mRNA_A-nodosum_M_contig880.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig880.15.1
Unique NamemRNA_A-nodosum_M_contig880.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig880.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig880contigA-nodosum_M_contig880:164079..168293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3513
Hectar predicted targeting categoryother localisation
Exons2
Cds size2592
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870286.8543355-UTR-A-nodosum_M_contig880:164078..1646721680870286.8543355-UTR-A-nodosum_M_contig880:164078..164672Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 164079..164672 -
1680870286.8647742-UTR-A-nodosum_M_contig880:165374..1653781680870286.8647742-UTR-A-nodosum_M_contig880:165374..165378Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 165375..165378 -
1680870286.8921242-UTR-A-nodosum_M_contig880:167970..1682931680870286.8921242-UTR-A-nodosum_M_contig880:167970..168293Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 167971..168293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870286.8805544-CDS-A-nodosum_M_contig880:165378..1679701680870286.8805544-CDS-A-nodosum_M_contig880:165378..167970Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 165379..167970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig880.15.1prot_A-nodosum_M_contig880.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig880 165379..167970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig880.15.1

>prot_A-nodosum_M_contig880.15.1 ID=prot_A-nodosum_M_contig880.15.1|Name=mRNA_A-nodosum_M_contig880.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=864bp
MVDVKNRTCRTRGCCSRPFFGVAGTRIAEYCAQHASDGMINVIRRKCINE
SCGIKRSLGVAGTKPAECCAEHAPDGMVDVTSRKCRTEGCVKGPSFGVAG
TKTVGYCAQHAPGGIVNAYSRKCGTEGCGTVPSFGVVGTKTAAFCAQHAP
DGMGHVKSRKCKTVGCRKRSSFGVAGTKIAEYCAQHTPNGMVDVKNRKCK
TDGCGKRSSFGVEGTKIEEYCAQHAPDGMVNVYGRKCKTEGCRKGPSFGV
AGTKVAEYCGQHAPDGMVDVKKRKCGTDGCRTGPSFGVPGTRTLEYCAQH
APVGMVDVHSRRCKTEGCGKVPSFGVIGTKTPQFCAQHAPDGTVNVNKRK
CRTVGCGKQPSFGVAGTKTVEYCAQHAPNGMVDVKNRKCRTDGCGKRPSF
