKFADSVLEASRERRSSSTLPSWERRSR
GRCRGQNGVFPRRAVGNGVINTASSCQVAAAAPGAGDLKGVTGAGDRVAI
FEKAPQGPGRASSGGGTARNVSVRKLSREIEELKLTCAELERSRLDTERQ
TLAYASGFIQDRAVALMATLSVRGTLQAKETLFLPLMRQSAAAAAAAAAT
DSLREMDDRHELDGRRLGEGAEGPTSHGVLILDGAQAGGGDDEYGYLQRR
GAEVYGKFPPGGTRLWTVVSNV*
back to top

mRNA from alignment at A-nodosum_M_contig8986:177..10942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8986.1.1 ID=mRNA_A-nodosum_M_contig8986.1.1|Name=mRNA_A-nodosum_M_contig8986.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10766bp|location=Sequence derived from alignment at A-nodosum_M_contig8986:177..10942- (Ascophyllum nodosum dioecious)
GGCGAAGACGCGGTGTCGTGGCTCCAGTCGGAATGCGGCCCCTGCTCTGT GGAGGAAGCTTTATCGACGGGAAACAAGATGATCGCGGCGGGTCTGATTT ACAGCAACACCTACGGCCATGGCCTAGAGAACACAAGACATTTTTACAAG TGAGATACCGAGAGAGTTGTTAGATAACAATTGGCGTTTTTGCGAGTGAG ATGCCGAGTGAGGGAGTTGTTAGATAACAGTAGGCTTTTTTACGAGTGAG ATACAGAGAGGGAGGCAACTGTTGGAGAACGGCAGGCTTGTTATGAGTGA ATTACCGAGATGTGTATATACTAGGGTATCGTACCGTGTGAGCAGTGCAG GAAAGGTGAAGGATAGAGGGTGGTTGTGATTGTGGCGCAGCCACCTAAAC CGCGCGGTCCATCATTGCCGTGGTCCATCCCATGTTTTTGAGGGCGAATG AGGGGTGGGGGGGGGGTGAGCTGGGAACCGCTTTGGTGGAATGAATTAAC TTGGCACACGCAGCGACAGCAGGTGTAAAAGTATTCTGTTGTCTCTCCCC CTGTCTCTCCCCTTGTCTCTCCCCTTGTTAACTAACTCATCGTTATTTAT CATATTACCATTCCACCCCTATTTTCTTCCCAAGGTTCGCCGACTCCGTA CTTGAGGCCTCCAGAGAACGTCGGTCCTCCAGCACGCTGCCGTCCTGGGA ACGCCGAAGCCGAGGCCGGTGCCGAGGCCAAAATGGCGTCTTCCCGAGAA GGGCCGTCGGTAACGGAGTGATAAATACCGCTTCGAGTTGTCAAGTCGCC GCCGCCGCACCGGGCGCTGGAGATCTGAAGGGAGTTACGGGCGCGGGGGA CAGAGTAGCGATTTTCGAGAAGGCGCCGCAGGGCCCTGGGAGAGCCTCAT CTGGCGGTGGGACTGCAAGGAACGTTTCCGTCCGAAAGCTGTCGAGGTAC GTACTGCAATTTTGTTTTGGCTTCAAAAAGACCTATGATGAGTTTCGTCG ACGCCAAAATCGGGTCGTTTTGGGGACACGCTAGTTAAAAAAAGCCCCCG TAAAACCGCGGTCTAACAAGAACCAAGAATGTTTGTTCATCATTGCTACA AGTTTTTATACCGTAACAATAGCAATTGTTCGGTTTTGGTAAAGAGGTTT GGAGTGTCTTCCGTCAAAGGACAGACAGAAAAAGCCCGACGACTCCCTCA