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Homology
BLAST of mRNA_A-nodosum_M_contig883.30.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE) HSP 1 Score: 192 bits (487), Expect = 6.720e-47 Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 1270 QELPGCPYPGHANVSWVCWGCDGARHHLKTRAAMEPLKRTHGFKVHRVPNDGDCFYSSIKAAVEPESPGKNKKGAGAVPARG--VTVAEMRAWVAEEMGDEQLAFYTLQAKANPEDRWLDFVRPLAERIPSDEE 1665
++LP CPYPGH NVSW C C GA+HHL +R+AMEPL+R HGFKVHRVPNDGDCF+SSIKAA+ + +G GA G +TV +MR WVAEEMG +QL FY LQA ANPEDRWLDFVRPL +RIPSD+E
Sbjct: 252 EQLPPCPYPGHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDE 385
BLAST of mRNA_A-nodosum_M_contig883.30.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI) HSP 1 Score: 138 bits (348), Expect = 7.380e-31 Identity = 155/428 (36.21%), Postives = 179/428 (41.82%), Query Frame = 1
Query: 1369 MEPLKRTHGFKVHRVPNDGDCFYSSIKAAVEPESPGKNKKGAGAVPAR-----GVTVAEMRAWVAEEMGDEQLAFYTLQAKANPEDRWLDFVRPLAERIPSDEEVEDDVEQEKRTSTRVASNASNR---------------------------------FPERAANVDEPSDQRSSCEDRGGKGRTDRGRGLGRKKTTPLKGRTLLAEEKSLKEITPTDCPRATTASI-----GKAGRPGR--RSRMGRGSTDLETVAK------------------------------------------KATSPKKPPTRKSARVGRHAQLSCKKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPFVRSVDELRQFVRLEGSLVGHGRCMWADTFAHHVVSRRLGLTILFVDMVR--KAW 2385
MEPL+R HGFKVHRVPNDGDCF+SSIKAA+ + +G A +TV +MR WVAEEMG +QL FY LQA ANPEDRWLDFVRPL +RIPSD+E S T G+ G+K P RT A++ P D AT A++ + R R R R GRG + KATSP+ RVG XXXXXXXXXXXXXXXXX LP V +V+ELR+FVRLEGS VGHG CMWADT AHHVVSRRL +TILFVDM R +AW
Sbjct: 1 MEPLQRAHGFKVHRVPNDGDCFFSSIKAALPDGVAAERARGGXXXXAADCAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDEXXXXXXXXXXXXXXXXSYRGETEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSGQPEGKK---PTSRRTAKADDTDA----PEDSECATLAAVVSPPSASSDRNARYLRRREGRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKATSPR--------RVGEEGS------------GXXXXXXXXXXXXXXXXXETEAVGWRWENEVEEENEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAW 401
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3116 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 4 |
| Cds size | 2397 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870295.2977529-UTR-A-nodosum_M_contig883:254918..255550 | 1680870295.2977529-UTR-A-nodosum_M_contig883:254918..255550 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig883 254919..255550 - |