GVAGSNTVEYCAQHAPDEMVDVYSRKCKTEGCGKGPSFGVAGTKVAEYCA
QHAPDGMVHVKKRKCGTDGCRTGASFGVAGTRTVEYCAQHAPDGMVDVYS
RRCKTEGCAKQPSFGVVGTNTAKYCAQHAPSGTVNVNKRKCRTVGCGKQP
SYGVAGTKTAEYCAQHSPDGMVNVCRTMSRTVSGKRASFGMTSTKTTMNF
AQHSLNEMVDVRRRKCRTEGCGKQPSLGVPGSNTLEYCEQQAPDPVVGVF
SRKCKTEGCVKDPSSGVPGTKTAEYCVQHAPDGMVDVKSRNQFRIGGCGK
ILSLGVAGTKTAEYCSQHAPNGMVDACSRKCITGGCEKELSFRVANTRTA
EHCAQHARLKCGVEGYREGEVDPHHSGKETFANILPKSLKRQTIYPPATT
SPPSEGSQGSRKRVRYTEITSTAPVQPISRESAGGAGTMSDIEGQKSPVN
QDASVKAEVQLSV*
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mRNA from alignment at A-nodosum_M_contig880:164079..168293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig880.15.1 ID=mRNA_A-nodosum_M_contig880.15.1|Name=mRNA_A-nodosum_M_contig880.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4215bp|location=Sequence derived from alignment at A-nodosum_M_contig880:164079..168293- (Ascophyllum nodosum dioecious)
ATTTTTTATTTTTTATTTTCCGAACATCGTTAATACAGCGACATGGCTCT
AAAATAAATAAAAATGCAAAGCCCAAGTTCGAACTAAGTTGCCTGCACGC
GGAATAATCGCGCGTTTCGCGCGCGGGTTTAGTTTCGCGAAGTGTCACGA
TGCGGCAGGTTCAACTCTGTACTGGTATAATTCTACACGGTGGTGCTGTG
AGCAATACGTCAAGGACGGGACGTTCTACTTCTCCAGTAGCTGAAATATG
TGGCAAAATCCCGGTGGTCGAAATTAAAGGCAAGAAAGTTGCGGACAGTT
GCGCATAGCCTGCGTCAGACGGGATGGTCGATGTCAAGAACAGAACGTGC
AGAACCCGGGGCTGCTGCAGTCGACCGTTTTTCGGAGTGGCCGGCACAAG
AATTGCGGAGTACTGTGCACAGCACGCATCAGACGGTATGATCAACGTCA
TTAGAAGAAAATGCATAAACGAAAGCTGTGGCATTAAGCGTTCGCTTGGG
GTAGCAGGTACGAAACCTGCAGAGTGCTGTGCTGAGCATGCACCGGACGG
GATGGTCGACGTCACGAGCAGAAAGTGCAGAACCGAAGGCTGCGTAAAGG
GGCCGTCATTTGGAGTTGCAGGTACGAAAACTGTGGGGTACTGTGCACAG
CACGCACCGGGCGGGATAGTCAACGCCTACAGCAGGAAGTGCGGAACCGA
AGGCTGCGGCACGGTTCCGTCGTTTGGAGTGGTAGGTACGAAAACTGCGG
CGTTCTGTGCTCAGCACGCACCGGACGGGATGGGCCACGTCAAGAGCAGA
AAGTGCAAAACAGTAGGCTGCAGAAAGAGGTCGTCTTTCGGAGTTGCAGG
TACGAAAATTGCGGAGTACTGTGCACAGCACACACCGAACGGGATGGTCG
ACGTCAAGAACAGAAAGTGCAAAACCGATGGCTGTGGAAAGCGGTCGTCG
TTTGGAGTTGAAGGTACGAAAATTGAAGAGTACTGTGCACAGCACGCACC
GGACGGGATGGTCAATGTCTACGGCAGAAAGTGCAAAACCGAAGGCTGCA
GAAAGGGGCCGTCGTTCGGAGTTGCAGGTACGAAAGTTGCGGAGTACTGT
GGTCAGCACGCACCGGACGGGATGGTCGACGTCAAGAAGAGAAAGTGTGG