ACACCAAAGAGAGGCGCAAGAGCGCGATCCCCAAGTTCTCTCTCAGCGTC TGACATTCCTGCTCGGGGATGACTATAGCCCATGTCGATATCCTAATCCT GGCTGCTATTTTACTTCTTTGAAGACCCTGATCCATTCCTACCGAGTACC AGGGGTATTATGTAAGATCCATCATTCTGTAGTATTTTGAGACTTTGATC CCCTAGAGCTACATACTTGTTGTCATTAGAGCCTTGACTTGTTTTCCTTT TAAGGCCCCGATGCTCCCATTTGACACGCGCTGTTGTTGTCATTCAATCG CATCGATGTCTGGCATGCGACGGACTCTCTCAGGGAGATCGAGGAGCTGA AGCTCACTTGCGCCGAGCTGGAGCGGTCCCGGCTGGACACCGAGAGGCAG ACTCTGGCGTACGCTTCCGGGTGAGGCGGTCGAGTGAATAGTCTAAGATG AGACGCGTCGCAGCGTGCAGCAGGGGGTGTATGTATGTATGTATGATGTA TGGTCATCACATATAGGAAGAGTATGGTTCAACCCAGTGAGTTTGCCAAT CCTGCTGGTGGTCAGCTGAACAAGGAAAATGAATTTCCCTGTCCCTGTTC GCGCCCGAGAATTTGGTCTCGCGAGACGGGTTCGGCCGTCCCGTCTCGCG TCAGCCTGCTCATCTCCATGCTCAGGCTGAATCTGGTCTTACTTACGGGA TTCCTCCCGATTTCCGCGGCGGCGTCTATTTATTTATTTATACCGCCATA CGTCATCGGGTCAGTCCTGAGTTATGGGGTGACGCAATTGCGTACCGATG ACGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTGGTCCTCAAGGTA GTTCCAAACGAGTGCTGCCTTGGCAGGTCACCACCATCCAATTAATACGC GCCTCTCTTCCCCACGCCCACTATTGGTATGATGTAGTTATATTAATAGC ATGTTGAAAGTACCGGCGTGATGCAAGGGGGGGGTAATTAAACTGCACAA CCCGCGCAATCCCGCCCTGTTGTGCTATTAATAAAAGCATTTGCTCGTTG TTAGGGGGGGGGGAGGTGCATCTGTGTCTCGGTTTATCTATAGAATGACT CTTTTATTACATGCAGATAAGCTAGTATTTGGTGGCATGCTCATTAAAAA ACCGTCGACGTGTCGGGATGTGTATCTGAAGAAGAGTAAACGCCTTATTG TCTACATCTCCCCCCCCCCCTACCTTCTCTACCTATGTTCACGCCCGTTG TACCCCCTCGTCCAAAATGGCACGCAATGTTTGGGAAAGATTTATCCAGG ACCGTGCCGTCGCTCTGATGGCAACCCTCAGCGTCAGGGGCACTCTTCAG GTACCGACGTCATGACTACAACTGTTATAGTATATATGGTGTGCCCAACA CACTCGGCGCTTGTTAAAAAAAGTCACTTGGTTTGTCATGAAGCGTAACC GTTACTCACAATGAAGTACAAAGACCACGGACAAGTTCGTGTGTTAGGGT ACATTCGTATTGTTGTGGAGGTGTTTCTCCTATTCGCTGTCTGTAGTTCG TAAGCATACTTGAAAAGCACTGGCCACGCTATCGAGATACGGTGAGGCTT TTAGTGTGTGTAATTGTGTTTGTGTTTGTGTATGTGTATTTGTGTCGCCG ACTCTATTATGTACTGCGTACAGCCAGCCGTATACTATACTAGGCTGAAC CACAGTTGAACCTTTAGAGAAGCTCTTCTCTACATGGTCGGCAAGATTTT