mRNA_A-nodosum_M_contig884.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig884.17.1
Unique NamemRNA_A-nodosum_M_contig884.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig884.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig884contigA-nodosum_M_contig884:283385..285263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1463853.JOHW01000006_gene4452
PFAMsABC_tran
Model size1416
Max annot lvl201174|Actinobacteria
KEGG koko:K01990
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000277
EggNOG OGsCOG1131@1|root,COG1131@2|Bacteria,2GIY8@201174|Actinobacteria
DescriptionABC transporter
Cds size783
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870295.7237923-UTR-A-nodosum_M_contig884:283384..2834261680870295.7237923-UTR-A-nodosum_M_contig884:283384..283426Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig884 283385..283426 +
1680870295.7592883-UTR-A-nodosum_M_contig884:284672..2852631680870295.7592883-UTR-A-nodosum_M_contig884:284672..285263Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig884 284673..285263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870295.7350864-CDS-A-nodosum_M_contig884:283426..2838441680870295.7350864-CDS-A-nodosum_M_contig884:283426..283844Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig884 283427..283844 +
1680870295.7485793-CDS-A-nodosum_M_contig884:284307..2846721680870295.7485793-CDS-A-nodosum_M_contig884:284307..284672Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig884 284308..284672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig884.17.1prot_A-nodosum_M_contig884.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig884 283427..284672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig884.17.1

>prot_A-nodosum_M_contig884.17.1 ID=prot_A-nodosum_M_contig884.17.1|Name=mRNA_A-nodosum_M_contig884.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=261bp
MFASSTIDGVGQPKAVQRAIPGATPPRGVAYIDRHSIQKIAKTEAFTVAE
VLSTAFDSHCHNPSQQYPSPEGLQGAQHSSAELLLSAAGLRGVRDRPCRD
LSRGQLLCLVLCIGVAHALAERETSGSLWRFGELAAREECVECEGGDVPA
PVLCLDEFLEVEDARVRRGVENACARLNSLGVTIVFATHVMDHVEGMLTS
TAGWPSDKASHTRSGSNSGGGGRVVTFTEARANEPCRLEACAYVEWKRSE
DADRQARRLM*
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mRNA from alignment at A-nodosum_M_contig884:283385..285263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig884.17.1 ID=mRNA_A-nodosum_M_contig884.17.1|Name=mRNA_A-nodosum_M_contig884.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1879bp|location=Sequence derived from alignment at A-nodosum_M_contig884:283385..285263+ (Ascophyllum nodosum dioecious)
GTCGAGGGAGCAGCGGCTGGCAGTTCTGGAGCTATTTCACCCATGTTTGC
CTCTTCGACGATTGACGGTGTCGGCCAACCCAAAGCGGTGCAGCGTGCAA
TACCTGGGGCGACGCCTCCGCGTGGAGTGGCATACATCGACCGGCACTCG
ATCCAAAAGATAGCAAAAACAGAAGCTTTCACCGTCGCGGAAGTCCTCTC
TACTGCCTTTGATTCCCACTGTCACAATCCGAGTCAGCAGTACCCAAGTC
