mRNA_A-nodosum_M_contig893.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig893.15.1
Unique NamemRNA_A-nodosum_M_contig893.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig893.15.1 vs. uniprot
Match: D8LRY9_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY9_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.650e-40
Identity = 133/370 (35.95%), Postives = 171/370 (46.22%), Query Frame = 3 
Query:  390 LVEESKLHAADEVAACVWLAGDMVRESMFTRVTDTWEIMADEVPLIAE-----------IGRNFSEVVAGRLEATCLAVEAEMRVADEVAATRGETALVEPD---WRGSNILRGDVLTRLETFRIYNTREAPAGEPGFSPAEFRQ----DLVQRLRATREAVVDRMNSIHKTVATAAGVHGLQFWPAISEDEA---LMGIDYVAQCVLEKLKAAYLAAEGVRDPTGRVPVGNIRERLLEKKHETQAAAAKELPKGHVHRKNSSRVDGVTSADNSAEMAASTR-------------RPPRGASANTKRRRSGSGVRRCKNKECSLHPHFGFTRPEYCSHHKLPGMFNVKGRRCIDPECTRTPVYGKNGDPH 1397
            + EE +L AAD+VA C+WLAGD +RE +  R+ D W  +  E+   A+             ++F+EV+  RL+ATC AVEAE++ A    A   +TA   P    WRGS  LRGDVL+RLE +R  N  E   G PG     F      D  +R  A            H+      G         ++ED A     G++   +     +K+  L   G  +P  R                  AAA       H  R                 +A + R                       KR+RSG+G RRCK++ C LHPHFG TRPEYCS HKLPGMFNVKGRRCI PECTRTPVYG++GDPH
Sbjct:  328 VTEEERLQAADDVARCIWLAGDELREILLARLFDLWSTVEAEMVSYADGTAAASGGGGAPRKSFNEVLVERLQATCQAVEAELKAAK---ARGDDTAFCNPPQHHWRGSGALRGDVLSRLEAYRREN--EGNCGMPGSGHGRFSSLNCIDDFERANALARGGXXXXXR-HRXXHAGGG---------LAEDGAGDLRQGLETAIEVTRGAVKSELLMF-GDDEPAQR-----------------NAAA-------HPARSXXXXXXXXXXXXXXXXVAPTARGGGPXXXXXXXXXXXXXXXXXXKKRKRSGNG-RRCKHEGCLLHPHFGLTRPEYCSKHKLPGMFNVKGRRCIHPECTRTPVYGRSGDPH 656
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig893.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRY9_ECTSI1.650e-4035.95EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig893contigA-nodosum_M_contig893:282729..285831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2148
Hectar predicted targeting categoryother localisation
Exons3
Cds size1212
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.6741502-UTR-A-nodosum_M_contig893:282728..2831831680870320.6741502-UTR-A-nodosum_M_contig893:282728..283183Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig893 282729..283183 +