GATGCAATAATTTTCCTTCCCTGTGTTATTATGTCTTTTGGACTGTCTTT TGAGTGGAAGATAGAGAGGCTGGTGTTGAAGGAGTTAACTTGTGTCTCTG TTTTAGGGTAGGTTCCCGTTTGACACGTTCAAGAAGTCCAGGATGTAATT GCTTATAAGTGTTTGTATGAAGGAGAAGAGATCGTTTTGCGTCCTGAGGG TTTCGTAGAGAGCCGATTGCCGAACCACTCAACGACGCCTATGGCTTCCC ATCCTTTTTCCCTCGTCCCCCGGTCCCCTAGTCGTTGTACCACATACTTT CATTTCATTTTTCATGCCCAATGTTTAACACAGTAGAGATAAATATATAC ATAAATATGATATTGACATACACCGAAGTATTGGACATTTACTGAATACA GAAACCAAATAAATGACAGTATATGCTACACGAATGAATCGGTATTCCTG CCAGACTCTTTTGATTGGAACTTCGCACGGGTTGGCTCAACATTGGAAAC CTGCCCACATTTCTGCCACGCCTCTAAATGATATCTTCCCGCTCACCTCT CGCGGAGTAGCACTACCCATGGAAAAATATTACTAAAACACAGAGGATCA TTATCAAGCAAAGGTTCTTCTCGCCCGACAAAAAAACGCCTCTCACTATA GGACATCCCTGTAATCGACGCGCAGGCGAAAGAGACGCTTTTCCTGCCGC TGATGAGGCAATCAGCGGCAGCTTGCAGCTAGCTGCAGCAGCTAGAGCAG CTTACATTGGCTAGAGCAGCTACAGCAGCTCGAGTGCCGCTGGTCCGCGT GGCTTCGACCGACCAATTGAGACCGATAGCTCCATGAATGGACGATCGGC ACGAACTCGACGGCCGACGCCTTGGTGAAGGGGCGGGAGGGCCGACCAGT CACGGGGTGCTGATCTTGGATGGTGCCAAGCTGGCGGCGGTGACGACGAG TATGGGTACCTCAGAGGCGGAGCAGAAGTATACGGGAAGTTTCCTCCAGG CGACGCGTCTTGGACAGTGGTGTCAAATGTCGGACGGGTCCCTCGAAGAC GGTGAGCCTACTTTTTGGGTTTTGTTCGGACCAAACGCTCTTCTTGTCTT GATTTTTGTGTGTCGCTTTGCCTTGTCTAGATTTTTTTGCGACGTTTTGT TTGTCTTGATTTCTTTAATGTCTACTGCTTATTTGTGTAACTTTGTTTTT GTCTGTCTTGCTTTTTTGTGTAGCAAACGCCTTTTTTACCTTGCGTTCGT TTAGGCGTTCTCTGGCTTGCTTTTGCCCCATGGAGAGGTTTCTGATGGTC GATTTCGAGGCGCGGGCTGCATGGGAAGGCGCCAACTTTTGATAGATTTT GGATGGATGAGAAGCCCGTAGTTGGTGTGTTTCCTGTTCGTTGCATAGAT ATTGATATACAACGAAGTATTGGACATTTACTGAATACAGAAACCAAATA AATGGCAGTATATGTTATGCCGTATACGAATGAATCGGTATTTCTGCCAG ACTCTTTTGGTCGGAACTTCTCACGGGTTGGCCTCCAACATTGGAAACCC TGGCCATATTTTTGCCACGCCTCTAAACGATACAAATGTATCTTCTGTTT TTTCATGATATCTTCCCCGTCACCTCTCGCGGAGTAGCACTACCCATGGA AAAATATTACTAAAACACAGAGGATCATTATCAAGCAAAGGTTCTTCTCG CCCGACAAAAAAACGCCTCTCACTATAGGACATCCCTGTAATCGACGCGC AGGCGAAAGAGACGCTTTTCCTGCCGCTGATGAGGCAATCAGCGGCAGCT