mRNA_A-nodosum_M_contig8802.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8802.1.1
Unique NamemRNA_A-nodosum_M_contig8802.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: D7FJT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT4_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.760e-55
Identity = 102/128 (79.69%), Postives = 110/128 (85.94%), Query Frame = 1
Query:  118 GVERPALSELTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQ-EGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDG 498
            G  RPAL  L +E+LTQLR GQR+QKQ R GGSGSGSVV+DVRADPD+VLGLLTKYE YAEMIDTVRECEVFPQ E  D RKV V VSRF+LHIRVVMS LR+RNMV+FELDPDCTKAGRAVLRE  G
Sbjct:  235 GEGRPALPLLDDEDLTQLRAGQRVQKQTRQGGSGSGSVVVDVRADPDVVLGLLTKYEDYAEMIDTVRECEVFPQGETADSRKVGVMVSRFKLHIRVVMSLLRERNMVQFELDPDCTKAGRAVLREATG 362          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A835ZLE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.530e-22
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  127 RPA-LSELTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDGL 501
            RPA L ELT EE   L  G+R+Q+Q R G SG+G VV+DVRAD    + +L  +  Y +MIDTVRE  +  Q G    K E  +SRF+L +RV++      + V FELDPDC  AG++VL +  G+
Sbjct:   16 RPAFLPELTLEEKRTLARGERVQRQTRQGSSGTGLVVVDVRADAATAMEVLQSFAAYGDMIDTVREARILGQRG-GVTKAEFLISRFKLRVRVLLKSNPAASTVEFELDPDCKAAGKSVLNDARGI 140          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A7S1EJW5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EJW5_HEMAN)

HSP 1 Score: 82.4 bits (202), Expect = 1.240e-14
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  145 LTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPD 456
            LT EE   L  G+R+Q+Q RDG  G+GSVV+DV+AD   V  +LT  E+Y E I TVR C +  + G    K +  +SRF L I  V+   R+ NM+RFELD +
Sbjct:  219 LTPEEEATLLAGERVQRQERDGRVGTGSVVVDVKADISTVFAVLTDLERYVERIHTVRRCTI-TERGAMVAKAQFALSRFNLVINTVLRCDREANMLRFELDKE 321          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A7S2SKJ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKJ0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.560e-14
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  115 GGVERPA-LSELTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDG 498
            G   +PA L  L+ E++  L  G+ +Q+Q RDG +G+G VV+D+ A P+ V  LL  +E+Y EMI TVR   + P   L++ +    +S+F L + VV  F R R  +RF LD   + +   V+++ DG
Sbjct:   26 GSFSKPAGLPRLSREDIGHLADGKIVQRQTRDGVTGNGFVVMDLEASPETVWSLLLDFERYPEMISTVRSAALRPGSTLERARATFVLSKFLLEVNVVHQFDRRRQQLRFCLD---SASQNFVMKQADG 151          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: W7U413_9STRA (Polyketide_cyc domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U413_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-12
