mRNA_A-nodosum_M_contig89.38.8 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: D8LB48_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB48_ECTSI) HSP 1 Score: 535 bits (1379), Expect = 3.270e-178 Identity = 284/476 (59.66%), Postives = 325/476 (68.28%), Query Frame = 3
Query: 576 RSEKGRSKRQRXGDAKRARKERALAQA-EKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPELSLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKE-IAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARRRMEENPSL-GGWKGTKRARAAATA 1994
R + GR KR R GDAKR RK++ALA A EKCEYY DD GLRRVRPYIYDF THAKERWLGR V+DVFSAEFGG RS+YE A+R GLLTVNG +DY +N+D++CN+ THRHEPPV GGDIPIVSESA+E+VVDKPCTVPIHPCGSYRFNTLFYI+ RQRP+L+LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIG+GRTRKTYLARVSG+FGQ LP +RR+ GSPS ELWWRYE+ GE VV+G + G ++G + + ++ + S G KE + +RVNCPIRVLD K GVYECH GKEAQTV+RKV YD +SDTSV+ECTPVHGRTHQIRLHLQW GHPIANDPCYGG+LHFG+PEA+RR EENP L GGWKG + + A A
Sbjct: 51 RGDDGRGKRPRKGDAKRERKKKALAHAAEKCEYYVDDHGLRRVRPYIYDFQTHAKERWLGRTVVDVFSAEFGGEARSHYENAVRGGLLTVNGNKVGVDYELQNSDLICNK------THRHEPPVCGGDIPIVSESAEELVVDKPCTVPIHPCGSYRFNTLFYIMHRQRPDLTLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGSGRTRKTYLARVSGDFGQRLPLDRRKQGSPSXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATDELWWRYESLGEGVVKGRLRSSG-------AISGEEGGLAESSASSGGVGSGGAGGEKEGVTVRVNCPIRVLDPKHGVYECHPSGKEAQTVVRKVGYDTASDTSVVECTPVHGRTHQIRLHLQWAGHPIANDPCYGGELHFGNPEAKRRAEENPDLEGGWKGVPGSNSTAAA 508
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A6H5KK40_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK40_9PHAE) HSP 1 Score: 394 bits (1013), Expect = 4.100e-126 Identity = 223/395 (56.46%), Postives = 253/395 (64.05%), Query Frame = 3
Query: 576 RSEKGRSKRQRXGDAKRARKERALAQA-EKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPELSLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDA-NTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTV 1754
R + GR KR R GDAKR RK++ALA A EKCEYY D GLRRVRPYIY+F THAKERWLGR V+DVFSAEFGG PRS+YE AIR GLLTVNG +DY +N+D++CNR THRHEPPV GGDIPIV ESA+E+VVDKPCTVPIHPCGSYRFNTLFYI+ RQRP+L+LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIG GRTRKTYLARVSG+FGQ LP +RR+ GSPS ELWWRYE+ GE VV+G + G V+G + + ++ A GE + + +RVNCPIRVLD K GVYECH GKEAQTV
Sbjct: 31 RGDDGRGKRPRKGDAKRERKKKALAHASEKCEYYVDGHGLRRVRPYIYNFQTHAKERWLGRTVVDVFSAEFGGEPRSHYENAIRGGLLTVNGNKVGVDYELQNSDLICNR------THRHEPPVCGGDIPIVFESAEELVVDKPCTVPIHPCGSYRFNTLFYIMHRQRPDLTLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGLGRTRKTYLARVSGDFGQRLPLDRRKQGSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXADELWWRYESLGEGVVKGRLRSSG-------AVSGEEGGLAESSVSSGRAGGGGAGGEKEGVTVRVNCPIRVLDPKHGVYECHPSGKEAQTV 406