| 1680870295.3691587-UTR-A-nodosum_M_contig883:258909..258996 | 1680870295.3691587-UTR-A-nodosum_M_contig883:258909..258996 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig883 258910..258996 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870295.3127384-CDS-A-nodosum_M_contig883:255550..255653 | 1680870295.3127384-CDS-A-nodosum_M_contig883:255550..255653 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig883 255551..255653 - |
| 1680870295.3240924-CDS-A-nodosum_M_contig883:255937..256702 | 1680870295.3240924-CDS-A-nodosum_M_contig883:255937..256702 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig883 255938..256702 - |
| 1680870295.338877-CDS-A-nodosum_M_contig883:256928..257143 | 1680870295.338877-CDS-A-nodosum_M_contig883:256928..257143 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig883 256929..257143 - |
| 1680870295.3576982-CDS-A-nodosum_M_contig883:257595..258909 | 1680870295.3576982-CDS-A-nodosum_M_contig883:257595..258909 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig883 257596..258909 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig883.30.1 >prot_A-nodosum_M_contig883.30.1 ID=prot_A-nodosum_M_contig883.30.1|Name=mRNA_A-nodosum_M_contig883.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=799bp
MLKRHAPSRRPGSVSASAPLRSASNAMTSPNPKRPKPNPPIFDVAATNAA TPRPNLQDRGEGPRIAGQKCEGDSPQMMDQGRSRLQTLNLSSIGGELLQR SSDVAANVGGPSSLTAVEGNQNQSEGTSSRVFRRWCDESAVIADSKTITE SSVLLASSKVLVEGDALAETTALCESLKITPTAVRPVRRVKRRQQHPGGD WRVISTSSARGGTRIRVESDASSSERSLEKAGENDHPVQRFVENIFTSCG TNQQQRDGPDDGNVSLPESLPALVSAAAVEGKVTGSGVGISLESIAMEPS SQKVAKSTKVAATAEESGSVVSVDDPSETRKNSIVDVAPLAPGKLLAKKI EHASRRSRRMPRETHNSLRRTEVPAATTKPADVRQSEKQRSEVLQELPGC PYPGHANVSWVCWGCDGARHHLKTRAAMEPLKRTHGFKVHRVPNDGDCFY SSIKAAVEPESPGKNKKGAGAVPARGVTVAEMRAWVAEEMGDEQLAFYTL QAKANPEDRWLDFVRPLAERIPSDEEVEDDVEQEKRTSTRVASNASNRFP ERAANVDEPSDQRSSCEDRGGKGRTDRGRGLGRKKTTPLKGRTLLAEEKS LKEITPTDCPRATTASIGKAGRPGRRSRMGRGSTDLETVAKKATSPKKPP TRKSARVGRHAQLSCKKKRCKEETQKEEAGANEIHAEKEGEEDHSDDEGS DDDDGVSDDGALPFVRSVDELRQFVRLEGSLVGHGRCMWADTFAHHVVSR RLGLTILFVDMVRKAWREQLIRVAMESKSDLSSSNENPTTSSSSKRCP* back to topmRNA from alignment at A-nodosum_M_contig883:254919..258996- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig883.30.1 ID=mRNA_A-nodosum_M_contig883.30.1|Name=mRNA_A-nodosum_M_contig883.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4078bp|location=Sequence derived from alignment at A-nodosum_M_contig883:254919..258996- (Ascophyllum nodosum dioecious) CAGCTTCTCATGTGATTTCGGTTGGGATTTCCAGGTATTATTGTTCCAAC
