mRNA_A-nodosum_M_contig895.34.5 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig895.34.5 vs. uniprot
Match: D7FTP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP2_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 8.010e-130 Identity = 228/439 (51.94%), Postives = 300/439 (68.34%), Query Frame = 1
Query: 172 VTALRQRRRYIITQLYNVRQSIQATEDEVLSAQDLPELTTKVLAPKDTVDESNCESFVCAVDWNTGRDDGPGPKPLTDRLAAERARALLRKFDNDGDGCLSFEEFRAYLMWFKRDTGEVGERLATNREFWNAFVVDQAGPTAE----GVTSSDGSLTETGFIAHRRMIEHEHPLELDLLSLGLNVLPEYLQNWQRAKDAFDRIYFESVLASEQHDGRTAKGNHIDSYVECEGLVETEQAQLLLADAGEIMTKLRLEEEMSQAKWRARMLHQLFEIKQKRNRLAQAQAFSSHAKVHDAERIHRHTWLAWYMSGRAKQE-DASWIEKILVRVKTAMYRSLRSLSKLIELSKGVLESFTQRGLISSA---------------------LHAPLKDSESRVAFRIAVGDAEDTGQGFSLALKFFHKINNASTDYPVEPLRPGV 1410
+ ALR+RR YII QL+NV QSI+ TE EVL+ + +PE++ + LAP+DTVDES SF+ AV+W+ G DDGPGPKPLTDR A +RARALLR FD DGDGCLSF+EFRAYL+ RD G++GERL TNREFW ++V DQAGP A G S DG LT++GF+ HRRM+E +HPLE+DLL++GL++LPE LQ W R K+AFDRI E V A+ + R AK S + +G V+ +AQLLLADAGE+M+KLR+EEE++ A A+++ ++ E ++KRNRLA QA S A V+DA+RI+R WL+W+MSGRAK+E + SW+EK L+R+KT +YR R+ L+ + VLE Q+GLIS L AP K S++R R A+GDAED G GFS++L F HK N + P L G+
Sbjct: 48 IAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDR-AMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGAVSFDGCLTQSGFVGHRRMVEADHPLEVDLLTMGLDLLPESLQRWLRVKNAFDRIDAEGVSAATERGERGAK-----SRGDYDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSRSA-VNDAQRIYRTAWLSWFMSGRAKEERETSWLEKNLIRLKTRLYRGFRACYSLVGRPRRVLEELVQQGLISCTSLILNPTGRFDDVTLYGVAANLLAPFKGSDARATLRAAIGDAEDDGSGFSVSLNFLHKGNGVWEERPGGELGGGL 479
BLAST of mRNA_A-nodosum_M_contig895.34.5 vs. uniprot
Match: D7FTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP1_ECTSI) HSP 1 Score: 195 bits (495), Expect = 4.410e-52 Identity = 138/345 (40.00%), Postives = 170/345 (49.28%), Query Frame = 1
Query: 1723 QILESKRTVLNDRFKVSLTGEACFCESLISKLLEEVIASVMGDIIQASADSTEHDSERFVRRIRTEDAVPGIEHPL---SENPACSVHELRADGTLFYGNQQRQSSKTTLSLATGGTSAQL----TPPRLGLFMSSSMMMPHQDTKAMRWLDWMWSFAAKLRGTRELTFDLEAATPLEFLESSWARAYLPASWRSEEMFTTPGYVAEWFTSWKACLLSHASRLRKSAREHIEQKLQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQHNKEVLALAEDSARRLKEAKDIQMEEYAELDEAFRACLGCLIGIRELRIQSGPNVLVVEAQGLDILDALSSTTDYDG 2736
+ILES+ VL+DR KVS++ E CFC L+SKLLEE +AS++ ++ QA ADS EHD R R RT+ PG+ HPL A SV E R G G+ K+ S GGTSA++ TP R L QDTK +WLD MW+FAAKLRG + DLEA++PLEFLESSWARA + E + +K E++ RRL+EAKD QMEEYAEL++A AC L+G RELRIQSG NVLV E QGLDILDALS+ G
Sbjct: 4 EILESRTLVLDDRLKVSISAEGCFCGPLVSKLLEETLASMIDNVRQAVADSAEHDVGRVEREARTQKNAPGMRHPLVVPKRRVAGSVREGRGAGLPGGGSGGVGQKKSESS---GGTSAEMAAIITPTRGRLLTERGKRF--QDTKTSKWLDRMWAFAAKLRGAKAFALDLEASSPLEFLESSWARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKALLAEAMGEK------------------------------------------EEETVRRLREAKDKQMEEYAELEDALLACTKYLLGPRELRIQSGHNVLVAEFQGLDILDALSAARHPGG 301
BLAST of mRNA_A-nodosum_M_contig895.34.5 vs. uniprot
Match: A0A7S2SK77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK77_9STRA) HSP 1 Score: 125 bits (314), Expect = 3.020e-26 Identity = 128/564 (22.70%), Postives = 225/564 (39.89%), Query Frame = 1
