mRNA_A-nodosum_M_contig8807.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8807.1.1
Unique NamemRNA_A-nodosum_M_contig8807.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 8.910e-38
Identity = 75/110 (68.18%), Postives = 88/110 (80.00%), Query Frame = 1
Query:  106 DDGTVAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            DD TV+KLRPK AVT+ E  SV  VC+ +  ARNDAALLTG  GGMTGI+TAID +RRVVAV +DP++T+A EVMTPNPT+V +E  AMEAL IML RHFRHLPVR+  G
Sbjct: 1490 DDVTVSKLRPKPAVTVPEGMSVTEVCKVMANARNDAALLTGAGGGMTGIITAIDCIRRVVAVSVDPNSTAASEVMTPNPTTVLSEDSAMEALSIMLGRHFRHLPVRTPRG 1599          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A836CBL7_9STRA (Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.390e-24
Identity = 59/106 (55.66%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  118 VAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            VA LRPK  +TMA D  +  V  A+   R DA LL    G ++GI+T +DL  RVVA G+DP  TSA +VMT +P  V AE  AMEALG+M+ER FRHLPVRS DG
Sbjct: 2600 VAALRPKRPLTMASDALLVHVAEAMAAKRADACLLVASDGALSGIVTDVDLTVRVVAGGVDPYATSAADVMTRDPRCVGAEDSAMEALGVMVERRFRHLPVRSGDG 2705          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A7S1B5L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5L5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.840e-23
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  106 DDGTVAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            +D  V+KLRP+  +  +   +V +V + L + R DAALLTG RGG+ GI+T  D+ RR+VA   DP +TSA ++MTPNP  VS +  AM+AL  M+E HFRHLPV    G
Sbjct:  252 NDKIVSKLRPRKPMIGSSSDNVLSVVQMLCRKRGDAALLTGSRGGLVGILTDTDITRRLVAQHKDPSSTSASDIMTPNPKVVSMDDSAMDALACMIENHFRHLPVVDSSG 361          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A7S1B5S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5S0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.290e-23
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  118 VAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            V+KLRP+  +  +   +V +V + L + R DAALLTG RGG+ GI+T  D+ RR+VA   DP +TSA ++MTPNP  VS +  AM+AL  M+E HFRHLPV    G
Sbjct:  179 VSKLRPRKPMIGSSSDNVLSVVQMLCRKRGDAALLTGSRGGLVGILTDTDITRRLVAQHKDPSSTSASDIMTPNPKVVSMDDSAMDALACMIENHFRHLPVVDSSG 284          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A7S0GJB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJB2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.950e-23
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  103 SDDGTVAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPV 420
            SD+  V+KLRPK     + D S+  V + L+  R+DAAL+ G  GG+ GIMT +D+ RRVVA  +D  +   + VMTPNPT V+    AM AL IM++ HFRHLPV
Sbjct:    6 SDERPVSKLRPKKPNIASVDDSILKVTQMLSSKRSDAALIMGRDGGLAGIMTDVDITRRVVAQRLDASSAIVEMVMTPNPTCVTMSDSAMSALSIMVDNHFRHLPV 111          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A7S2PMW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMW1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.740e-22
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  118 VAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            V+KLRPK  +  + + S+  V R L   R DAAL+T   GG+ GI+T  D+ RRVVA  I+P++TS   VMT NPT V+    AM+ALG M+E HFRHLPV   +G
Sbjct:   25 VSKLRPKKPLISSSNDSILEVTRMLASKRGDAALITSANGGLAGIITDTDVTRRVVAKYIEPESTSISSVMTANPTCVAMSDSAMDALGTMVENHFRHLPVVDDNG 130          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A7S1VMX7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMX7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.070e-21