CCGAGGGATTGCAAGGTGCCCAACACAGCTCAGCGGAGCTGCTCTTAAGC
GCAGCAGGATTAAGGGGCGTCCGCGACAGACCTTGCAGAGATCTGTCCAG
GGGGCAGCTGTTGTGCCTCGTGCTTTGTATTGGGGTGGCGCATGCGCTTG
CTGAGCGAGAAACCAGTGGGAGCCTTTGGAGATTCGGAGAGCTCGCAGCG
AGAGAAGAATGTGGGTTTGGGAAAAAACGAAAAAAATCTTACTCAGACAC
GTAAAGGTACTTTGGTTGGGTTCAACCCGATATGTAATTATTTTGGGAAA
ATGGAATGTGTTCAATCAAAACACCACCAAATATGAAGTGGAAGCTTCTG
GCAGGCGTTCAAATTACTTGATTTTACTCTGAAAGGTAAAGCCAAAATAT
CTGGGTCACACATGTGAACATGATGGGCTGGACCTTATACTTGTCGCGGT
ACCACTTCGCGGTAATGTACTCCGAAGGACTCTAGGCATACCAATCGAGG
TTGATTTCACCGTGATCATATTTACGGTGCGAACCACGAGGGAGCTTTAA
GAACCTCGACAGATTTAGGTGCTTCCCTCGGCGCCCTGCTCTGCATTCGA
AATGATTCCTAGTGCTTGCTTATTTAAACGTTTGTCGTGATAGCTTGTTA
TTTGGCGCCATCTATTCGCGTAGGTGTCGAATGCGAGGGTGGGGACGTCC
CGGCACCGGTGCTCTGCCTGGACGAGTTCCTCGAAGTCGAAGATGCTCGC
GTGAGGCGAGGCGTCGAAAACGCGTGCGCAAGGCTAAACTCGTTGGGAGT
GACCATAGTTTTTGCTACTCACGTGATGGATCACGTCGAGGGTATGCTCA
CTTCGACGGCGGGTTGGCCATCAGATAAAGCAAGCCATACCCGCAGCGGA
AGCAATAGTGGCGGGGGAGGAAGGGTGGTCACGTTCACCGAGGCACGAGC
CAACGAGCCGTGCCGTTTGGAGGCGTGCGCGTACGTCGAATGGAAGAGAT
CGGAGGATGCGGACCGTCAAGCTCGGAGGCTGATGTGATACCAGGGGGAA
GTATTATATAGCAAAGTATATCTGCGGTATGGTCGCGAGAACAACCCTCC
CACCTCCCATCAGGCTGTCCTGCTTATTTGGGAAGACGCGTAGAAGGCGG
CTTCTGTTCTAAAGGGGTTTCCACTGGATTTGTCCTCTTGTAGTTTGTGG
CTATGGATCCCCACCGGTCATGTATCGCTCCCTGTTGGTCATGTCGTGTC
TCTGCTTGGAGTGCCTTTGGCTGCGAATGATTTTATCATGAGTCGAGTGG
CTGCGGTATCGTCCCCACCAAACACAGCTGACCCCCCCAGACTTGGTCAC
CAACCATTGGAGAGCGCCCCCAGTGTGACCAATTTGGGCGCTAATCACGG
TACATACGCGTGACCATCCTTCGTAACTTATAGAACAACTCTTGGTGTAC
AAGTCGTGGGTGGTTTTAGTTTGATCACTCCAACCCAGGTGATGAACAGT
GATATACGGTAGACGTTATATCGAAGAGAGCGTCAGTTGTTGTGAGAACG
CCGACGCCATTCCTCCTTTCTCGGTTCTTTCTTCTCCAACACTGAGGACT
ATTCAAGCTATTTGCACCGTTAAACGCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig884:283385..285263+

>mRNA_A-nodosum_M_contig884.17.1 ID=mRNA_A-nodosum_M_contig884.17.1|Name=mRNA_A-nodosum_M_contig884.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=783bp|location=Sequence derived from alignment at A-nodosum_M_contig884:283385..285263+ (Ascophyllum nodosum dioecious)
ATGTTTGCCTCTTCGACGATTGACGGTGTCGGCCAACCCAAAGCGGTGCA
GCGTGCAATACCTGGGGCGACGCCTCCGCGTGGAGTGGCATACATCGACC
GGCACTCGATCCAAAAGATAGCAAAAACAGAAGCTTTCACCGTCGCGGAA
GTCCTCTCTACTGCCTTTGATTCCCACTGTCACAATCCGAGTCAGCAGTA
CCCAAGTCCCGAGGGATTGCAAGGTGCCCAACACAGCTCAGCGGAGCTGC
TCTTAAGCGCAGCAGGATTAAGGGGCGTCCGCGACAGACCTTGCAGAGAT
CTGTCCAGGGGGCAGCTGTTGTGCCTCGTGCTTTGTATTGGGGTGGCGCA
TGCGCTTGCTGAGCGAGAAACCAGTGGGAGCCTTTGGAGATTCGGAGAGC
TCGCAGCGAGAGAAGAATGTGTCGAATGCGAGGGTGGGGACGTCCCGGCA
CCGGTGCTCTGCCTGGACGAGTTCCTCGAAGTCGAAGATGCTCGCGTGAG
GCGAGGCGTCGAAAACGCGTGCGCAAGGCTAAACTCGTTGGGAGTGACCA
TAGTTTTTGCTACTCACGTGATGGATCACGTCGAGGGTATGCTCACTTCG
ACGGCGGGTTGGCCATCAGATAAAGCAAGCCATACCCGCAGCGGAAGCAA
TAGTGGCGGGGGAGGAAGGGTGGTCACGTTCACCGAGGCACGAGCCAACG
AGCCGTGCCGTTTGGAGGCGTGCGCGTACGTCGAATGGAAGAGATCGGAG
GATGCGGACCGTCAAGCTCGGAGGCTGATGTGA
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