mRNA_A-nodosum_M_contig8802.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: D7FJT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT4_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.760e-55 Identity = 102/128 (79.69%), Postives = 110/128 (85.94%), Query Frame = 1
Query: 118 GVERPALSELTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQ-EGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDG 498
G RPAL L +E+LTQLR GQR+QKQ R GGSGSGSVV+DVRADPD+VLGLLTKYE YAEMIDTVRECEVFPQ E D RKV V VSRF+LHIRVVMS LR+RNMV+FELDPDCTKAGRAVLRE G
Sbjct: 235 GEGRPALPLLDDEDLTQLRAGQRVQKQTRQGGSGSGSVVVDVRADPDVVLGLLTKYEDYAEMIDTVRECEVFPQGETADSRKVGVMVSRFKLHIRVVMSLLRERNMVQFELDPDCTKAGRAVLREATG 362
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A835ZLE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE1_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.530e-22 Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 127 RPA-LSELTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDGL 501
RPA L ELT EE L G+R+Q+Q R G SG+G VV+DVRAD + +L + Y +MIDTVRE + Q G K E +SRF+L +RV++ + V FELDPDC AG++VL + G+
Sbjct: 16 RPAFLPELTLEEKRTLARGERVQRQTRQGSSGTGLVVVDVRADAATAMEVLQSFAAYGDMIDTVREARILGQRG-GVTKAEFLISRFKLRVRVLLKSNPAASTVEFELDPDCKAAGKSVLNDARGI 140
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A7S1EJW5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EJW5_HEMAN) HSP 1 Score: 82.4 bits (202), Expect = 1.240e-14 Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 145 LTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPD 456
LT EE L G+R+Q+Q RDG G+GSVV+DV+AD V +LT E+Y E I TVR C + + G K + +SRF L I V+ R+ NM+RFELD +
Sbjct: 219 LTPEEEATLLAGERVQRQERDGRVGTGSVVVDVKADISTVFAVLTDLERYVERIHTVRRCTI-TERGAMVAKAQFALSRFNLVINTVLRCDREANMLRFELDKE 321
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A7S2SKJ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKJ0_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.560e-14 Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 115 GGVERPA-LSELTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDG 498
G +PA L L+ E++ L G+ +Q+Q RDG +G+G VV+D+ A P+ V LL +E+Y EMI TVR + P L++ + +S+F L + VV F R R +RF LD + + V+++ DG
Sbjct: 26 GSFSKPAGLPRLSREDIGHLADGKIVQRQTRDGVTGNGFVVMDLEASPETVWSLLLDFERYPEMISTVRSAALRPGSTLERARATFVLSKFLLEVNVVHQFDRRRQQLRFCLD---SASQNFVMKQADG 151
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: W7U413_9STRA (Polyketide_cyc domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U413_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.360e-12 Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 145 LTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDG 498
L++E+L LR GQR+Q Q+R+G GSG VV+DV AD V L +E+YA+MI T+R+ ++ + K T+S+FR + VV + N + F LDPDC + R++L +G
Sbjct: 175 LSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSR-WPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQY-RSILEMAEG 290
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A6S9HUN1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUN1_HETAK) HSP 1 Score: 70.1 bits (170), Expect = 1.180e-10 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2
Query: 491 ATGFFFVESPPDDRPGYSRVWLCAEVDVNRFVPGVIVDYVAGRALPRASNWLKPTCEAAQRKK 679
A GF+F E P ++RVW+ V+VNR VPG +VD A +ALP++SNW+KP EA +R++
Sbjct: 221 AAGFWFAEPAPGREATHTRVWIAGAVEVNRAVPGFVVDLGAQKALPKSSNWVKPVMEAEERRR 283
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A6V1NKI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NKI5_HETAK) HSP 1 Score: 69.3 bits (168), Expect = 1.820e-10 Identity = 35/104 (33.65%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 145 LTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPD 456
LT EE L G+R+++Q R+G +G+G +DV+A + + +L +++Y + IDTVR +VF ++ K E +SRF +R V+++ + ++++F LDP+
Sbjct: 92 LTLEEQKLLANGERVERQTREGKTGTGFACVDVKASQNTIWSVLLDFQRYPDYIDTVRGAKVFEEQS-QTTKAEFLISRFNFPVRTVLTYEEENSLLKFCLDPE 194
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A1E7ESF0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESF0_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 7.390e-10 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2
Query: 491 ATGFFFVESPPDDRPGYSRVWLCAEVDVNRFVPGVIVDYVAGRALPRASNWLKPTCEA 664
A G ++ E PD R G++RV+L A + ++R +P IVDY A RA+PRA+NWLKP EA
Sbjct: 348 AKGTWYTEENPDGRKGFTRVYLLASLQISRALPKFIVDYAAERAMPRATNWLKPEVEA 405
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A7S3K3R6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R6_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.530e-5 Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 2
Query: 497 GFFFVESPPDDRPGYSRVWLCAEVDVNRFVPGVIVDYVAGRALPRASNWLKP 652
GF+ +E P+ G +RVWL A V VP V +DYVA +AL RA+ WL+P
Sbjct: 217 GFWHIEPSPNGN-GLTRVWLAASVQACAVVPNVAIDYVASKALRRATKWLRP 267 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8802.1.1 >prot_A-nodosum_M_contig8802.1.1 ID=prot_A-nodosum_M_contig8802.1.1|Name=mRNA_A-nodosum_M_contig8802.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp MQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPback to top mRNA from alignment at A-nodosum_M_contig8802:167..5049+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8802.1.1 ID=mRNA_A-nodosum_M_contig8802.1.1|Name=mRNA_A-nodosum_M_contig8802.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4883bp|location=Sequence derived from alignment at A-nodosum_M_contig8802:167..5049+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8802:167..5049+ >mRNA_A-nodosum_M_contig8802.1.1 ID=mRNA_A-nodosum_M_contig8802.1.1|Name=mRNA_A-nodosum_M_contig8802.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig8802:167..5049+ (Ascophyllum nodosum dioecious)back to top |