mRNA_A-nodosum_M_contig89.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.2.1
Unique NamemRNA_A-nodosum_M_contig89.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Match: A0A6H5KPL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.520e-9
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  292 SDSSDD-PEVRRSVITGKRIMMNLD-RTNEDHARERGRKQLLQFMNSQF 432
            SD+SDD P VRRS ITGK+I M L+ +T EDHAR  GRK LLQFMNSQF
Sbjct:  128 SDTSDDEPGVRRSAITGKKIRMKLENQTTEDHARAAGRKHLLQFMNSQF 176
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BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Match: A0A6S9KA90_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KA90_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 1.580e-8
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  301 SDDPEVRRSVITGKRIMMNLDRTNEDHARERGRKQLLQFMNSQF 432
            SDDP+VRRS I+GK+I M LDR ++D ARERGR+ LL FMN+ +
Sbjct:  100 SDDPDVRRSAISGKKIKMKLDRDDDDLARERGRRHLLHFMNASY 143
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BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Match: A0A835ZG69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG69_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.270e-7
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  277 EGDSDSDSSDDPEVRRSVITGKRIMMNLDRTNEDHARERGRKQLLQFMNSQF 432
            +G  DSD  D P V+RSVITG+ I M +D+T +D ARERGR +LL FMNSQ+
Sbjct:  131 KGGDDSDG-DAPGVKRSVITGEVIKMKIDKTADDRARERGRAELLAFMNSQY 181
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BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Match: K0S0A4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0A4_THAOC)

HSP 1 Score: 54.3 bits (129), Expect = 2.020e-6
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  298 SSDDPEVRRSVITGKRIMMNLDRTNEDHARERGRKQLLQFMNS 426
            S D P VRRSVITGK+I M++++  +D ARER RK LL+FMNS
Sbjct:  107 SDDGPNVRRSVITGKKIKMHIEKDADDIARERARKDLLKFMNS 149
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BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Match: A0A7S2LUK6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LUK6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.080e-5
Identity = 23/38 (60.53%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  313 EVRRSVITGKRIMMNLDRTNEDHARERGRKQLLQFMNS 426
            EVRRSVITGK+I M++D+ ++D ARE+ RK+LL++MN+
Sbjct:  128 EVRRSVITGKKIKMHIDKDSDDIAREKARKELLRYMNA 165
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BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Match: A0A7S3QJZ6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJZ6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 9.990e-5
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  310 PEVRRSVITGKRIMMNLDRTNEDHARERGRKQLLQFMNS 426
            P VRRSVITG +I M++D+T +D  RE+ RK LL+FMNS
Sbjct:  199 PNVRRSVITGHKIKMHIDKTEDDIIREKARKDLLKFMNS 237
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KPL1_9PHAE7.520e-971.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S9KA90_HETAK1.580e-863.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZG69_9STRA2.270e-759.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0S0A4_THAOC2.020e-662.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2LUK6_9STRA5.080e-560.53Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3QJZ6_9STRA9.990e-561.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:17700..18460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog981085.XP_010094460.1
Model size435
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.00023
EggNOG OGs2AHYF@1|root,2RZ3G@2759|Eukaryota,37UV1@33090|Viridiplantae,3GJ7D@35493|Streptophyta,4JPVY@91835|fabids
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_004100.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870306.614305-CDS-A-nodosum_M_contig89:17699..178611680870306.614305-CDS-A-nodosum_M_contig89:17699..17861Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 17700..17861 -
1680870306.6272519-CDS-A-nodosum_M_contig89:18142..182381680870306.6272519-CDS-A-nodosum_M_contig89:18142..18238Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 18143..18238 -
1680870306.6372359-CDS-A-nodosum_M_contig89:18283..184601680870306.6372359-CDS-A-nodosum_M_contig89:18283..18460Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 18284..18460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.2.1prot_A-nodosum_M_contig89.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 17700..18460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.2.1