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 1
Query:  145 LTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLREGDG 498
            L++E+L  LR GQR+Q Q+R+G  GSG VV+DV AD   V   L  +E+YA+MI T+R+ ++  +      K   T+S+FR  + VV     + N + F LDPDC +  R++L   +G
Sbjct:  175 LSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSR-WPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQY-RSILEMAEG 290          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A6S9HUN1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUN1_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 1.180e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  491 ATGFFFVESPPDDRPGYSRVWLCAEVDVNRFVPGVIVDYVAGRALPRASNWLKPTCEAAQRKK 679
            A GF+F E  P     ++RVW+   V+VNR VPG +VD  A +ALP++SNW+KP  EA +R++
Sbjct:  221 AAGFWFAEPAPGREATHTRVWIAGAVEVNRAVPGFVVDLGAQKALPKSSNWVKPVMEAEERRR 283          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A6V1NKI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NKI5_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.820e-10
Identity = 35/104 (33.65%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  145 LTEEELTQLRLGQRMQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFPQEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPD 456
            LT EE   L  G+R+++Q R+G +G+G   +DV+A  + +  +L  +++Y + IDTVR  +VF ++     K E  +SRF   +R V+++  + ++++F LDP+
Sbjct:   92 LTLEEQKLLANGERVERQTREGKTGTGFACVDVKASQNTIWSVLLDFQRYPDYIDTVRGAKVFEEQS-QTTKAEFLISRFNFPVRTVLTYEEENSLLKFCLDPE 194          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A1E7ESF0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESF0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.390e-10
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  491 ATGFFFVESPPDDRPGYSRVWLCAEVDVNRFVPGVIVDYVAGRALPRASNWLKPTCEA 664
            A G ++ E  PD R G++RV+L A + ++R +P  IVDY A RA+PRA+NWLKP  EA
Sbjct:  348 AKGTWYTEENPDGRKGFTRVYLLASLQISRALPKFIVDYAAERAMPRATNWLKPEVEA 405          
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Match: A0A7S3K3R6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.530e-5
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 2
Query:  497 GFFFVESPPDDRPGYSRVWLCAEVDVNRFVPGVIVDYVAGRALPRASNWLKP 652
            GF+ +E  P+   G +RVWL A V     VP V +DYVA +AL RA+ WL+P
Sbjct:  217 GFWHIEPSPNGN-GLTRVWLAASVQACAVVPNVAIDYVASKALRRATKWLRP 267          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FJT4_ECTSI2.760e-5579.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZLE1_9STRA2.530e-2246.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1EJW5_HEMAN1.240e-1446.15Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2SKJ0_9STRA2.560e-1437.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U413_9STRA2.360e-1239.83Polyketide_cyc domain-containing protein n=3 Tax=M... [more]
