mRNA_A-nodosum_M_contig89.77.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.77.1
Unique NamemRNA_A-nodosum_M_contig89.77.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig89.77.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.240e-9
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   88 SRTRLNFGQKIELLGLLREKVTYGEIARRLKCGTTAIGKIAKERAVLEEDHALGGGRDCASKSTRGGAFPKVQ 306
            +RTRLNFGQ++E+L LL EK TY EIARR    T+AI  I  +R  LE+  A    R   SKS+R G FP+++
Sbjct:  102 TRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNA-RSTTSKSSRRGDFPELE 173
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BLAST of mRNA_A-nodosum_M_contig89.77.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.250e-9
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   88 SRTRLNFGQKIELLGLLREKVTYGEIARRLKCGTTAIGKIAKERAVLEEDHALGGGRDCASKSTRGGAFPKVQ 306
            +RTRLNFGQ++E+L LL EK TY EIARR    T+AI  I  +R  LE+  A    R   SKS+R G FP+++
Sbjct:  102 TRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNA-RSTTSKSSRRGDFPELE 173
[Close]
BLAST of mRNA_A-nodosum_M_contig89.77.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.150e-8
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   88 SRTRLNFGQKIELLGLLREKVTYGEIARRLKCGTTAIGKIAKERAVLEEDHALGGGRDCASKSTRGGAFPKVQ 306
            +RTRLNFGQ++E+L LL EK T+ EIARR    T+AI  I  +R  LE+  A    R   SKS+R G FP+++
Sbjct:   81 TRTRLNFGQQLEVLKLLDEKTTHAEIARRYSISTSAISLIKGKRQQLEQAAATNA-RSTTSKSSRRGDFPELE 152
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Y6_9PHAE4.240e-950.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH6_9PHAE7.250e-950.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE3.150e-849.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:782954..784709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FS63
PFAMsTransglut_core
Model size727
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.26e-05
EggNOG OGs2DPTS@1|root,2S6A9@2759|Eukaryota
DescriptionTransglutaminase-like superfamily
Cds size336
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870315.505167-UTR-A-nodosum_M_contig89:782953..7833421680870315.505167-UTR-A-nodosum_M_contig89:782953..783342Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 782954..783342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870315.5184586-CDS-A-nodosum_M_contig89:783342..7833781680870315.5184586-CDS-A-nodosum_M_contig89:783342..783378Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 783343..783378 -
1680870315.5312998-CDS-A-nodosum_M_contig89:784409..7847091680870315.5312998-CDS-A-nodosum_M_contig89:784409..784709Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 784410..784709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.77.1prot_A-nodosum_M_contig89.77.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 783343..784709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.77.1

>prot_A-nodosum_M_contig89.77.1 ID=prot_A-nodosum_M_contig89.77.1|Name=mRNA_A-nodosum_M_contig89.77.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