Identity = 55/107 (51.40%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  115 TVAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            TVAKLRPK  V  A + SV ++ + L K R DAAL+    G ++GIMT  D+ RRVVA  + P +T  ++ MTPNPT V  +  AMEALGIM+E+ FRHLPV    G
Sbjct: 1833 TVAKLRPKKPVQAACEDSVLSLSQMLAKRRGDAALIVSATGRLSGIMTDKDVCRRVVAKRMMPVSTLVQDAMTPNPTCVRLQDSAMEALGIMIEKRFRHLPVVDEHG 1939          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A7S2BCV6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BCV6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.640e-19
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  106 DDGTVAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            ++ +VAKLRPK  V ++ D+S+  V +A+   R D+ LLT   G + GI+T+ D++R+VVA   DPD    +++MT  P  V  E  A++AL +M++ HFRHLPV   DG
Sbjct:   68 NERSVAKLRPKKPVVLSSDSSILEVTKAMAAGRTDSVLLTSGDGSLAGIVTSTDMMRKVVATSKDPDD-PVEDIMTKKPKCVCMEDSAIDALIMMMDNHFRHLPVLDSDG 176          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A1Z5JXP4_FISSO (Myosin I n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JXP4_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 8.360e-19
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  103 SDDGTVAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLD 432
            S +  V+ LRP   +   +  SV  V + LT  R  AAL+T   GG+ GI+T  D+ RRVVA+G+ P TT    VMT NP  V+    AM+AL IM+E HFRHLPV   D
Sbjct: 1649 SGEHPVSMLRPMKPLLSTDHDSVLNVAQFLTAKRGVAALITNSTGGLAGIVTDTDITRRVVAMGLSPATTEVSNVMTKNPACVATTDSAMDALTIMVENHFRHLPVVDSD 1758          
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Match: A0A2P4XXW5_9STRA (Myosin-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XXW5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.050e-18
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  118 VAKLRPKAAVTMAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGIDPDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDG 435
            V+KLRP  A+T++E  SVA   + ++ A+ DAAL+ G  GG+ GI+T  D+ RRVVA+G DP   S  + MTP+P  V     AM+A+ +MLE  FRHLPV    G
Sbjct:  612 VSKLRPSKAITISETFSVADAAKEMSVAQTDAALIIGRDGGLLGILTDTDVTRRVVALGNDPFYVSVLDAMTPDPKFVDERDSAMDAMFMMLEGKFRHLPVVDETG 717          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8807.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6N9_ECTSI8.910e-3868.18Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A836CBL7_9STRA1.390e-2455.66Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A7S1B5L5_9STRA1.840e-2349.09Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S1B5S0_9STRA5.290e-2350.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S0GJB2_9STRA6.950e-2349.06Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2PMW1_9STRA1.740e-2250.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1VMX7_9STRA8.070e-2151.40Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2BCV6_9STRA1.640e-1942.73Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1Z5JXP4_FISSO8.360e-1946.36Myosin I n=1 Tax=Fistulifera solaris TaxID=1519565... [more]
A0A2P4XXW5_9STRA1.050e-1847.17Myosin-like protein (Fragment) n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8807contigA-nodosum_M_contig8807:10313..11706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size444
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.46e-38
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size444
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870289.3648586-CDS-A-nodosum_M_contig8807:10312..104501680870289.3648586-CDS-A-nodosum_M_contig8807:10312..10450Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8807 10313..10450 +