A0A6S9HUN1_HETAK1.180e-1047.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1NKI5_HETAK1.820e-1033.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7ESF0_9STRA7.390e-1051.72Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S3K3R6_9STRA2.530e-548.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8802contigA-nodosum_M_contig8802:167..5049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJT4
Model size685
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.68e-48
EggNOG OGs2E0V1@1|root,2S88H@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010240.1
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870289.0222425-UTR-A-nodosum_M_contig8802:166..3521680870289.0222425-UTR-A-nodosum_M_contig8802:166..352Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8802 167..352 +
1680870289.1317105-UTR-A-nodosum_M_contig8802:4967..50491680870289.1317105-UTR-A-nodosum_M_contig8802:4967..5049Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8802 4968..5049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870289.0335925-CDS-A-nodosum_M_contig8802:352..5261680870289.0335925-CDS-A-nodosum_M_contig8802:352..526Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8802 353..526 +
1680870289.1169639-CDS-A-nodosum_M_contig8802:4724..49671680870289.1169639-CDS-A-nodosum_M_contig8802:4724..4967Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8802 4725..4967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8802.1.1prot_A-nodosum_M_contig8802.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8802 353..4967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8802.1.1

>prot_A-nodosum_M_contig8802.1.1 ID=prot_A-nodosum_M_contig8802.1.1|Name=mRNA_A-nodosum_M_contig8802.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
MQKQMRDGGSGSGSVVLDVRADPDMVLGLLTKYEKYAEMIDTVRECEVFP
QEGLDKRKVEVTVSRFRLHIRVVMSFLRDRNMVRFELDPDCTKAGRAVLR
EGDGLLLCGVAARRQAGLLARVVMCRGGREPLRAWGDR*
back to top

mRNA from alignment at A-nodosum_M_contig8802:167..5049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8802.1.1 ID=mRNA_A-nodosum_M_contig8802.1.1|Name=mRNA_A-nodosum_M_contig8802.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4883bp|location=Sequence derived from alignment at A-nodosum_M_contig8802:167..5049+ (Ascophyllum nodosum dioecious)