STGKRKADNTRGRGNIETSKKHASDSKSKSRTRLNFGQKIELLGLLREKV
TYGEIARRLKCGTTAIGKIAKERAVLEEDHALGGGRDCASKSTRGGAFPK
VQPRSAMKTQA*
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mRNA from alignment at A-nodosum_M_contig89:782954..784709-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.77.1 ID=mRNA_A-nodosum_M_contig89.77.1|Name=mRNA_A-nodosum_M_contig89.77.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1756bp|location=Sequence derived from alignment at A-nodosum_M_contig89:782954..784709- (Ascophyllum nodosum dioecious)
AGCACGGGCAAACGCAAAGCAGACAACACGCGTGGGCGAGGAAATATTGA
GACAAGTAAGAAACATGCGTCCGACTCGAAGAGCAAGTCCCGCACTCGGC
TTAATTTTGGCCAGAAGATCGAGCTTCTTGGGCTATTGAGAGAGAAGGTT
ACCTACGGCGAGATAGCGCGACGATTAAAGTGTGGTACCACCGCGATAGG
TAAGATCGCCAAGGAAAGAGCGGTTCTGGAGGAGGACCACGCATTGGGTG
GAGGACGTGATTGCGCTTCAAAAAGTACGCGAGGAGGGGCATTTCCTAAG
GTGTGTTTCAGCAGCACAGCAGTTGGAGGAGCAGAAAGGGTTCGCAACCG
CTCTGTTGCAGAATTCGCAGGACGAGTTGATAGCGAGGGTTAACAAGACG
CACGTAGTGGGGGATCCTTCTGACGACGAGCTAGACGATGCGAAACCGTT
GAGAGCACGGGCGAAGGGGTGGTGGCAAGAGGGTCGATGTCACCACCATC
ATACGCATAACTTTCGTATTTTTTTGGCCCTCTGGAGTATTTCGTCCAGT
CATGTGGCAATGACGAAGCAGGAAATCGTTTGCGTAGGGCGAAGATGTCG
TTTATCAGAGGTTTTGAGTCTAAACCAGGGCGGCAGGCAGACATGAGGGA
ATCTGCGCAAGCCTAGTGCGTGCACATGACAGCAGTAGTAGCAGTGTGAA
ACTGTATCGCAGTACGGCAGTATTGGTGGGTTTGCCGTGTTGTGGGCACT
GCAGTTTCTCCATGGGTGGTGTGAAAATAAAAAAGGCACAACAGTTCTCC
CCGACATTATACTGTTGACCCAATGTTATTACCATCGGGGAACCCGTTTA
AATGCCATGAAGGGGTTTTGTATTTTCAGCTATTGATCCCACCTAAACGT
TTTGACATTTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGCA
TTCAGATTTTTCTTTAAACATCAATCAGTAATTATACTACCACGGCATTA
GCATTTTGGTGCCTTACGTTCTGAGTTGCTCATTGTTTGCTGCATAGACA
ACAGATGCATGCCCCGTACTGAGAACTACTGTATCTTTTCGATGCTCCTT
CTTCCATAGCCAATTTTCACGATTTGTCCCGGTATAGCAGGGTCAGTTTA
GCGAGTGGTCTCGATATAGCGGTACTTTACCCTTCTGTCACGTACCCTCG
CTATATCGGGACCTCGATTGTACTCCAATTGGTACACAAAGGTTAAGATA
TACTCTTCCTCCTGGAGCTTTACAGCATAACTAGCCCTAGCCATACTAGT
ATAATAGGCTGTCAAACTTATCTACTAACAGGTACAGCCCCGCTCTGCCA
TGAAGACTCAAGCATGAAGACTCGAGATCGAAGGACGGTCAGGTATCTGA
CAACCCGCCTCGGAGTAACGACATTTTGGAACATAAGAGCGTACCCATCA
TGGTCTTCAGGCTGGACTTTTGACCCTGACAAGAACTGTATCTGACGACA
CTTCGGGAATCCAACATATTCATCCGGACCTTCAGGCTTTTCTGGGAAAA
ATGGACAACTGTCACGGGGTTGTTTAAGGCCTACCTGGCATTTTGGTCAA
CATATGCTTCTTCGCTTGTTTAATCTGGAAAAAGTGGGGAATTGTCACGG
GGTTGTTTAAGGCCTACCTGGCATTTTGGTCAACAGATGCTTCTTCGTTT
GTTTATTCTGATCAACGTGAGACCATAGCCCTCAAGTTAGATTTTACATA
TGAGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig89:782954..784709-

>mRNA_A-nodosum_M_contig89.77.1 ID=mRNA_A-nodosum_M_contig89.77.1|Name=mRNA_A-nodosum_M_contig89.77.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig89:782954..784709- (Ascophyllum nodosum dioecious)
AGCACGGGCAAACGCAAAGCAGACAACACGCGTGGGCGAGGAAATATTGA
GACAAGTAAGAAACATGCGTCCGACTCGAAGAGCAAGTCCCGCACTCGGC
TTAATTTTGGCCAGAAGATCGAGCTTCTTGGGCTATTGAGAGAGAAGGTT
ACCTACGGCGAGATAGCGCGACGATTAAAGTGTGGTACCACCGCGATAGG
TAAGATCGCCAAGGAAAGAGCGGTTCTGGAGGAGGACCACGCATTGGGTG
GAGGACGTGATTGCGCTTCAAAAAGTACGCGAGGAGGGGCATTTCCTAAG
GTACAGCCCCGCTCTGCCATGAAGACTCAAGCATGA
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