TGGGGTGAGCTCTTGCAAAGCAACGTTAAAGCGTGCCATGCTGAAACGTC
ACGCGCCTTCACGAAGACCAGGGTCCGTAAGTGCGTCGGCGCCTCTCCGG
TCTGCCTCCAACGCGATGACTTCGCCGAACCCTAAACGACCCAAACCAAA
TCCACCAATTTTTGATGTTGCTGCAACCAATGCTGCGACACCGCGTCCCA
ACCTCCAAGACCGCGGTGAAGGCCCGCGCATCGCTGGTCAGAAGTGTGAG
GGGGATTCACCGCAAATGATGGATCAAGGCCGGAGTCGACTTCAGACTCT
CAACCTCTCTTCTATCGGGGGGGAGTTGCTACAGCGCTCCTCCGACGTCG
CGGCAAATGTTGGCGGACCATCCTCCCTCACAGCAGTCGAGGGTAATCAG
AATCAGAGCGAGGGGACCTCGTCGAGGGTATTCCGCAGGTGGTGTGACGA
ATCGGCAGTGATCGCTGATTCTAAAACTATAACAGAAAGTTCTGTTTTGC
TGGCGTCCAGCAAGGTGTTGGTCGAAGGCGACGCTTTGGCAGAGACGACT
GCGTTGTGCGAAAGCCTAAAAATCACGCCAACAGCAGTAAGGCCAGTGAG
GCGCGTCAAACGGCGTCAGCAACACCCTGGTGGTGACTGGAGGGTGATTT
CAACCAGCTCTGCTCGCGGCGGGACCAGAATCAGGGTAGAAAGTGACGCA
TCGTCGAGTGAGAGATCCTTGGAGAAGGCCGGGGAGAATGATCACCCGGT
CCAAAGATTTGTCGAAAACATCTTCACAAGTTGTGGCACGAATCAGCAGC
AGCGGGATGGTCCTGACGATGGTAATGTCAGTCTACCAGAGTCGCTGCCG
GCGCTGGTGTCTGCAGCAGCAGTAGAAGGGAAGGTAACAGGGTCAGGCGT
CGGAATATCTCTAGAGTCAATTGCGATGGAGCCTTCGAGCCAAAAGGTGG
CGAAATCGACTAAGGTTGCCGCGACGGCGGAAGAATCAGGATCAGTCGTT
TCTGTTGATGATCCGAGCGAAACTCGTAAGAACTCGATCGTCGACGTTGC
ACCACTGGCACCAGGAAAGTTGTTGGCGAAAAAGATAGAGCATGCTTCCA
GACGATCGAGGAGGATGCCAAGGGAAACTCATAATTCATTGCGAAGAACG
GAGGTTCCAGCGGCGACGACGAAGCCGGCGGATGTGCGGCAATCGGAGAA
GCAGAGGAGCGAGGTGCTGCAAGAGTTACCCGGCTGCCCTTACCCGGGAC
ACGCCAACGTTTCGTGGGTGTGTTGGGGGTGTGATGGAGCCAGACACCAC
CTGAAAACGCGCGCAGCTATGGAGCCGCTGAAGAGGACGCACGGCTTCAA
AGTGAGACTTGGTTGCTCTTCAATGATAGCCTCACGAACTGATCGAATCG
TTTTCACCTTGCCATAGTTCGCTGCGATATTTTCGTTATAGATGTACTAG
AATGAAACGACGACTGTTTCAACGCACACGATACGAAGGAGAAAGTCCGG
GTACGGGGTGTGACCAAGCGAGGGTGCTTCTCCTGCAGAAAGGCGTCGAG
TGCACGTACAAAGGGTTTTTCGACAGTCGTTTTCCCTTAGGCAAAACTTG
ATCGTGCCGACGTTGTACCTCTCAATTTGCAACCATGCCATGCACAGAAG
CCATCGAACGTACTAAACAATCCTCCTGCGCATGTTCGTCCCCGGAAATG
CAGACATGCTAGAAACGGAAATGCAAATATACCACGAGAGTGTTTGCGTT
ATGAAAATGAAGGGAAGCCGTACGCTTTGAAACCCTTCTGTCTATGCGCA
TAGGTGCACCGCGTTCCGAACGACGGCGACTGCTTCTACTCGTCGATAAA
GGCCGCGGTAGAGCCGGAGAGCCCAGGGAAAAATAAGAAAGGGGCCGGGG
CGGTGCCGGCACGGGGGGTGACCGTAGCGGAGATGCGCGCGTGGGTAGCG
GAGGAGATGGGAGACGAGCAGCTTGCATTTTACACCCTCCAGGCCAAGGC
AAATCCTGAGGACCGATGGTGAGCTCTCCTCCTGTTGGCATCTGTATTTT
GAGCATACTCTTCAGCTATTAACTATAAATATTTTTTGAGCATTATCTTC
ACCCATTAACTGTATTTTGAACCTACTGTTCTGATATCATACCCTCAGAG
CGCACTTATGTATGCCATATTTTTTATCGTTAGTGGTTCATAGTATCGCG