GAAAGCCTGAACGCGTATTCCGTCTCTGACTCTACGGTTACCACTGTGTC GCCCGTTGCGGCCGAGGAGCTCAGAGCTGGAGCTGGAGCAGAAGTGGCAG TTGCGGTGGAGGTAGGCGGGGTCGAGCGACCAGCGCTGTCAGAACTGACA GAGGAGGAGCTCACGCAGCTCCGCTTGGGGCAAAGGATGCAAAAGCAGAT GCGAGACGGAGGTTCGGGTTCGGGCAGCGTGGTGTTGGATGTACGAGCGG ACCCCGACATGGTACTGGGGCTGCTGACGAAGTACGAGAAGTACGCGGAG ATGATCGACACGGTGCGGGAATGCGAGGTGTTTCCGCAAGAAGGGCTAGA TAAGCGGAAGGTGAAATAAATGAATACATCAGCCAGCGTCCAGCGTGCCT TCAGGCCCTTAGCGTCTCAACTCCTAAGCTGTGGTGATTATGTTTGTCTT GTCTTTGAAAGCCTCAAGAGTATTGTAGTAAAAAAAACACTGCTGCTTCG ACCCCCAATCAAGTGAAGGACTGTCGGAGTTTTGAATCGGTTTTTTGAGT CGCTTGGGTCGACACGTTATACATGTCGGTTCACGCGAATAGCCCCGTCG CAAGGTATATAATGAAAGTAATGCGCGATGAAAAACCGAGACCAATTCTC CTACTGCCGCCTGAGATTTGAGGTGCTGAGGTACATTCGAGAAAATCTCT TAATTTTACTTTATTTCCTGCGTGGACCCAAGATAACCAAATCTCATACG GGTCAACTTGTACCGCACAGTGTATTTGTGTGTGTGTGTGTGTGTGTGTG TGTGTTGTTATTTACATTATACGATCGGGCCTGAACCATACCTAGTAAAA TATGCGGTTGCCGATGCGTAAGTGGTCTGGTGGACAGAAAGCATACACAC ACAGGTACAAAAGTACAAGCAGCATTGCAATGCCGACCTTTGTTCTGTAG GAATAACAATTATGGTTATAGCTCTAATACTACTACTGTAGTGTGTGTGT CTGTGTTTTTTTCCCTTTCATTCTGGACATCAAATTCATTGAACGTACCA GCCGGGGTCACACAGGAGGAAGGTCACACAAGATTTTTCGATTTTTCATC CACCTTCTTTCTGCGGTGTGTGCCTTAATTTTTATAGCGAGAAGGATTCA GCCTTTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTAGTAACGA TTTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTGTCGTTTACTTTTT TTTAGGGAGAAAAATCCCGTTTGCCGGGGTCGAACTCACGTGTCAAAGGG TTACGAGGTACCTCTGAGCTACCGGGGCGACCGGCTTAGTGTAACCGCGC AATCCGGCCCTGTCATCCTAGTCATTGTATGCCACTCGCATTGATCCTCC CAAGAGGGGATCAATGATCAATGTGTGTCTATTTATTAAACCTTTATTAA ATTGCTCATAACCGCGCAATCCGGCCCTGCCATCCTAGTCATTCAATGCG ACTCGCATTGACCGTCCCAAGGGGGGATCAATGATACTTGTTACGAAGTG TGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGCACACAACCGCGCAAT CCGGCCCTGTCATCATATTAATAGTCATTCTATGCCACTGGCATTGATCC TCCCAGGTGTATGTGTGTGTGTGTTCTTTACATTACCCGATCGGGGCTCA ACCATACCCAGTAATAGACGCGGTTGCCAATCCGGTACGTGGTCTGCTGG ACAATAGTAGGTAACAAATGAATGATACATTAATGGTATTTCTGTAACAG TTCAGTTCCTATGGTTCCTCTTCTTGGCGAAAATGTGCGAGAAGTCGATG GGCATCGTACGTTCTTTTCATTATCTATAGCCGGAGATGGTCACGCCCAC ACACATGCGCTATTGATATCAGCGAGAGATTACACGCAACCGTCCCCGCA TGCCGGGTCATTTGCAACAGCAGTACGGTATACTGTACTTGTAGCAGCGG CGGAGGACGAAATAATGAATGAGTCCGTCTATGTACGGGTTATGATGAAG TTAGATACGCTAGTTTTTGGAAAGCCTGAATATAGAAATTGAGTCAATTT TTTCATAGAAGATGATTAAAAAACTTACGGAGTATACTAAGCTATGTAGA AGCTACAGTATGTAATACTGTTAATAAGAAATGAAAAGCTTAACAGTATT GGATTTATCCAAATTATTGGAACAGAAAAAAAGTGTTGGAAATTTAATTT GGAAGAGTTTGGAAGAATTTAAGCGTCAATATTGACGATATCGATTTATT TTCTACCAGTATTAATAGATACACGGATCAAATCTATCTCCTCTTTGTCT TGTAAAATATTATATTTGAAAGAGGAATTAGATCTGGCAGAAGATAATGA TATTGATATGTTTGACATGAATGAACAAAATCATCGTTGTCTTTGTTTGC ATTTCATGAAAAATAGTCTGGTTAAATCTTGTGCTACTAAGACCATATCT TAAAATTCAAAATTCTTGAAAACCGAAATTGGGTGGATTTCGGATTTCGG GCGAACGTCTGCATCCCAGCAAAAAATTATCTTATGGGACTCTGGAAACT GAAAATTAAACAAAGGCGTCATGGAGGCGTACTCGATACGAAATGATTGG TTGAAGAAATACAGAGAGGACGATACGACTTCGGGCAACCCTCTGAGGGG CATGCATTAGACATATGTTTGTGTTCAGACACACACCAGCGGTGTAACCT CCAACATGCTTTCGGCAGGGACAAGCGATGGTTTTTGCTGCTCTCTTACT GCTCTCTTCCACAAAGAACAGAAAAAAAGTATAGGGTCCTCTCCAACTTC AGCACAACAGTTAGTTACGTAATATACGTGTTTATTCAAACAGCCCCTAG