AACCGATGGCTGCAGAACGGGACCGTCGTTTGGAGTTCCAGGTACGAGAA
CCTTGGAGTACTGTGCACAGCACGCACCGGTCGGGATGGTCGACGTCCAC
AGCAGGAGGTGCAAAACCGAAGGCTGCGGCAAGGTGCCGTCGTTTGGAGT
GATAGGTACGAAAACTCCGCAGTTCTGTGCTCAGCACGCACCGGACGGGA
CGGTGAATGTCAACAAGAGAAAGTGCAGAACCGTGGGCTGCGGCAAGCAA
CCGTCGTTCGGAGTGGCAGGTACAAAAACTGTGGAGTACTGTGCACAGCA
CGCACCGAACGGGATGGTCGACGTCAAGAACAGAAAGTGCAGAACGGATG
GCTGCGGAAAGAGACCGTCGTTTGGAGTTGCAGGTTCAAATACTGTGGAG
TACTGCGCACAGCACGCACCGGACGAGATGGTCGACGTCTATAGCAGAAA
GTGCAAAACCGAAGGCTGCGGAAAGGGGCCGTCGTTCGGAGTTGCAGGTA
CGAAAGTTGCGGAGTACTGTGCTCAGCACGCACCGGACGGTATGGTCCAC
GTCAAGAAGAGAAAGTGTGGAACCGATGGCTGCAGAACGGGAGCGTCGTT
TGGAGTTGCAGGTACGAGAACTGTGGAGTACTGTGCACAGCACGCACCGG
ACGGGATGGTCGACGTCTACAGCAGGAGGTGCAAAACCGAAGGCTGCGCC
AAGCAACCGTCGTTTGGAGTGGTAGGTACAAACACTGCCAAGTACTGCGC
ACAGCACGCACCAAGCGGGACGGTGAATGTCAACAAGAGAAAGTGCAGAA
CCGTGGGCTGCGGCAAGCAGCCGTCGTATGGAGTAGCAGGTACAAAAACG
GCAGAGTACTGTGCACAGCACTCCCCGGACGGGATGGTCAACGTCTGCAG
GACGATGTCCAGAACCGTTAGCGGCAAGAGGGCCTCCTTCGGGATGACGA
GTACAAAAACGACGATGAATTTTGCACAGCACTCCCTGAACGAAATGGTC
GACGTCCGCAGGAGAAAGTGTAGAACTGAAGGCTGCGGCAAGCAGCCGTC
GTTGGGAGTGCCAGGTTCAAACACGTTAGAGTACTGTGAGCAGCAAGCCC
CGGACCCCGTGGTGGGCGTGTTCAGCAGAAAGTGCAAAACCGAAGGCTGT
GTGAAGGACCCGTCGTCTGGAGTGCCAGGTACGAAAACTGCGGAGTACTG
TGTTCAGCACGCACCGGACGGGATGGTCGACGTCAAGAGCAGAAATCAGT
TCAGGATCGGAGGTTGCGGCAAGATTCTGTCGTTAGGAGTGGCAGGTACG
AAAACGGCGGAGTACTGCTCGCAGCACGCTCCGAACGGGATGGTCGACGC
CTGTAGCAGAAAGTGCATAACCGGAGGCTGCGAAAAGGAGCTGTCGTTTA
GAGTGGCCAACACAAGAACGGCGGAGCACTGTGCACAGCACGCCAGACTT
AAATGCGGTGTCGAAGGATACAGGGAGGGAGAGGTTGACCCACACCATTC
CGGGAAGGAAACTTTTGCTAACATACTTCCGAAGAGCTTGAAACGTCAAA
CCATTTATCCTCCTGCCACCACAAGCCCTCCGTCGGAAGGTAGCCAGGGC
TCTCGTAAGCGAGTACGATACACAGAAATTACATCCACAGCACCGGTGCA
ACCTATCTCACGAGAGTCGGCTGGAGGAGCAGGGACTATGTCGGATATTG
AGGGGCAGAAATCTCCCGTCAACCAAGATGCTTCTGTGAAGGCGGAGGTG
CAGCTCTCCGTGTAGCAAGGTACACTAGTATACGTGACATCAACCTATAT
CTGCTCAATACTAGTTGTTATATTCTTCCCCCTGTCTTCCTGCCTGGGTT
GTATTCCGCTGCTTATAGGACTGCCTTTATTGCGTAGTTTGCTAACGAGG
ATTTTTTTCTTGCTCTAAGCTCATCATTTGGTTGTTTTTTGTTTGTTTCT
TGTTCGTTTCTTGTGTTTTTGTATTTGTGTTTCTTGTTCATTTATTTTTA