AACCGGTAAAATCGACGCGTGCTATTGCGGCCGTCTGCCACCAGGCTGGA
TTTCGTTCGGCCCCTGGCCGAACGCATCCCAAGTGATGAGGAAGTGGAGG
ACGACGTGGAGCAGGAGAAAAGAACTTCAACGCGCGTTGCATCGAACGCT
TCCAATCGCTTCCCCGAACGGGCGGCAAACGTGGACGAACCAAGTGACCA
GCGTAGCTCCTGCGAGGACAGGGGCGGGAAAGGACGAACGGACAGGGGCA
GGGGCTTGGGCAGAAAAAAAACTACCCCGTTGAAGGGCAGGACGTTGCTC
GCGGAGGAAAAATCGCTGAAGGAGATAACTCCAACTGACTGCCCACGTGC
GACCACGGCGAGCATAGGCAAGGCTGGTCGTCCTGGACGACGCAGCAGAA
TGGGAAGGGGATCGACGGATTTGGAGACGGTGGCCAAAAAGGCGACGTCG
CCGAAGAAACCTCCCACCCGCAAGAGTGCAAGAGTAGGAAGACACGCCCA
GCTCTCTTGTAAAAAAAAGAGGTGCAAGGAAGAGACGCAGAAAGAGGAGG
CGGGAGCAAACGAAATACACGCGGAGAAAGAGGGAGAAGAGGATCACAGC
GATGACGAAGGCAGCGACGATGATGATGGCGTGAGTGATGACGGTGCTCT
CCCGTTTGTGCGGTCGGTGGACGAGCTTCGACAATTCGTTCGCCTGGAAG
GATCGCTTGTGGGCCACGGAAGATGCATGTGGGCGGACACGTTCGCTCAC
CACGTGGTTTCACGACGGTTGGGCCTCACCATCCTCTTCGTCGATATGGT
GCGTAAAGCTGTTGGCTCAAGGAATCGTCTGCTGTCCTAGACTATATAGT
AATCCTCCAGTTTTTGGTGGACGGGTAGGAGAGGCAGATGGTTGGTGTTG
AGGTCATGTAAGTTGGCCTAGTGTTCCATCCGATCTATAGGTCTGTGGTG
CCTACGCTGTCGGGACAACTTATATTTAAGTATTCATCCCCACAAAACAT
GATTGTGTTTGCGGCCATCCCCCCTCCGTCGCCTGCGGTCCTACGTCCCA
CCCCCTTCAGGAGCGGGCGAAAACCGCATGGCCATATCGTGTGCTGGCGC
GAACAGTTGATCAGGGTGGCGATGGAGTCGAAGAGCGATTTGTCGTCCTC
AAACGAGAACCCAACCACTTCGTCCTCATCAAAACGTTGCCCCTAGTTAT
CCACGACAAGGCGATCGGTGCGCCAGCATCGGCGATGAAAGGACAGGCAT
GTTTCCGCCGTTCTGAGCTTCCGGACGTTGTGAGAAGGCTCTGGCAGATC
GAGAAATCGCCTTGAACGCCGGCCATTTTGATGGTGCTAGTACTGTCGAG
TGAGTAGGCTAAGAGAGTCGTTTTGTGTATAGTATAAAAAGAGCGGTCGG
CCACTCATCGAAAGTCGTGGTGTGAAAGAAGTACTCGAATGTGTCGTACA
CCGGAAAAGAGTGTTAAAACCTTGAGATAGACCCCACTTATCTTCAAAGC
CTTCAGAGCGTTGCCTCATGTTGGATATCTTACGATTCTTTCGTTCAAGA
CTTGTCTCCAATAGTTATTTGTAACCTGGAGGTACGTCGTTCGGCGCGAG
GGCGCTAAGCCCTAGCCATACCGTAGAAGTTGGGTTTGTTGCAGAGGCTT
GGCCTAGCCTTCGACCCGCATCAGCCAAGGGACTTAAGTGGCTCCTGGCG
CGAAAGGTGTACCCGGTTTTTGTCTGTGGCTCTATACAATCCTTCGGTTC
TTGCCTTTCAGGAACTCCTGAAGATGAAGCTCATCATCGGCGCGCATCCA
GGATCAGAGCTGGGTGGGCATTGTATTA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig883:254919..258996- >mRNA_A-nodosum_M_contig883.30.1 ID=mRNA_A-nodosum_M_contig883.30.1|Name=mRNA_A-nodosum_M_contig883.