Query: 1126 EKILVRVKTAMYRSLRSLSKLIELSKGVLESFTQRGLISSALHAPLKDSESRVAFRIAVGDAEDT-GQGFSLALKFFHKINNASTDYPVEPLRPGVGMVVTLDLEAKDEMPEGALNKTAEALEKVTRSHLLGELKRSNIFHSMRASVLTLP-DRSKIIRVTLCWRAQANIDFVFRQMKLGLRPTDLVRELNVTFFCPLELYQILESKRTVLNDRFKVSLTGEACFCESLISKLLEEVIASVMGDIIQASADSTEHDSERFVRRIRTEDAV----PGIEHPLSENPACSVHELRADGTLFYGNQQRQSSKTTLSLATGGTSAQLTPPRLGLFMSSSMMMPHQDTKAMRWLDWMWSFAAKLRGTRELTFDLEAATPLE-FLESSWARAYLPASWRSEEMFTTPG-----------YVAEWFTSWKACLLSHASRLRKSAREHIEQKLQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQ-----HNKEVLALAEDSARRLKEAKDIQMEEYAELDEAFRACLGCLIGIRELRIQSGPNVLVVEAQGLDILDALSSTTDYDGLDAA 2748
E ++ K+ + R+ R ++ G L S ++RGLI +L A LK R +G E GFS+ L K+ N++ + + G+G +D + E+P+ A+ + A ALE V H EL+R F R T D ++RV W+ +++IDFV R++ +G++ +D++ +L +T L L ILE ++T++++ V TG L++KLLEE++ S A + E + RT+ V G+ L + S+ L+ T +Q + + + Q + +RWL + T+ T D + E L++ W++ + E FTTPG Y++ ACL H +R ++ RE +L+ + + ++ RL K + EE +L + C L+ + +++QSG N L + QGLD+ + L ++ +DAA
Sbjct: 34 EAAAIQFKSIIRRAYRMGLHGLKSVMGTLNSVSERGLIVDSLVARLKQEVGRYGMEFRLGADEGVLDAGFSMTLSL-RKLANSTAGFAELGMPGGLGTAFLVDFLIRSEVPDKAVTRAASALEAVLNEHCKYELERIPSFKLFRVFKHTHEADHVPVLRVAFAWKPESSIDFVLRRLNIGVKFSDILLDLTMTLQSSLGLTDILEGRKTIIDESLNVQATGNLVCARRLVAKLLEEIVRSPFEANAAAEIELAEQRRDYAAAFQRTKQVVLEKFKGVSQALKDIKEVSITGLQEPPTSQTSAEQEHTKQR------------------------GNWVQRQTWRMLRWL----------QSTKSCTLDFSYTSASEAVLKNPWSQGWFADL--GLEDFTTPGAIYHRWIAFQQYLSSQIQESLACLRKHKTRRKRWDREEEAARLKESASMTQRQRREKELAEEKKRMAARLLSMGLEVTADLEEDDTSGISPVELMRLLVTKQFKTEE--KLQGLYGDCWAALVAVHGIQVQSGENRLTLSFQGLDLFELLPEP-EHRTVDAA 557
BLAST of mRNA_A-nodosum_M_contig895.34.5 vs. uniprot
Match: A0A6U1BVW4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BVW4_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.240e-13 Identity = 54/171 (31.58%), Postives = 86/171 (50.29%), Query Frame = 1
Query: 415 AERARALLRKFDNDGDGCLSFEEFRAYLMWFKRDTGEVGERLATNREFWNAFVVDQAGPTAEGVTSSDGSLTETGFIAHRRMIEHEHPLELDLLSLGLNVLPEYLQNWQRAKDAFDRIYFESVLASEQHDGRTAKGNHIDSYVECEGLVETEQAQLLLADAGEIMTKLRLE 927
A++ L +F + G +++ +FR YL +R E + + E W +++ D G T G LT F+A+R IE ++PLE DLLS+GL +LP+ L W++ + AFDR+ E + E+ A +I ++ CE QL D GEIM+ + E
Sbjct: 80 ADKVHELYERFCSV-PGRMTYFDFRGYLHALRR-LDEFDPHIIDSEEAWRSYMTDMFG------TDEAGGLTPGQFLAYREWIESQYPLEADLLSIGLPLLPDTLIAWKQCEAAFDRLADEGITEEEKFMLLRAGEEYISNFPRCE-------FQLFAYDNGEIMSDMECE 235 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig895.34.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig895.34.5 >prot_A-nodosum_M_contig895.34.5 ID=prot_A-nodosum_M_contig895.34.5|Name=mRNA_A-nodosum_M_contig895.34.5|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=920bp KSPLRTKNQQEDTLTRTAVTTKTATWVDFDPGESGVGDDIDGCDEQVVTSback to top mRNA from alignment at A-nodosum_M_contig895:79404..165578+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig895.34.5 ID=mRNA_A-nodosum_M_contig895.34.5|Name=mRNA_A-nodosum_M_contig895.34.5|organism=Ascophyllum nodosum dioecious|type=mRNA|length=86175bp|location=Sequence derived from alignment at A-nodosum_M_contig895:79404..165578+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig895:79404..165578+ >mRNA_A-nodosum_M_contig895.34.5 ID=mRNA_A-nodosum_M_contig895.34.5|Name=mRNA_A-nodosum_M_contig895.34.5|organism=Ascophyllum nodosum dioecious|type=CDS|length=2760bp|location=Sequence derived from alignment at A-nodosum_M_contig895:79404..165578+ (Ascophyllum nodosum dioecious)back to top |