GCAGCTGCAGCTGCAGCAGCTAGAGCAGCTACATTGGCTAGAGCAGCTGC AGCAGCTCGAGCGCCGCTGGTCCGCGTGGCTCCCACCGACCAATTGAGAC CGATAGCCTCCCGCGAAATGGACGATCGGCACGAACTCGACGGCTGACGC CTGGTGAAGGGGCGAAGGGGCCGACCAGTCACGGGTGCTGATCTTGGATG GTGCACAAGCTGGCGGCGGTGACGACGAGTATGTGGGTACCTCAGAGTAA GTGGGAGCAGAAGTATACGGAAGTTTCACTCGGAGGCGGACGCGTCTTTT GGACGGTGGTGTCGGTCCCTCGAGGGACAGTTTGCCTACTTTTTGGGGGT TTTATTTAGGACAAACGCTCTTCTTGTCTTGATTTTTGTGTGTCGCTTAT CATTGTCTGATTTTTTTTGCGACGTTTTGTTTGTCTTGATTTTTTTATGT CTGCACGTTATTTTTGTCTTGCTTTTTTGTGTAACTTTTTTTTTTTGTCT GTTTGCTTTTTGTAGCAAACGCCTTTTTTACCTTTGCGTTCTTTTAGCGT TCTCTGGCTTGTTGCTCCCATGGAGGTTCTGATGGTCGATTTCGAGGCGC GGGCTGCGTAGAAACGCCAACTTTTATAGATTTTGGATGGATGAGAAGTC CGTAGTTGGTGTGTTTCCTGTTCGTTACATAGATATTGACATACACCGAA GTATTGGACATTTACTGAATACAGAAAACCAAATAAATGACACGTATATG TTATGCCGTATACGAAATGAAACGGTATTCTGCCAGACTCTTTTGGTCGG AACTTCGCACGGGTTGGCCTCCAATATTGAAACCCTAGCCACATTTTTGC CACGCCTCTAAACGATACAAATGTATCTTCTGTTTTTCCATGATATCTTC CCTGTCACCTCTCAGGAGTAGCACTACCCCATGGAAAATATTACTAAAAA CCTGAGAATCATTATCAAGCAAAGGTGCTTCTCATACGACAAAAAACGCC TCTCACTATAGGACATCCTATAATCGACGCGCAGGCGAAAGAGACGCTTT TCCTGCCGCTGATGAGGGCAATCAGCGGCAGCTGCAGCTGCAGCTGCAGC AGCCAGAGCACTACGTTGGCTAGAGCAGCTGCAGCAGTCGAGCGCCGCTG GTCCGCGTGGTCGTATACCGGACCACTGAGACCGATAGCCTCCGCGAAAT GGACGATCGGCACGAACTCGACGGCCGACGCCTTGGTGAAGGGGCGGAGG GGCCGACCAGTCACGGGGTGCTGATCTTGGATGGTGCCCAAGCTGGCGGC GGTGACGACGAGTATGGGTACCTCCAGAGGCGGGGAGCAGAAGTATACGG GAAGTTTCCTCCAGGCGGGACGCGTCTTTGGACGGTGGTGTCAAATGTCT GACGGGTCCCTCGAAGACGGTGAGCTTACTTTTTGGGTTTTGTTCGGACC AAACGCTCTTCTTGTCTTGATTTTTGTGTGTCGCTTTGCCTTGTCTAGAT TTTTTTGCGACGTTTTGTTTGTCTTGAATTTTTTATGTCTACTGCTTATT TTTTTCTTGCTTTTTTGTGTAACTTTTTTTTTGTCTGTCTTGCTTTTTTG TGTAGCAAACGCCTTTTTTACCTTGCGTTCTTTTAGGCGTTCTCTGGCTT GCTTTTGCCCCATGGAGAGGTTGTGATGGTCGATTTCGAGGCGCAGGCTG CATGGGAAGGCGCCAACTTTTGATAGATTTTGGATGGATGAGAAGTCCGT AGTTGGTGTGTTTCCTGTTCGTTGCATAGATATTGACATACACCGAAGTA