ATTTGCGTCTCTTTTGTGTCCCTTCCTGGCAACGATGTCCTTTGCTGGCT
ATTTTCCTGCTCGTTTCTGTCTGTCTGTTTTCCCTGCTTTTTTTCTCCGA
ATATGTTATGTTCCCGGTTTGGCTTGGTTTGGTTCCGTCTATCTTGCGAC
CATGGCTGGATTCGTAGGGGATCAGTCAATGTGAGATAAACAACAGCAAC
AACAACAACAACAGTAACTGTAGTACTACGATTCTCTCGACCGTTGCTCA
ACCGTTGACTTTTCTTTTGTTGAGATTGAATGCGTACCCCGTCTCGTTCT
TGAGTCTCGCGCTGGGTTTCGTCTCGAGTCTGTGAGTTCAGCTCAAGGGC
ACCTCTTCCTCTTAGACCCTCAAGACCTTGCAGGTGCACCCACAGCCTTC
ACGAAACACGCCACTAGTGCTTACCCCCAAGGTCCTGTTCTCCCTTTCGC
CCGTCTTTCGAACTGTCTCAGGTGCTGTGGTCAAGAGCGTGGTCATGATT
TTTCTTCCATAGCCGCCGAGATGTTTATGGGTTTGGTGAGGGTCCTACCG
TGCATACCTCCGGAACTTTATTTTTTCACTTCATATTATATGCATGTAAG
AGTGTTTCATCCTTGATATGCCGGTACTGTACTTAAGAAGTCCTGATGAT
ATAGCGACAAAGAGGGACGGGTAGGTAGCACCGGTCCTCAGGACGATGCT
ACGGAAGATGATTCCCTTAATTCTGTGGCCACCCCGGTTCCGATTTCGAG
GGGGGCGAGCGTTCGTGTTTGGTAGAGCGGTCGTCGCGAATGCGTACTCG
TCTGACAATCACGTGATCAGGTAACTATACTGTATGAAGTTCACCTACGA
ATTAGGCTCGCATTGTATGGATAGGGGTGATCGATGTGGTGGTTGAATGA
TTTCGCGATAGGGACTGAATTTAATGCAATTTACACTGGCCTTATAACTA
GATACTGTTTCCGTGTTGTTCTTATGCATACCAATCGTTGACCACGTAAA
CCGGAACTAATGTTGACTTTGACTGAAGATGCCCGAACCACACTCGGAAA
AGTCCCAATAATGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig880:164079..168293-

>mRNA_A-nodosum_M_contig880.15.1 ID=mRNA_A-nodosum_M_contig880.15.1|Name=mRNA_A-nodosum_M_contig880.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2592bp|location=Sequence derived from alignment at A-nodosum_M_contig880:164079..168293- (Ascophyllum nodosum dioecious)
ATGGTCGATGTCAAGAACAGAACGTGCAGAACCCGGGGCTGCTGCAGTCG
ACCGTTTTTCGGAGTGGCCGGCACAAGAATTGCGGAGTACTGTGCACAGC
ACGCATCAGACGGTATGATCAACGTCATTAGAAGAAAATGCATAAACGAA
AGCTGTGGCATTAAGCGTTCGCTTGGGGTAGCAGGTACGAAACCTGCAGA
GTGCTGTGCTGAGCATGCACCGGACGGGATGGTCGACGTCACGAGCAGAA
AGTGCAGAACCGAAGGCTGCGTAAAGGGGCCGTCATTTGGAGTTGCAGGT
ACGAAAACTGTGGGGTACTGTGCACAGCACGCACCGGGCGGGATAGTCAA
CGCCTACAGCAGGAAGTGCGGAACCGAAGGCTGCGGCACGGTTCCGTCGT
TTGGAGTGGTAGGTACGAAAACTGCGGCGTTCTGTGCTCAGCACGCACCG
GACGGGATGGGCCACGTCAAGAGCAGAAAGTGCAAAACAGTAGGCTGCAG
AAAGAGGTCGTCTTTCGGAGTTGCAGGTACGAAAATTGCGGAGTACTGTG
CACAGCACACACCGAACGGGATGGTCGACGTCAAGAACAGAAAGTGCAAA