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A2P4WXF4_9STRA (RNA pseudouridylate synthase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXF4_9STRA) HSP 1 Score: 250 bits (638), Expect = 6.120e-71 Identity = 167/469 (35.61%), Postives = 227/469 (48.40%), Query Frame = 3
Query: 537 KARRFDTGSVDKQRSEKGRSKRQRXGDAKRARKERALAQAEKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPEL-SLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARRRMEEN 1940
K RR + V++Q ++K +SKR DAK A R A+A K + + G R V PY+Y+F T AK RW R+++++F+ EFG N YYE AI G ++VN K D + KN D++ + HRHEPPV+G ++P+V E D IVV KP ++P HPCG+YR N+L I+Q RP+L L + HRLDRLTSG+ + AK A +A + I + KTYLARV G F PE LD V L K+ D+ A I ++G AI +NCP+R L A+DGV+ECH EGK ++T+++ V D TS+++C PV GRTHQIRLHLQ +G PIANDPCYGG+LHFG+ R + E+
Sbjct: 30 KLRRAERDPVERQ-AKKRKSKR----DAKNAN--RFQAEAPKYSFAN---GYRMVEPYVYEFRTFAKARWFDRELLEIFTKEFGANSPEYYEFAIASGRISVNHKIVPADTIIKNGDLII------HTAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHTIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNATKAKALSSIIADRQASKTYLARVRGQF-----------------------------------------------------------------------------PEVLDSD-------------VQAKLVKQAKDNC------------------PASVITFPEEG-----AILINCPLRCLSARDGVWECHEEGKSSETLVQLVRTDKC--TSLMKCKPVTGRTHQIRLHLQLIGFPIANDPCYGGELHFGESAERAKEIED 367
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A5D6Y583_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y583_9STRA) HSP 1 Score: 248 bits (632), Expect = 3.540e-70 Identity = 149/413 (36.08%), Postives = 201/413 (48.67%), Query Frame = 3
Query: 687 GLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPELS-LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEAR 1922
G R V+PY+Y+F THAKERW GR+++ +F+AEFG N YY AI+ G +TVN + D V N D++ ++THRHEPPV+G +IPIV E D +VV KP ++ HP G+YR+N+L ILQ RP+L L + HRLDRLTSG+ + AK A +A + I + KTYLAR G F L P + +LA +A +C + T+ DA+ + ++CP+R + A++GVYECHAEGK ++TV+ V S T V +C PV GRTHQIRLHLQ +G PIANDPCYGG+LHFG+ +AR
Sbjct: 62 GYRLVKPYVYEFRTHAKERWYGRELLAIFTAEFGANSPDYYRFAIQSGRITVNERIVGPDTVINNGDLIV------HKTHRHEPPVSGEEIPIVHEDDDLLVVCKPPSITTHPSGAYRYNSLHLILQHMRPDLPPLHIVHRLDRLTSGIVLLAKNAAKAKELSLCIAERQASKTYLARARGCFPTALTPNAKL--------------------------------------------------------------QLAQTAQA---------------KCPASSV--------------------TFTDADELV----------------ISCPLRCVSAREGVYECHAEGKPSETVVSLVRN--GSATCVFKCKPVTGRTHQIRLHLQLIGFPIANDPCYGGQLHFGESQAR 353
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A8K1CHM9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHM9_PYTOL) HSP 1 Score: 248 bits (633), Expect = 6.830e-70 Identity = 158/440 (35.91%), Postives = 211/440 (47.95%), Query Frame = 3
Query: 627 ARKER------ALAQAEKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPEL-SLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARR 1925