1680870321.0265193-UTR-A-nodosum_M_contig893:285350..2858311680870321.0265193-UTR-A-nodosum_M_contig893:285350..285831Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig893 285351..285831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.750158-CDS-A-nodosum_M_contig893:283183..2839801680870320.750158-CDS-A-nodosum_M_contig893:283183..283980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 283184..283980 +
1680870320.8760986-CDS-A-nodosum_M_contig893:284706..2848111680870320.8760986-CDS-A-nodosum_M_contig893:284706..284811Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 284707..284811 +
1680870321.0120826-CDS-A-nodosum_M_contig893:285040..2853501680870321.0120826-CDS-A-nodosum_M_contig893:285040..285350Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 285041..285350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig893.15.1prot_A-nodosum_M_contig893.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig893 283184..285350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig893.15.1

>prot_A-nodosum_M_contig893.15.1 ID=prot_A-nodosum_M_contig893.15.1|Name=mRNA_A-nodosum_M_contig893.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=404bp
MVRESMFTRVTDTWEIMADEVPLIAEIGRNFSEVVAGRLEATCLAVEAEM
RVADEVAATRGETALVEPDWRGSNILRGDVLTRLETFRIYNTREAPAGEP
GFSPAEFRQDLVQRLRATREAVVDRMNSIHKTVATAAGVHGLQFWPAISE
DEALMGIDYVAQCVLEKLKAAYLAAEGVRDPTGRVPVGNIRERLLEKKHE
TQAAAAKELPKGHVHRKNSSRVDGVTSADNSAEMAASTRRPPRGASANTK
RRRSGSGVRRCKNKECSLHPHFGFTRPEYCSHHKLPGMFNVKGRRCIDPE
CTRTPVYGKNGDPHPTYCAAHKLHNMIDIKNPTCREQSCNRQPSFGSPQD
RRATYCASHMLEGMVNVRRILAAKGSSRRSRRERSSAADAEAYIAKPSAS
RRG*
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mRNA from alignment at A-nodosum_M_contig893:282729..285831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig893.15.1 ID=mRNA_A-nodosum_M_contig893.15.1|Name=mRNA_A-nodosum_M_contig893.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3103bp|location=Sequence derived from alignment at A-nodosum_M_contig893:282729..285831+ (Ascophyllum nodosum dioecious)
GCCTTGGTTGTCACTGACCCACCTTGAGAAGCCTGCGCGGAGCCTTTTCC
TCCCGTTCCAACGACGAGGAGATTGACGAGGCCAGACATTCACAAAGTGC
GCAGCCATTGAGTGATTCTCCCGACGATGAAAACTTCGAGTTCTTGCGGA
ACCTCCTTCAAGAAGCAGAGGCCTCACCTGCTGTCGCTGCATTCCCCAGT
GTGCCTAGAAGTACCTCATTTCCCGGTGCGGCCGAGAAGGTATCCTCCTC
ATGGATCCCGGTGCAAAACCACTCGCCTACTGTCTCACCCCATCCCGGCA