ACCGATGGCTGTGGAAAGCGGTCGTCGTTTGGAGTTGAAGGTACGAAAAT
TGAAGAGTACTGTGCACAGCACGCACCGGACGGGATGGTCAATGTCTACG
GCAGAAAGTGCAAAACCGAAGGCTGCAGAAAGGGGCCGTCGTTCGGAGTT
GCAGGTACGAAAGTTGCGGAGTACTGTGGTCAGCACGCACCGGACGGGAT
GGTCGACGTCAAGAAGAGAAAGTGTGGAACCGATGGCTGCAGAACGGGAC
CGTCGTTTGGAGTTCCAGGTACGAGAACCTTGGAGTACTGTGCACAGCAC
GCACCGGTCGGGATGGTCGACGTCCACAGCAGGAGGTGCAAAACCGAAGG
CTGCGGCAAGGTGCCGTCGTTTGGAGTGATAGGTACGAAAACTCCGCAGT
TCTGTGCTCAGCACGCACCGGACGGGACGGTGAATGTCAACAAGAGAAAG
TGCAGAACCGTGGGCTGCGGCAAGCAACCGTCGTTCGGAGTGGCAGGTAC
AAAAACTGTGGAGTACTGTGCACAGCACGCACCGAACGGGATGGTCGACG
TCAAGAACAGAAAGTGCAGAACGGATGGCTGCGGAAAGAGACCGTCGTTT
GGAGTTGCAGGTTCAAATACTGTGGAGTACTGCGCACAGCACGCACCGGA
CGAGATGGTCGACGTCTATAGCAGAAAGTGCAAAACCGAAGGCTGCGGAA
AGGGGCCGTCGTTCGGAGTTGCAGGTACGAAAGTTGCGGAGTACTGTGCT
CAGCACGCACCGGACGGTATGGTCCACGTCAAGAAGAGAAAGTGTGGAAC
CGATGGCTGCAGAACGGGAGCGTCGTTTGGAGTTGCAGGTACGAGAACTG
TGGAGTACTGTGCACAGCACGCACCGGACGGGATGGTCGACGTCTACAGC
AGGAGGTGCAAAACCGAAGGCTGCGCCAAGCAACCGTCGTTTGGAGTGGT
AGGTACAAACACTGCCAAGTACTGCGCACAGCACGCACCAAGCGGGACGG
TGAATGTCAACAAGAGAAAGTGCAGAACCGTGGGCTGCGGCAAGCAGCCG
TCGTATGGAGTAGCAGGTACAAAAACGGCAGAGTACTGTGCACAGCACTC
CCCGGACGGGATGGTCAACGTCTGCAGGACGATGTCCAGAACCGTTAGCG
GCAAGAGGGCCTCCTTCGGGATGACGAGTACAAAAACGACGATGAATTTT
GCACAGCACTCCCTGAACGAAATGGTCGACGTCCGCAGGAGAAAGTGTAG
AACTGAAGGCTGCGGCAAGCAGCCGTCGTTGGGAGTGCCAGGTTCAAACA
CGTTAGAGTACTGTGAGCAGCAAGCCCCGGACCCCGTGGTGGGCGTGTTC
AGCAGAAAGTGCAAAACCGAAGGCTGTGTGAAGGACCCGTCGTCTGGAGT
GCCAGGTACGAAAACTGCGGAGTACTGTGTTCAGCACGCACCGGACGGGA
TGGTCGACGTCAAGAGCAGAAATCAGTTCAGGATCGGAGGTTGCGGCAAG
ATTCTGTCGTTAGGAGTGGCAGGTACGAAAACGGCGGAGTACTGCTCGCA
GCACGCTCCGAACGGGATGGTCGACGCCTGTAGCAGAAAGTGCATAACCG
GAGGCTGCGAAAAGGAGCTGTCGTTTAGAGTGGCCAACACAAGAACGGCG
GAGCACTGTGCACAGCACGCCAGACTTAAATGCGGTGTCGAAGGATACAG
GGAGGGAGAGGTTGACCCACACCATTCCGGGAAGGAAACTTTTGCTAACA
TACTTCCGAAGAGCTTGAAACGTCAAACCATTTATCCTCCTGCCACCACA
AGCCCTCCGTCGGAAGGTAGCCAGGGCTCTCGTAAGCGAGTACGATACAC
AGAAATTACATCCACAGCACCGGTGCAACCTATCTCACGAGAGTCGGCTG
GAGGAGCAGGGACTATGTCGGATATTGAGGGGCAGAAATCTCCCGTCAAC
CAAGATGCTTCTGTGAAGGCGGAGGTGCAGCTCTCCGTGTAG
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