ARKER A ++AE EY+ +D G R V+PY+Y++ T+AKERWLGR +I +F+ EFG N YY+ AI+ G +TVN K + + KN D++ ++ HRHEPPV G ++PI E D +VV KP ++P HPCG+YR N+L I+ R RP+L L + HRLDRLTSG+ I AK+ +A + + I KTYLARV G+ L E DD + V A N A I DD I ++CP+R L +D V+ECH EGKE+QT +R + D T+++EC P+ GRTHQIRLHLQ +G PIANDPCYGG+LHFG+ RR
Sbjct: 68 ARKERKRSAKAAHSEAEP-EYFFED-GYRFVKPYLYEYRTYAKERWLGRPLISMFTEEFGANSPEYYQAAIQSGRITVNDKIVTPETIIKNRDLIL------HKAHRHEPPVIGEEVPIAYEDDDLLVVVKPSSMPTHPCGAYRHNSLHTIVHRMRPDLPQLNIVHRLDRLTSGIVILAKSGVKAKALSQCISDREASKTYLARVRGH------------------------------------------------------------------------------------------------------LPTEAFDDAFKQQLVATAAKNC-----AASEITFPDDQ-----TIHISCPLRCLSQRDAVWECHEEGKESQTRVRVLRID--QQTTLVECKPITGRTHQIRLHLQLLGFPIANDPCYGGELHFGESSERR 385
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A329RSN8_9STRA (PseudoU_synth_2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329RSN8_9STRA) HSP 1 Score: 244 bits (623), Expect = 9.630e-69 Identity = 159/448 (35.49%), Postives = 217/448 (48.44%), Query Frame = 3
Query: 597 KRQRXGDAKRARKERALAQAEKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPEL-SLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARRRMEE 1937
KR+ DAK A+ R A+A K + + G R V PY+Y+F T+AK RW R+++++F+ EFG N YY+ AI G ++VN K D + KN D++ + HRHEPPV+G ++P+V E D IVV KP ++P HPCG+YR N+L I+Q RP+L L + HRLDRLTSG+ + AK + +A + I + KTYLARV G F L SE+ ++ VN A N A I D+G AI ++CP+R L A+DGV+ECH EGK ++T++R V D TS+++C PV GRTHQIRLHL+ +G PIANDPCYGG+LHFG E+ R EE
Sbjct: 50 KRKSKQDAKSAK--RFQAEAPKYSFAN---GYRMVEPYVYEFRTYAKARWFDRELLEIFTKEFGANSPEYYKFAIASGRISVNHKIVPADTIIKNGDLII------HAAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHTIVQATRPDLPQLNIVHRLDRLTSGVMLLAKNSAKAKALSSIIADRQASKTYLARVRGQFPDLL------------------------------------------------------------------NSEIQ-------------------------------------DKLVNQAKENC-----PASIITFPDEG-----AILISCPLRCLSARDGVWECHEEGKPSETLVRLVRTDKC--TSLMKCKPVTGRTHQIRLHLRLIGFPIANDPCYGGELHFG--ESAERAEE 369
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: G4YVW7_PHYSP (PseudoU_synth_2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVW7_PHYSP) HSP 1 Score: 238 bits (608), Expect = 6.350e-67 Identity = 156/465 (33.55%), Postives = 220/465 (47.31%), Query Frame = 3
Query: 537 KARRFDTGSVDKQRSEKGRSKRQRXGDAKRARKERALAQAEKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPEL-SLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARRR 1928
K RR + V++Q ++K +SKR DAK A+ QAE +Y + G R V PY+Y+F T AK RW R+++++F+ EFG N YY+ AI G ++VN K D V KN D++ + HRHEPPV+G ++ +V E D IVV KP ++P HPCG+YR N+L I+Q RP+L L + HRLDRLTSG+ + AK A +A + I + K YLARV G F L P A+ E L ++ + + + KE + ++CP+R L A+DGV+ECH EGK ++T+++ + D TS++EC P+ GRTHQIRLHLQ +G PIANDPCYGG+LHFG+ R +