TCATAACCGCGGGGGTAGGATCGGCAGTTCAAGCGGCCAGAGTGGGTTCG
AGCAACTTCGTTACCGGAAGCGCCACTGCCCTCCACGAGCTAGTCGAGGA
GTCCAAGCTTCACGCGGCGGATGAAGTCGCTGCGTGTGTGTGGCTTGCGG
GGGACATGGTTCGAGAGAGTATGTTCACTCGCGTGACGGACACGTGGGAA
ATTATGGCGGATGAGGTACCGCTCATCGCCGAGATTGGTAGAAACTTCAG
CGAGGTGGTAGCAGGGCGACTCGAAGCAACTTGTCTAGCGGTTGAGGCCG
AGATGAGGGTGGCCGATGAAGTTGCCGCGACCAGGGGTGAGACGGCTTTG
GTCGAGCCTGACTGGCGCGGCAGCAACATTTTACGAGGTGACGTGCTCAC
CAGACTGGAGACGTTTAGGATCTACAATACCAGAGAGGCGCCTGCGGGTG
AACCAGGTTTCTCGCCAGCCGAGTTCCGTCAAGACCTAGTGCAGAGACTG
CGGGCCACGAGAGAAGCCGTTGTTGACAGGATGAACTCTATCCACAAGAC
GGTGGCTACCGCGGCCGGGGTTCATGGCCTTCAGTTCTGGCCAGCTATCA
GCGAGGACGAAGCGTTGATGGGCATCGACTATGTGGCTCAATGTGTGTTG
GAGAAGCTGAAGGCCGCCTACCTCGCGGCCGAGGGAGTGCGAGACCCAAC
GGGCCGTGTGCCAGTTGGCAACATCAGAGAGCGCTTGCTCGAAAAGAAAC
ATGAGACTCAGGCTGCAGCCGCCAAGGAACTGCCCAAAGGTCACGTGCAC
AGAAAGAATAGTTCACGTGTAGATGGTGTAACAAGCGCCGACAACTCAGC
CGAGATGGCTGCAAGCACCCGAAGGCCCCCTCGTGGCGCCAGCGCAAACA
CGAAAAGAAGAAGGTCTGGGAGTGGGGTTAGAAGGTGCAAAAATAAGGAA
TGGTGAGTATCACGTGATGGTTTCAAGACTCTTAAGGGGTTCTAACCAAA
CAAGAAAACAAACACGGTCAAAGACTTGTTCGTCGGAAGGAGGGTTAAAT
ACACCACAAATTGTCCCCACTTGCGGGTATCGTTTTGATACACCCTCTGA
TATACTTAGTTGTATTTGGGTTATACTAGTCCACCTAGGGTAGGGGCTGG
ATAGCTTCATCTCCGAGAGGGGTTGTTTTGTTACTTTCCCTCTAAACTTG
GGGACGGGTTGGTTATATCCCCGCCCCCTTTGAAAGGTGCACGGAGTCTC
TTCGTCCAGCTGTGGGATGGTCGCATCTTCACGACCTATGTAATTTCACT
GATACCCTGTTGGAGACAGCGGGGAAGTCGTTACTCCATTCATGCGGGCC
GGAACTTACCCGACAAGAAATTTCGCCACCTTAGGACTGTCATAGTTATA
GCCGCCGTTTACCGGGGTTCGACCTCAATGCGTAACATTAAGACTTCACC
TACTGGCACTGTCTTCAGCGTTGAAGGACTCGAAGCGTGTTTCGCAGAGC
TTGTTCGCCAACGGCCGACTAAAATCTCTCGCACCTAGGGCCGTTACATG
GGGCACCAGCCGTGGATTTATCCACAATATCCGGCGCAGAAATTGTAATA
AATGAAACCCCCCATTCGTCTGATCTCCCGTGCTTCTCGTGCCTGTCGTC
AATCACTACTTCCGGGTTCCGTTCTCAGCTCTCTCCATCCGCATTTTGGA
TTTACCCGCCCGGAATACTGTTCTCATCATAAGCTCCCCGGCATGTTCAA
CGTCAAAGGGCGCCGATGCATTGATCCGGAGTGGTGAGTGACAGTTTTTT
CTCTCGTCATGTCTCGCCGTTTATATTTTCATAGGAGTCCACCAACTCCG
CACCTGCTGATCGTATGATGCCACACTTGAGCATAGAGACGCACTCTCCC
TGGGTAGCTAGCACGCGCTCGCCAAGGCCTTCACTACCCAGCGATGATCC
TGAAACCCTTTTGCGCGAATCTTGCCGGGTTATGGTCGTTCCTCTGCTGT
TCACTTGCGCAGCACACGTACTCCTGTGTATGGGAAGAATGGGGACCCTC
ATCCCACGTACTGCGCGGCGCACAAGCTGCACAACATGATCGACATCAAG
AACCCAACCTGCCGTGAACAGTCCTGCAACCGCCAGCCGAGCTTCGGGTC