>prot_A-nodosum_M_contig89.2.1 ID=prot_A-nodosum_M_contig89.2.1|Name=mRNA_A-nodosum_M_contig89.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
GRSDPLPSSGGSSSSSDVDESERGRGRRRNRSESTERKKKKKRKKRAASE
LAMRKDKRRRHKKHDKKREKKRDKKKKEKRSKLSKREKHEKVEGDSDSDS
SDDPEVRRSVITGKRIMMNLDRTNEDHARERGRKQLLQFMNSQF*
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mRNA from alignment at A-nodosum_M_contig89:17700..18460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.2.1 ID=mRNA_A-nodosum_M_contig89.2.1|Name=mRNA_A-nodosum_M_contig89.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=761bp|location=Sequence derived from alignment at A-nodosum_M_contig89:17700..18460- (Ascophyllum nodosum dioecious)
GGTCGATCAGATCCGCTCCCCTCAAGCGGAGGAAGCAGTTCATCTTCCGA
TGTCGATGAAAGCGAGAGGGGGAGGGGGAGGCGGCGTAACAGGAGTGAAT
CAACTGAGCGCAAGAAGAAAAAAAAGAGGAAAAAGAGGGCAGCCTCCGAG
TTGGCAATGAGGAAGGATAAAAGACGAGTTGACAATGATGAAGAGCGTCA
AAAGGAGAAAGAGGTTCGAGAGAGACACAAGAAGCACGATAAGAAGCGCG
AAAAGAAGCGCGACAAGAAAAAAAAAGAAAAGAGATCCAAACTCTCTAAA
CGGGAGAAGCATGAAAAGGTGTGGCTGAGTTATCTGTGGCCAAACTAAAC
TGTACTATTTCCATCTGCATATGCAACACACCCAGTCTTGAGTTTCAAGT
ATATGGACACATAATTGTAGAATGCCAGCTGGGTTGCATATTTTCAAGAA
CTTGCGCAACTGCGATTGTACATACCTTTGTCTATTTTAAGCTGTTTTTG
GCTGTTTTTGGATTTGTGGCAAGTGAAACGTTCACGTGTCTGACTGACAT
TAATCAATCTGAATTGGTCTATACCTCATGCCCATGCTCGATTCAGGAGG
TCGAGGGTGACAGCGACTCGGACAGTTCGGATGACCCTGAAGTGCGGCGC
AGTGTCATAACGGGCAAGCGCATTATGATGAACTTGGACCGCACAAATGA
AGACCACGCTCGCGAACGGGGCCGCAAGCAATTACTCCAGTTTATGAACT
CGCAATTTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig89:17700..18460-

>mRNA_A-nodosum_M_contig89.2.1 ID=mRNA_A-nodosum_M_contig89.2.1|Name=mRNA_A-nodosum_M_contig89.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig89:17700..18460- (Ascophyllum nodosum dioecious)
GGTCGATCAGATCCGCTCCCCTCAAGCGGAGGAAGCAGTTCATCTTCCGA
TGTCGATGAAAGCGAGAGGGGGAGGGGGAGGCGGCGTAACAGGAGTGAAT
CAACTGAGCGCAAGAAGAAAAAAAAGAGGAAAAAGAGGGCAGCCTCCGAG
TTGGCAATGAGGAAGGATAAAAGACGAAGACACAAGAAGCACGATAAGAA
GCGCGAAAAGAAGCGCGACAAGAAAAAAAAAGAAAAGAGATCCAAACTCT
CTAAACGGGAGAAGCATGAAAAGGTCGAGGGTGACAGCGACTCGGACAGT
TCGGATGACCCTGAAGTGCGGCGCAGTGTCATAACGGGCAAGCGCATTAT
GATGAACTTGGACCGCACAAATGAAGACCACGCTCGCGAACGGGGCCGCA
AGCAATTACTCCAGTTTATGAACTCGCAATTTTGA
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