Sbjct: 8 KLRRAERDPVERQ-AKKRKSKR----DAKNAKH----FQAEAPKYSFAN-GYRMVEPYVYEFRTFAKARWFDRQLLEIFTKEFGANSPEYYKFAIASGRISVNHKIVPADTVIKNGDLII------HTAHRHEPPVSGEEVSVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHSIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNAAKAKALSAIIANRQASKMYLARVRGQFPDLLDP---------------------------------------------------------------------AVQEKLV--------------------------------------------SSAKVTCPASEISFPKEGGVLISCPLRCLSARDGVWECHEEGKSSETLVKLIRTDKC--TSLMECKPITGRTHQIRLHLQLIGFPIANDPCYGGELHFGESTERAK 341
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A2D4BPM1_PYTIN (RNA pseudouridylate synthase, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPM1_PYTIN) HSP 1 Score: 240 bits (612), Expect = 1.290e-66 Identity = 156/444 (35.14%), Postives = 214/444 (48.20%), Query Frame = 3
Query: 597 KRQRXGDAKRARKERALAQAEKCEYYHDDQGLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPEL-SLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARR 1925
KR + KR+ K A A A + +YY +G R V PY+Y+F T AKERW GR ++ +F+ EFG N YY AI G +T+N + D V KN D+V ++ HRHEPPV+G ++ VV KP ++P HPCG+YR N+L I+ R RP+L +L + HRLDRLTSG+ I AK+ +A + + I KTYLARV G+ L +Q R++E A A+ + SE++ + Q +DG DV I V+CP+R L +D V+ECHA+GKE+QT +R D + T+++EC P+ GRTHQIRLHLQ +G PIANDPCYGG+LHFG+ RR
Sbjct: 86 KRMARKERKRSVKAAANAAAAEPDYYFS-RGYRFVTPYVYEFRTFAKERWFGRTLLAMFTEEFGANSPEYYRAAIASGRITINNRIVSPDTVIKNRDLVV------HKAHRHEPPVSGEEVXXXXXXXXXXVVAKPPSMPTHPCGAYRHNSLHTIVSRMRPDLPTLNIVHRLDRLTSGIVILAKSGAKAKALAQCISDREASKTYLARVRGHLPLQLDDAFKQ-----------------------------------------------RLVETA--RANCAASEVSFLQ------------------------QDDDGADV-----------------------------------IHVSCPLRCLSPRDAVWECHADGKESQTRVRVRRLDGA--TTLVECKPITGRTHQIRLHLQLLGFPIANDPCYGGELHFGESADRR 412
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A7S2UKE3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKE3_9STRA) HSP 1 Score: 236 bits (602), Expect = 6.400e-66 Identity = 164/462 (35.50%), Postives = 230/462 (49.78%), Query Frame = 3
Query: 690 LRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGD--------------------IPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPELSLRV--CHRLDRLTSGLTIFAKTAERAGVIQKQI-GAGRTRKTYLARVSGNFGQYLPPE-RRQAGSPSTFAETCSAPP-----TRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIA------IRVNCPIRVLDAKDGVYECHAEG-----------KEAQTVIRKVAYDVSSDTSVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFGDPEARRRMEE 1937
+R V+PY Y F T AKERW+GR V+DV+ EFG P+SYY+ AI G + V+GK D++ K + + HRHEP VA D I IV ES IVVDKP T+PIHPCG Y +N+L +IL +RP+L +V HRLDRLTSGLTIFAK+ E A + K I +K YLARV G F ++PPE R ++ SP + + PP R ++ + + D++ S + N + +A GT E A + + + E ++ L+KE + ++P ++T ++ E KE A + CP R+ K G+ E + K AQT V YD +D++V+ C PV GRTHQIRLHL+++GHPIANDP Y G++ FGD + R +E