GCCTCAGGACCGGAGGGCTACCTACTGCGCGTCGCATATGTTAGAGGGGA
TGGTAAACGTACGGCGGATACTGGCAGCAAAGGGTTCGTCCAGGCGCTCA
CGTCGCGAAAGATCGTCGGCTGCGGACGCTGAGGCGTACATCGCCAAGCC
CTCTGCATCGAGGCGCGGTTAACCTTGCGCGGGTATTCGTGAGGCGCGTG
GAGAGAGGTGGAGAAAAATATTTATCCATAACGAAGACGAGTGTACTTGC
TGTTGTTGTCGCGAGGGGGGGGGGCTTTAGGCGTTGTCCCATTTTTCTAC
CTGCAGTATTTCGCCGTTCTCATCTTGTCGAAGCAGTGGTCCGCAGCAGT
ACTGCATTTAGAGGAACAGATGCTGCCTTCGTCACCATCGCTACCATTTT
ACAGTACATAGCAATGAAATAGGAGGAGAGAACGCCGCTTGGGTGAGAAT
CTGTGGCCGTTACTATTTTTTTGTGCCTACTAGTTAAGCTGGCCCTATGG
ACCGTGTCTAGTACGATCTGCCGTTTTTAAGAGCAGGAGGAATATGATAG
CGGCAAAAACGAGGCGCTGCACGAGCGCATTAGCTGTGCTGTTAAGGCTT
CAAGTGAAAAAAAAAAAAAAAACGCGCCAAACGTTTGCTGTACTCGAAGA
GGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig893:282729..285831+

>mRNA_A-nodosum_M_contig893.15.1 ID=mRNA_A-nodosum_M_contig893.15.1|Name=mRNA_A-nodosum_M_contig893.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at A-nodosum_M_contig893:282729..285831+ (Ascophyllum nodosum dioecious)
ATGGTTCGAGAGAGTATGTTCACTCGCGTGACGGACACGTGGGAAATTAT
GGCGGATGAGGTACCGCTCATCGCCGAGATTGGTAGAAACTTCAGCGAGG
TGGTAGCAGGGCGACTCGAAGCAACTTGTCTAGCGGTTGAGGCCGAGATG
AGGGTGGCCGATGAAGTTGCCGCGACCAGGGGTGAGACGGCTTTGGTCGA
GCCTGACTGGCGCGGCAGCAACATTTTACGAGGTGACGTGCTCACCAGAC
TGGAGACGTTTAGGATCTACAATACCAGAGAGGCGCCTGCGGGTGAACCA
GGTTTCTCGCCAGCCGAGTTCCGTCAAGACCTAGTGCAGAGACTGCGGGC
CACGAGAGAAGCCGTTGTTGACAGGATGAACTCTATCCACAAGACGGTGG
CTACCGCGGCCGGGGTTCATGGCCTTCAGTTCTGGCCAGCTATCAGCGAG
GACGAAGCGTTGATGGGCATCGACTATGTGGCTCAATGTGTGTTGGAGAA
GCTGAAGGCCGCCTACCTCGCGGCCGAGGGAGTGCGAGACCCAACGGGCC
GTGTGCCAGTTGGCAACATCAGAGAGCGCTTGCTCGAAAAGAAACATGAG
ACTCAGGCTGCAGCCGCCAAGGAACTGCCCAAAGGTCACGTGCACAGAAA
GAATAGTTCACGTGTAGATGGTGTAACAAGCGCCGACAACTCAGCCGAGA
TGGCTGCAAGCACCCGAAGGCCCCCTCGTGGCGCCAGCGCAAACACGAAA
AGAAGAAGGTCTGGGAGTGGGGTTAGAAGGTGCAAAAATAAGGAATGCTC
TCTCCATCCGCATTTTGGATTTACCCGCCCGGAATACTGTTCTCATCATA
AGCTCCCCGGCATGTTCAACGTCAAAGGGCGCCGATGCATTGATCCGGAG
TGCACACGTACTCCTGTGTATGGGAAGAATGGGGACCCTCATCCCACGTA
CTGCGCGGCGCACAAGCTGCACAACATGATCGACATCAAGAACCCAACCT
GCCGTGAACAGTCCTGCAACCGCCAGCCGAGCTTCGGGTCGCCTCAGGAC
CGGAGGGCTACCTACTGCGCGTCGCATATGTTAGAGGGGATGGTAAACGT
ACGGCGGATACTGGCAGCAAAGGGTTCGTCCAGGCGCTCACGTCGCGAAA
GATCGTCGGCTGCGGACGCTGAGGCGTACATCGCCAAGCCCTCTGCATCG
AGGCGCGGTTAA
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