1680870289.3786418-CDS-A-nodosum_M_contig8807:11189..113261680870289.3786418-CDS-A-nodosum_M_contig8807:11189..11326Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8807 11190..11326 +
1680870289.4498672-CDS-A-nodosum_M_contig8807:11537..117061680870289.4498672-CDS-A-nodosum_M_contig8807:11537..11706Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8807 11538..11706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8807.1.1prot_A-nodosum_M_contig8807.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8807 10313..11706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8807.1.1

>prot_A-nodosum_M_contig8807.1.1 ID=prot_A-nodosum_M_contig8807.1.1|Name=mRNA_A-nodosum_M_contig8807.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=148bp
MTPVTAVTTPQRVASVASVRSAASVRSTSSPSAPSDDGTVAKLRPKAAVT
MAEDTSVAAVCRALTKARNDAALLTGPRGGMTGIMTAIDLVRRVVAVGID
PDTTSAKEVMTPNPTSVSAESGAMEALGIMLERHFRHLPVRSLDGWR*
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mRNA from alignment at A-nodosum_M_contig8807:10313..11706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8807.1.1 ID=mRNA_A-nodosum_M_contig8807.1.1|Name=mRNA_A-nodosum_M_contig8807.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at A-nodosum_M_contig8807:10313..11706+ (Ascophyllum nodosum dioecious)
ATGACACCAGTAACAGCGGTTACAACCCCCCAGCGTGTGGCCTCGGTGGC TTCGGTGAGATCGGCGGCCTCAGTGAGATCGACGAGCTCACCCAGTGCAC CCAGTGACGATGGTACGGTGGCGAAGCTCCGGCCGAAGGTACAAGGACAG TGTTGTACTAGTAGTGGCGCAGGTTTGGCGCTCGGTCGAGGTATTAATAG TTCCTCCACCACCTCCGTAGTGCTTTTTTCGCCTTATTAATATCAATATA ATAGTTTGATCCGAGACATGAGACATACAGTAGACATGCTGTGACAGTTT GTTCGTGGTCGAGACATGATCAAGAAGCACGTTTGATCGAGACGTAGACC CGTGTTCCCAGAGGGATCGAGTTCCGTGGGCCCTTTGAAAATGACGAGAC AGTACACAAGAAAAGGAAGAACGGACGTATTAATAGGAGTATACTATTAA TTTCATACTATTTTTAGAGTACACTGTCGTACACTAGGAATCAACAACGC CCGTGTGTGGTAGGTCCCCAACCGCCAAAAATACCGTATGTCTTGAGTTG TAGGAAACGATAAGAAGACCTGGCTGGTGTCAGCTTGTCTTTTCACTAAA AAAAGTTGTAATGTAACTACGGTAGTTCTTAGTTCATTTCATATTAGATC GTCTTTCAGCTTTGTCTACTATTGTAATTATTCTGCTCATGGGTCCCCCC GATTTCTTATCTAGAGCTTCATGAGGTATACCGAATACCGAATACCGAAT ACCGCAGAAGGATAGCAGGGAGCTAGCTATCAATAGAGCTCTAGTGTTAC TGCAAGTGTTGGTATTTTACAAAAACAACACTGACGATGAAGAGCTCGCG TGGGCGTTTGGTTGGGTGATGGAACAGGCGGCCGTGACGATGGCAGAAGA CACGTCGGTGGCGGCAGTGTGCAGGGCGCTGACGAAGGCGAGGAACGATG CCGCTCTCTTGACGGGACCGAGGGGTGGCATGACGGGCATCATGACCGCA ATCGACCTCGTCAGGTAACAAAAATGTGATATCTCAGTAGCGGAGCATGC GTGTAACATCTCTCGCACGAGGCACCGAACTAGCTAGGGTCGAGCCGTTG ACTGTACACCGGAACGCGGACCGCCGCCACAATCTTTGTTGGGAGCGCAT CGTCGTTGTCTGAGGATGCGTTTTTTCACGTGATGGATGGGCCAACCCTG TCGCGCCCGGATTCCTCCGCTCCAGGCGCGTGGTTGCCGTGGGCATCGAC CCGGACACCACGAGCGCGAAGGAGGTAATGACTCCCAACCCCACGAGCGT TTCCGCCGAATCCGGAGCCATGGAAGCCCTCGGGATCATGCTGGAGAGGC ACTTCAGACACCTTCCGGTGCGTTCTCTGGATGGATGGCGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8807:10313..11706+

>mRNA_A-nodosum_M_contig8807.1.1 ID=mRNA_A-nodosum_M_contig8807.1.1|Name=mRNA_A-nodosum_M_contig8807.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig8807:10313..11706+ (Ascophyllum nodosum dioecious)
ATGACACCAGTAACAGCGGTTACAACCCCCCAGCGTGTGGCCTCGGTGGC
TTCGGTGAGATCGGCGGCCTCAGTGAGATCGACGAGCTCACCCAGTGCAC
CCAGTGACGATGGTACGGTGGCGAAGCTCCGGCCGAAGGCGGCCGTGACG
ATGGCAGAAGACACGTCGGTGGCGGCAGTGTGCAGGGCGCTGACGAAGGC
GAGGAACGATGCCGCTCTCTTGACGGGACCGAGGGGTGGCATGACGGGCA
TCATGACCGCAATCGACCTCGTCAGGCGCGTGGTTGCCGTGGGCATCGAC
CCGGACACCACGAGCGCGAAGGAGGTAATGACTCCCAACCCCACGAGCGT
TTCCGCCGAATCCGGAGCCATGGAAGCCCTCGGGATCATGCTGGAGAGGC
ACTTCAGACACCTTCCGGTGCGTTCTCTGGATGGATGGCGGTGA
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