TGCTTTACTGTACTGGGGAACGTGGCCTCGACGAAAACCATCTGTTGTAC GTGTAACAACTGCTCTGTGAGTCGCAGCAGCAGTTTAGTTGGAGGCAGAC CCACGTCAAGCCTACTGCCGTAATTCAATCTCTTCCCGCCGCCCGGCGCG CCTTGGTATGGTAAGGTGTACATTTTCTTGAGTAGAGCTATTGAGAACTC TGTGGGCCATGTTGGTACCAACGTGCGAAGTCTCGTGAGTACAAACAAAT GACTGCATCGTGGCAGCGAGAGTGATTCCTGCTGCCAGCGCCCCATCGTT TCCAGCTGGAACCTCCATCACCGAAGGCTTGAGTTTGACTCAGAATCATC CGGGCTGTTGGCCCTAGTTTCTGTGCTACGCGTCGGCGTGTATCGACTCG TTGCTGCTTCTCTGCTCTTTCTGATCTCTTCCACACAGCACAGAAAAAAA CTACTTCGTACTATAGAGCTATACTTGTACTTCAAAGTACAGTTTTTTTA GGTACGTGCGATCCCGGTACGTTTTATACTTGAACAACTCCAAGTGCTTG ACTGGGAAACGTGGTCTCGACGGGAAAAATCTGTTGTGCAAGTATCATAG CCGCTCTGTGAGTCGCAGCAGCAGTTTAGTTGGAGGCAGACATACGTAGA GTCTACTCATGGGATCTCTTCTCGCGGCCCGACGCGCCTTGGTATATTGT TAGGTGTGCATTTTCTTGAGGAGAGGTTTTTAGAACTATGTCGGTCCTGT TGGTACCAAAGTGCGAGGTCTCCGGAGTACAAACAAATAACTGCATCGTG GCAGCGAGAGTGATTCCTGCTGCCAGCGCCCCATCGTTTCCAGCTGTAAC CTCCATCACCGAAGGCTTGAGTTTGACTCAGAATCATCCGGGCTGTTGGC CCTAATTTCTGTGCTACGCGTCGGCGTGTATCGACTCGTAGCTGCTTCTC TGCTCTTTCTAATCTCTTCCACACAGCACAGAAAAAAAACTACTTCGTAC TATAGAGCTATACTACTTGTACTTCAAAGTACAGTTTTTTTAGGTACGTG CGACCCCGGTACGTTTTATACTTGCACAACTCCAAGTTCTTGACTGGGAA ACGTGGTCTCGACGGGAAAAATCTGTTGTGCGAGTGTCATAGCCGCTCTG TGAGTCGCAGCAGCAGTTTAGTTGGAGGCAGACATACGTAGAGTCTACTC ATGGGATCTCTTCTCGCGGCCCGACGCGCCTTGGTATATTGTTAGGTTTG CATTTTCTTGAGGAGAGGTTTTTAGAACTATGTCGGTCCTGTTAGTACCA ACGTGCGAGGTCTCTGGAGTACAAACAAATAACTGCATCGTGGCAGCGAC AGCGATGATACCTGCTGCCGCAGTACGCCATCGTTTCCATCCATAACCTC CATCGCCGAAAGCTTGGAGTTTGGCTCAGAATCACTCGGGCTGCTACTAA GGATCGAAAATGAAGGGACCTCATGGTTTTCTTATGATTCACATCAGCCC AGAACGTCCTCGGCTCTGCTCTGTGCCCGTACCAAGCTCCACGGCGCAAC GTGAGCATGATCGATCGCACATCCAGCAGTCGCTAAAAACACACCTGGTA CTATTCAAGTCTGACCGACTGACTCTCGTGTCCCGCTGCGACGACGTACG TTTGTCAGGTGGAGGTGACAGTCAGCAGATTCCGCCTACACATACGCGTA GTGATGTCCTTCCTGAGGGATCGAAATATGGTGCGGTTCGAGCTGGACCC GGACTGCACCAAGGCGGGTCGCGCGGTACTGCGGGAAGGCGACGGGCTTC TTCTTTGTGGAGTCGCCGCCCGACGACAGGCCGGGCTACTCGCGCGTGTG GTTATGTGCCGAGGTGGACGTGAACCGCTTCGTGCCTGGGGTGATCGTTG ATTACGTCGCGGGCCGCGCGCTGCCTCGAGCCTCGAACTGGTTAAAGCCC ACGTGCGAGGCCGCGCAGCGAAAAAAACTTCGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8802:167..5049+

>mRNA_A-nodosum_M_contig8802.1.1 ID=mRNA_A-nodosum_M_contig8802.1.1|Name=mRNA_A-nodosum_M_contig8802.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig8802:167..5049+ (Ascophyllum nodosum dioecious)
ATGCAAAAGCAGATGCGAGACGGAGGTTCGGGTTCGGGCAGCGTGGTGTT
GGATGTACGAGCGGACCCCGACATGGTACTGGGGCTGCTGACGAAGTACG
AGAAGTACGCGGAGATGATCGACACGGTGCGGGAATGCGAGGTGTTTCCG
CAAGAAGGGCTAGATAAGCGGAAGGTGGAGGTGACAGTCAGCAGATTCCG
CCTACACATACGCGTAGTGATGTCCTTCCTGAGGGATCGAAATATGGTGC
GGTTCGAGCTGGACCCGGACTGCACCAAGGCGGGTCGCGCGGTACTGCGG
GAAGGCGACGGGCTTCTTCTTTGTGGAGTCGCCGCCCGACGACAGGCCGG
GCTACTCGCGCGTGTGGTTATGTGCCGAGGTGGACGTGAACCGCTTCGTG
CCTGGGGTGATCGTTGA
back to top