mRNA_A-nodosum_M_contig8856.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI) HSP 1 Score: 166 bits (421), Expect = 2.480e-49 Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1
Query: 10 MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR 282
MSSL ITL+D+VIDKPLQPV NYILVKMF A+SRTAGGIVLPDEAQDVPCEG VVA GPGRTHPLTGTLIPMCVSEGDTVLFSR+SGRKV+
Sbjct: 61 MSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVK 151
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.620e-29 Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query: 4 TC--MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREENI 294
TC M+ L TLDD+VI PLQPVSN+ILVK+ + S T GGIVLPD++ D P EG VVA GPGR+HP T LIPMCV+ G V++S++SG+KV+ + +
Sbjct: 45 TCLTMAELVHTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGL 143
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: F0Y075_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y075_AURAN) HSP 1 Score: 91.7 bits (226), Expect = 4.470e-22 Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1
Query: 58 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR---EENIVVK 303
L PV NY LVK+ T GG++LPD+A++ P EGSVVAAGPGR+HP TGTLI M V+EG++VL+ +F G V+ E++++++
Sbjct: 2 LSPVGNYALVKITEGKDATKGGVLLPDQAKEKPSEGSVVAAGPGRSHPDTGTLIAMPVAEGESVLYGKFDGTPVKYCGEDHMLIR 86
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.100e-21 Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 28 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR 282
TLDD I PL+PV+NYILVK+ I T GG+ LPD+A++ P G VVAAG G+ HP TG ++P V+EGD VL+ +F G V+
Sbjct: 32 TLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVK 116
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.360e-19 Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 31 LDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR---EENIVVK 303
LD I LQPVSN++LVK+ A+++TAGGI++P+ A+ P +G VA GPGR HP TG L+P+ V G+ V++ + G K++ E++++V+
Sbjct: 33 LDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVR 126
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A8J6CGT7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CGT7_DIALT) HSP 1 Score: 85.1 bits (209), Expect = 6.600e-18 Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 28 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVR 282
TLD+ V+D PLQP+ + +LVK+ A +T GG+ L E D P G+VVAAGPG+ HP T +I + GDT+LF ++G KV+
Sbjct: 50 TLDNMVLDGPLQPLKDQVLVKLAGAEKQTKGGLFLTGEMTDKPTRGTVVAAGPGKPHPYTDVMITNPIKAGDTILFGSYTGTKVK 134
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A7S2XTD7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTD7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.310e-17 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 10 MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSG 270
++S TLD E I P+ P+ N++LV+ +S T GGI+LPD+AQ+ P EG V+AAGPG HP TG LI V +G VL+ ++ G
Sbjct: 51 LASGPTTLDGETIRGPIAPLGNFVLVRTKDMLSSTEGGILLPDQAQERPTEGEVMAAGPGNIHPDTGILIDNPVIKGMNVLYGKYDG 137
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A7S2E919_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E919_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.820e-17 Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 25 ITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSG 270
+TL+ E I + P+ N++LV+ ++S T GGI+LPD++++ P EG VVAAGPG+ HP TGT I V+ G VL+ +F+G
Sbjct: 66 VTLEGEKIRGEITPLGNFVLVRQKDSLSATGGGILLPDQSKERPTEGEVVAAGPGKLHPHTGTRITNPVTAGVNVLYGKFAG 147
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A2M7I0G4_9BACT (Co-chaperonin GroES n=1 Tax=Ignavibacteriales bacterium CG12_big_fil_rev_8_21_14_0_65_30_8 TaxID=1974046 RepID=A0A2M7I0G4_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 4.430e-16 Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 58 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREE 288
L+P+++ ++VK A +T GGI+LPD A++ P EG++VAAGPGRT G ++PM V +GD VL+ ++SG +V E
Sbjct: 6 LKPLADRVIVKPMEADEKTKGGIILPDTAKEKPVEGTIVAAGPGRTSD-EGKVVPMSVKKGDKVLYGKYSGSEVTVE 81
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Match: A0A2E5GEI2_9BACT (Co-chaperonin GroES n=2 Tax=root TaxID=1 RepID=A0A2E5GEI2_9BACT) HSP 1 Score: 75.9 bits (185), Expect = 8.440e-16 Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 58 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCEGSVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKVREE 288
L+P+++ ++V+ PA ++AGGI+LPD AQ+ P +GSVVA GPG++ + G LI M V EGD VL+ ++SG ++ E
Sbjct: 5 LKPLADRVVVEPAPAEDKSAGGIILPDTAQEKPQQGSVVAVGPGKSSDV-GNLIEMTVKEGDKVLYGKYSGSEITHE 80 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8856.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8856.3.1 >prot_A-nodosum_M_contig8856.3.1 ID=prot_A-nodosum_M_contig8856.3.1|Name=mRNA_A-nodosum_M_contig8856.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp MSSLAITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDVPCback to top mRNA from alignment at A-nodosum_M_contig8856:6622..7593- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8856.3.1 ID=mRNA_A-nodosum_M_contig8856.3.1|Name=mRNA_A-nodosum_M_contig8856.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at A-nodosum_M_contig8856:6622..7593- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8856:6622..7593- >mRNA_A-nodosum_M_contig8856.3.1 ID=mRNA_A-nodosum_M_contig8856.3.1|Name=mRNA_A-nodosum_M_contig8856.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig8856:6622..7593- (Ascophyllum nodosum dioecious)back to top |