TTGGACATTTACTGAATACAGAAACCAAATAAATGACAGTATATGTTATG CCGTATACGAATGAATCGGTATTTCTGCCAGACTCTTTTGGTCGGAACTT CGCACGGGTTGGCCTCCAACATTGGAAACCCTGGCCACATTTCTGCCACG CCTCTAAACGATACAAATGTATCTTTCTGTTTTTCCATGATATCTTCCCC GTCACTCGCGGAGTAGCACTACCCATGGAAAATATTACTAAAACACAGAG GATCATTATCAAGCAAAGGTTCTTCTCGCCCGACCAAAAACGCTCTCACT ATAGGACATCCCTGTAATCGACGCGCAGTAAGAAGGAGACGCTTTTCCTG CCGCTGATGAGGCAATCAGCGGCAGCTGCAGCTGCAGCCGCAGCAGCTAG AGCAGCTGCATTGGCTAGAGCAGCTGCAGCAGCTCGAGCGCCGCTGGTCC GCGTGGCTTCCGACCGACCAATTGAGACCGATAGCCTCCGCGAAATGGAC GATCGGCACGAACTGACGGCCGACGCCTTGGTGAAGGGGCGAGGGCCAAC CAGTCACGGGGTGCTGATCGTGGATGGTGCCCAAGCTGTCGGCGGTGACG ACGAGTATGGGTACCTCAGAGGCGGGAGCAGAAGTATACGGGAAGTTTCC TCCAGGCGGGACGCGTCTTTGGACGGTGGTGTCAAATGTCGGACGGGGTC CGTCGAGGACGGTGAGCCTACTTTTTGGGTTTTGTTCGGACCAAACGCTC TTCTTGTCTTGATTTTTGTGTGTCGCTTTGCCTTGTCTAGATTTTTTTGC GACGTTTTGTTTGTCTTGATTTTTTTAATGTCTACTGCTTATTTTTGTCT TGCTTTTTTGTATAACTTTGTTTTTGTCTGTCTTGCTTTTTTGTGTAGCG AACGCCTTTTTACCTTGGATCTGTTTAGGCATTCTCTGGCTTGCTTTTGC CCCATGGAGAGGTTCTGATGGTCGATTTCGAGGCGCGGGCTGCATGGGAA GGCGCCAACTTTTAATAGGTTTTGATGATGAGAAGCCCGTAGTTGGTGTG TTTCCTGTTCGTTGCTTGTGTCCCTGCGCGTTGTCGCGATATTCAAGGTT TTGGGAGGAGAGGGTTGGATGAGGAGAGGTTCAGTCTGATGCACGACGCC CCTCCTACCAAAGAGGAGCCGCCATCCCCTCATTCCTTTCCCTAGGAAGT CGCAAAACCGCCTCGTCGCAACGCACTCCCCCTCCTTTACATGGCATATA TACACGCGCCCACCCCGCGAGAGCGCTACATCCGTACAACCCGAAACACA AAATAATTTATGTTATGCCATCATACGGCACATTTTCTCTCACGGTGAAG AAGGCCATATCGCCACAAGCAGTAGCACAAAAAATCAAGACAAAAAGAGC GTTTGGTCCGAACAAGACCCAAAAAAGTAGGCTCACCGTCCTCAACGGGA CCTGCCAGACATTCGACACCACCGTGACTGGTCCGGTTGGAAGCCACGCG ACCAGCGGCGCTCTAGCTGCTGCAGCTGCTCTAGCTGCTGCCGCTGCCGT CGTTGCTGCTACTGCTTGTGGCGATATGGCCTTCTTCACCGTCCTCAACG GACCCGCCAGACATTCGACACCACCGTGACTGGTCCGGTTGGAAGCCACG CGACCAGAGAGCAGCGCCAGAGCAGTTGCAGCAGTTGGGAGCGAGCTGGT CCGCGTGGCTTCCAACCGGACCAGTCACGGTGGTGTCGAATGTCCAGCGG GTCCGTTGAGGACGGTGAGCCTACTTTTTGGTCTTGTTCGGACCAAACGC