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2397bp|location=Sequence derived from alignment at A-nodosum_M_contig883:254919..258996- (Ascophyllum nodosum dioecious) ATGCTGAAACGTCACGCGCCTTCACGAAGACCAGGGTCCGTAAGTGCGTC GGCGCCTCTCCGGTCTGCCTCCAACGCGATGACTTCGCCGAACCCTAAAC GACCCAAACCAAATCCACCAATTTTTGATGTTGCTGCAACCAATGCTGCG ACACCGCGTCCCAACCTCCAAGACCGCGGTGAAGGCCCGCGCATCGCTGG TCAGAAGTGTGAGGGGGATTCACCGCAAATGATGGATCAAGGCCGGAGTC GACTTCAGACTCTCAACCTCTCTTCTATCGGGGGGGAGTTGCTACAGCGC TCCTCCGACGTCGCGGCAAATGTTGGCGGACCATCCTCCCTCACAGCAGT CGAGGGTAATCAGAATCAGAGCGAGGGGACCTCGTCGAGGGTATTCCGCA GGTGGTGTGACGAATCGGCAGTGATCGCTGATTCTAAAACTATAACAGAA AGTTCTGTTTTGCTGGCGTCCAGCAAGGTGTTGGTCGAAGGCGACGCTTT GGCAGAGACGACTGCGTTGTGCGAAAGCCTAAAAATCACGCCAACAGCAG TAAGGCCAGTGAGGCGCGTCAAACGGCGTCAGCAACACCCTGGTGGTGAC TGGAGGGTGATTTCAACCAGCTCTGCTCGCGGCGGGACCAGAATCAGGGT AGAAAGTGACGCATCGTCGAGTGAGAGATCCTTGGAGAAGGCCGGGGAGA ATGATCACCCGGTCCAAAGATTTGTCGAAAACATCTTCACAAGTTGTGGC ACGAATCAGCAGCAGCGGGATGGTCCTGACGATGGTAATGTCAGTCTACC AGAGTCGCTGCCGGCGCTGGTGTCTGCAGCAGCAGTAGAAGGGAAGGTAA CAGGGTCAGGCGTCGGAATATCTCTAGAGTCAATTGCGATGGAGCCTTCG AGCCAAAAGGTGGCGAAATCGACTAAGGTTGCCGCGACGGCGGAAGAATC AGGATCAGTCGTTTCTGTTGATGATCCGAGCGAAACTCGTAAGAACTCGA TCGTCGACGTTGCACCACTGGCACCAGGAAAGTTGTTGGCGAAAAAGATA GAGCATGCTTCCAGACGATCGAGGAGGATGCCAAGGGAAACTCATAATTC ATTGCGAAGAACGGAGGTTCCAGCGGCGACGACGAAGCCGGCGGATGTGC GGCAATCGGAGAAGCAGAGGAGCGAGGTGCTGCAAGAGTTACCCGGCTGC CCTTACCCGGGACACGCCAACGTTTCGTGGGTGTGTTGGGGGTGTGATGG AGCCAGACACCACCTGAAAACGCGCGCAGCTATGGAGCCGCTGAAGAGGA CGCACGGCTTCAAAGTGCACCGCGTTCCGAACGACGGCGACTGCTTCTAC TCGTCGATAAAGGCCGCGGTAGAGCCGGAGAGCCCAGGGAAAAATAAGAA AGGGGCCGGGGCGGTGCCGGCACGGGGGGTGACCGTAGCGGAGATGCGCG CGTGGGTAGCGGAGGAGATGGGAGACGAGCAGCTTGCATTTTACACCCTC CAGGCCAAGGCAAATCCTGAGGACCGATGGCTGGATTTCGTTCGGCCCCT GGCCGAACGCATCCCAAGTGATGAGGAAGTGGAGGACGACGTGGAGCAGG AGAAAAGAACTTCAACGCGCGTTGCATCGAACGCTTCCAATCGCTTCCCC GAACGGGCGGCAAACGTGGACGAACCAAGTGACCAGCGTAGCTCCTGCGA GGACAGGGGCGGGAAAGGACGAACGGACAGGGGCAGGGGCTTGGGCAGAA AAAAAACTACCCCGTTGAAGGGCAGGACGTTGCTCGCGGAGGAAAAATCG CTGAAGGAGATAACTCCAACTGACTGCCCACGTGCGACCACGGCGAGCAT AGGCAAGGCTGGTCGTCCTGGACGACGCAGCAGAATGGGAAGGGGATCGA CGGATTTGGAGACGGTGGCCAAAAAGGCGACGTCGCCGAAGAAACCTCCC ACCCGCAAGAGTGCAAGAGTAGGAAGACACGCCCAGCTCTCTTGTAAAAA AAAGAGGTGCAAGGAAGAGACGCAGAAAGAGGAGGCGGGAGCAAACGAAA TACACGCGGAGAAAGAGGGAGAAGAGGATCACAGCGATGACGAAGGCAGC GACGATGATGATGGCGTGAGTGATGACGGTGCTCTCCCGTTTGTGCGGTC GGTGGACGAGCTTCGACAATTCGTTCGCCTGGAAGGATCGCTTGTGGGCC ACGGAAGATGCATGTGGGCGGACACGTTCGCTCACCACGTGGTTTCACGA CGGTTGGGCCTCACCATCCTCTTCGTCGATATGGTGCGTAAAGCCTGGCG CGAACAGTTGATCAGGGTGGCGATGGAGTCGAAGAGCGATTTGTCGTCCT CAAACGAGAACCCAACCACTTCGTCCTCATCAAAACGTTGCCCCTAG back to top
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