Sbjct: 1 IRIVKPYPYTFATFAKERWIGRTVLDVYHDEFGSYPKSYYKAAINEGRILVSGKHVTCDFLIKGG------HELTHTVHRHEPAVAVCDLLLDNEDDTTIVMEDREKQLIRIVHESDSVIVVDKPSTLPIHPCGGYNYNSLIHILTSERPDLKEKVFTVHRLDRLTSGLTIFAKSTEVAKSMGKCIMDRDHCQKVYLARVKGKFPLHVPPELRTKSCSPD---QPNNVPPFVHGEKRMNSATSTMNNDSKQHASSEGENSRSNFGLGFWVTDASGTV----HENATLTSVFESGSSI--------ETLLSDLEKET---TNNQPDTSSSLPGDDGISSTPTCKETDSPNEEKEEASSGVYWFHLACPTRIAVKKTGICEAGSFSNLDPSLYRKTVKPAQTSFAVVGYDAKTDSTVVLCKPVTGRTHQIRLHLEYMGHPIANDPNYSGEIWFGDEKGERLYKE 438
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Match: A0A024FZK7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZK7_9STRA) HSP 1 Score: 234 bits (598), Expect = 2.420e-65 Identity = 149/426 (34.98%), Postives = 196/426 (46.01%), Query Frame = 3
Query: 687 GLRRVRPYIYDFLTHAKERWLGRKVIDVFSAEFGGNPRSYYEQAIRCGLLTVNGKSTDLDYVFKNNDVVCNRQAVEYRTHRHEPPVAGGDIPIVSESADEIVVDKPCTVPIHPCGSYRFNTLFYILQRQRPEL-SLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGAGRTRKTYLARVSGNFGQYLPPERRQAGSPSTFAETCSAPPTRASACEAVASTDARGLTSLASKTDEGNSSADRVIEEAGGTASPSGSELAAIPEALDGPGELWWRYETPGECVVRGLQKEDGDDVRPNETVNGAVPNTWDDANTAIAILSEDDGEAKEIAIRVNCPIRVLDAKDGVYECHAEGKEAQTVIRKVAYDVSSDT----SVLECTPVHGRTHQIRLHLQWVGHPIANDPCYGGKLHFG-DPEARRRMEENPS 1946
G R V+PY+Y++ AKERW R++ DV + EFG YY+ A+R G +TVN Y +N D + +RTHRHEPPV+ +IP+V E + +VV KPC++P HPCG+YR N+L IL PEL SL V HRLDRLTSG+ IFAK A + ++ + RKTYLA V G+ IP W ET +++D R + I + E IRV CP+R L K+GV+ECH +GKE++T+ V ++ SVL C PV GRTHQIRLHLQ +G PIANDPCYGGKLHFG +PE + ++E S
Sbjct: 54 GYRLVKPYVYEYQAFAKERWYKRELFDVLTTEFGAYTSQYYDVAVRSGRVTVNHSIVSPTYQIQNGDFIV------HRTHRHEPPVSSDEIPVVHEDDELLVVSKPCSIPTHPCGAYRHNSLHSILLHLFPELKSLHVVHRLDRLTSGIVIFAKNGATAKKLSTEMTKRQVRKTYLAGVKGS-----------------------------------------------------------------------------IP--------FKWDEET--------RKRQDKIKERARD------------------ICDASEISFSEKQIRVKCPLRCLSHKNGVWECHKDGKESETIFELDQLTVPTENRGALSVLRCYPVTGRTHQIRLHLQLIGLPIANDPCYGGKLHFGVNPELSKTIDETKS 362 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.38.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig89.38.8 >prot_A-nodosum_M_contig89.38.8 ID=prot_A-nodosum_M_contig89.38.8|Name=mRNA_A-nodosum_M_contig89.38.8|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=745bp MLPYLMLVPPLAQPNTPLIPLVAVEVSTYREKTVVLNRGAKHPDRRTALTback to top mRNA from alignment at A-nodosum_M_contig89:299113..307280- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig89.38.8 ID=mRNA_A-nodosum_M_contig89.38.8|Name=mRNA_A-nodosum_M_contig89.38.8|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8168bp|location=Sequence derived from alignment at A-nodosum_M_contig89:299113..307280- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig89:299113..307280- >mRNA_A-nodosum_M_contig89.38.8 ID=mRNA_A-nodosum_M_contig89.38.8|Name=mRNA_A-nodosum_M_contig89.38.8|organism=Ascophyllum nodosum dioecious|type=CDS|length=2235bp|location=Sequence derived from alignment at A-nodosum_M_contig89:299113..307280- (Ascophyllum nodosum dioecious)back to top |