TCTTTTGTCTTGATTTTTGTGATTGCCATCTCTCGGAGACGACCGCGCCA CCCTGGGATACTTTTTTTCCCAATATATATTTCCGTGTATACATGTCTGT TTTTCTACCTTGTGACCACGGGCTGGATTTTGACAGGTAGTTCAGAGCCT AACGTATTGAACGAGAGGGTTTGCGGGGATTGAGAAAAACCGTCCTCAGC GAGCCGACGCTGGCACCGAGCCGCCCATGAAAGATCCCCAAGCAGAGCAG TCGTGGAGACCTGGACGAGGAGACTGCTGTTTGGAGAATCTTTCATGGAG CGGCGGGTGCCAGCGTCGGCTCGAAAAGTTCTTTCCAATCCCCTGCAACC TTTAAGGCCTACTCGTTCAAGCCTGGTGAGTGATACGATATTATTACTAT GATAATACGTTAGGCTCTAGACTACTGTATTTCAATGTGAACCATTTCAA GTACTATATTTCAATGCCAGTAGATCTACAAAGCGCGTGAAGATCGTGTA TGTATGTAATAATGTATGGTCACCACATATAGCAAGGAGTATGGATCAAC CGGGTAAGGGTTGCTAATCCTGCTCGCGGTCAGATGAACAGGGAAAATGA ACGTTTCCCTGTCCGCGTTCGCGCCTGAAAGTTTGGTCTCGCGAAACGGG TTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGA ATCTGATGCTTGCCTACGGGATTCCTCCCGAGTTCCGCGGCGGCGACCCT TTATTTATTTTTACCGCCAAACGCCATCGGGTCAGTCCCGAGTTTATCGA GTCACGCAATTGCGTACCGATGGCGTTCACCGCCGAGAGTCCGCCGGCAC AGGGCCAGTATAGAGCTAGTACAAATCGTGCAACATTGGAGCTGCAACAC TTGGCAGTTGTTAAAAACTAATTCGTTGCTGCTATTGCGACGTAAGGATA TACAGTATCCTGCCAAGTTTTTCGTTCGAAGGATGTATCCCACAAGCCTG CTGCCACATACTGCACTTTCCAAGGCCTGCTGTCTTTTGTCTTTGTGAAC ATGTCTATTAACTTGTCTATTATATTGTATTAATAGTATATGAATCCTTT CTAGGAAGGTGGGGGGGATCTTGGCGTTTGCAGCATTCGTGCTGACTGGG GCACTATAGTATAGTATAGTATTGTCGGGGAGGGGGTTCCATCCATTAAA GGCGGGGGGACGGGGTGCCGGATAAAAATAGTCTTTTCGATGATTAAGGT GTCTAATCTACAGTATCTAGTCTCGGGCGCTTTTTTTTTCTTTTCTTTTT TCTAACTCTTCCTTTTTTCCCCCCTGCGCTCGTCGGCAACCTGACAATTT AGCTTCGCGAGACAGGTTCTCCCGTCCCGCCCCGCTGATAACCTCGCCGG GTTTTGCATTGAAAAATATATAGGGTACTTTTGACGGTTACTATTTACAT CCGAAAAAATTGAAAACTCTCAAGGGTTGTACACACACACACGCCAATGC AACGTAACAATGAAAGCGAAGGAAAGCTTCTTGCGGACTTGTCGGTCGGA ATGGAGCGTATTTGCTCCGCGCACGTGTGGTATAAGAGGGCACATTCTGT CCTCAACGCTTCTACCCCCCCCCCCCCCAAATCCTCCATCCTGTTATCAC TAACAAAATTATTGTACTGTGTACTGTACTGCCCTCTTCACGCTTCCTTT GGGTGTGTTGCGAGTCGCACAGATCATGGAGCGGGATCTGGCAACCAAGG AGCTGTTGGAGATTTGGCACGCTGCGTTGCTGAAAAACTCGGAAATTGAT CGGTCGCTTTTTACATTTTTGCTCGACCGCCAAGCATCATTCAACGGAAT GGGCAGGTTACGTCAGAGTCGCTGATTCAGTACCTGTTATGACGTAGTAT TAATTAATACTGCTGCTACTTGTGCGTTTGAGTGTATGGTTGCGATCCGG GGGAGGGTATCAGATGCCTCGCTGCTGGCTCACTCTATCGATGCCCTTCG CCTATCTTTCCTGGCATGTGTTTGTGTTATTGTTGCTCTTTTTTGTCTTG TTTTTTATGCTGCTTGTTGAGCTTTGTTGATGTTCCCTGATCTTTTCCTG TCCGGCAGACAACGTACAGTACCGATTGGCAACCACGTATGTCACTGGGA TTGGTTAGAAGCCCGATCGGTTAATGTGACGAACACTCCCATGATGTCGA TTTGAATGCCGCAGAAGAGTAGCGGGTGATTTTTTCGCGTTGCTATTCCG GTGCGCTTTGGTCTCAACGCCTGACTGTCCGCTGCCCCCAGTGACTGGTG GGGTATGCTTAAAGTGACTCGCGTATGGTATCGGCAGTCGTGTGGTCTTG ACACTTGGTCTGATTTGCTTGCTTATTTATTTGTCTCTCGGATATGCTTG GCGGTCTTTTTGCTTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8986:177..10942-

>mRNA_A-nodosum_M_contig8986.1.1 ID=mRNA_A-nodosum_M_contig8986.1.1|Name=mRNA_A-nodosum_M_contig8986.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=819bp|location=Sequence derived from alignment at A-nodosum_M_contig8986:177..10942- (Ascophyllum nodosum dioecious)
ATGATCGCGGCGGGTCTGATTTACAGCAACACCTACGGCCATGGCCTAGA
GAACACAAGACATTTTTACAAGTTCGCCGACTCCGTACTTGAGGCCTCCA
GAGAACGTCGGTCCTCCAGCACGCTGCCGTCCTGGGAACGCCGAAGCCGA
GGCCGGTGCCGAGGCCAAAATGGCGTCTTCCCGAGAAGGGCCGTCGGTAA
CGGAGTGATAAATACCGCTTCGAGTTGTCAAGTCGCCGCCGCCGCACCGG
GCGCTGGAGATCTGAAGGGAGTTACGGGCGCGGGGGACAGAGTAGCGATT
TTCGAGAAGGCGCCGCAGGGCCCTGGGAGAGCCTCATCTGGCGGTGGGAC
TGCAAGGAACGTTTCCGTCCGAAAGCTGTCGAGGGAGATCGAGGAGCTGA
AGCTCACTTGCGCCGAGCTGGAGCGGTCCCGGCTGGACACCGAGAGGCAG
ACTCTGGCGTACGCTTCCGGATTTATCCAGGACCGTGCCGTCGCTCTGAT
GGCAACCCTCAGCGTCAGGGGCACTCTTCAGGCGAAAGAGACGCTTTTCC
TGCCGCTGATGAGGCAATCAGCGGCAGCTGCAGCTGCAGCTGCAGCAACC
GATAGCCTCCGCGAAATGGACGATCGGCACGAACTCGACGGCCGACGCCT
TGGTGAAGGGGCGGAGGGGCCGACCAGTCACGGGGTGCTGATCTTGGATG
GTGCCCAAGCTGGCGGCGGTGACGACGAGTATGGGTACCTCCAGAGGCGG
GGAGCAGAAGTATACGGGAAGTTTCCTCCAGGCGGGACGCGTCTTTGGAC
GGTGGTGTCAAATGTCTGA
back to top