mRNA_A-nodosum_M_contig880.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig880.12.1
Unique NamemRNA_A-nodosum_M_contig880.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig880.12.1 vs. uniprot
Match: D7FWF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF6_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.050e-45
Identity = 91/140 (65.00%), Postives = 112/140 (80.00%), Query Frame = 1 
Query:  517 PAAKQRKPSTSALAVYSWGMEARKGGVRETFTATIAQAEMTKVWSNGDVVINSGGRGATPAARVILNIFLKVFKVEIAEVDDGGGGGKAGVGGWQIEHQTGYRQAFSENMCMSLFANRDWSYIKTKLKRLPTKIFLPKDE 936
            PA ++R+P ++A A Y+WG+E RKGGVRE  TATI  A+M KVWSNGDVVIN+ G+G TPA +VILN+ L VFKVEIAE +   GG +     W IEH++GY+QAFSENM MSLF NRDWSY+KT+LKRLPTKIFLPK++
Sbjct:  223 PAPQRRRPPSTATATYTWGVEPRKGGVREKLTATIDAADMAKVWSNGDVVINTAGKGITPATKVILNLVLGVFKVEIAESESKSGGDERKPKTWHIEHKSGYKQAFSENMNMSLFPNRDWSYMKTRLKRLPTKIFLPKEQ 362
[Close]
BLAST of mRNA_A-nodosum_M_contig880.12.1 vs. uniprot
Match: A0A6H5JQR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR8_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.110e-45
Identity = 92/142 (64.79%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:  511 VAPAAKQRKPSTSALAVYSWGMEARKGGVRETFTATIAQAEMTKVWSNGDVVINSGGRGATPAARVILNIFLKVFKVEIAEVDDGGGGGKAGVGGWQIEHQTGYRQAFSENMCMSLFANRDWSYIKTKLKRLPTKIFLPKDE 936
            V PA K+R+P ++A+A YSW +E RKGGVRE  TATI  A+M KVWSNGDVVIN+ G+G TPA +VILN+ L VFKVEIAE +   GG +     W IEH++GY+Q FSENM MSLF NRDWSY+KT+LKRLPTKIFLPK++
Sbjct:  169 VVPAPKRRRPPSTAIATYSWSVEPRKGGVREKLTATIDAADMAKVWSNGDVVINTAGKGITPATKVILNLLLGVFKVEIAESERKSGGDEREPKTWHIEHKSGYKQPFSENMNMSLFPNRDWSYMKTRLKRLPTKIFLPKEQ 310
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig880.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWF6_ECTSI2.050e-4565.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQR8_9PHAE2.110e-4564.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig880contigA-nodosum_M_contig880:134822..146576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3566
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_007320.1
Cds size3087
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig880.12.1prot_A-nodosum_M_contig880.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig880 135196..146471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870286.7255325-UTR-A-nodosum_M_contig880:134821..1351951680870286.7255325-UTR-A-nodosum_M_contig880:134821..135195Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 134822..135195 -
1680870286.822757-UTR-A-nodosum_M_contig880:146471..1465761680870286.822757-UTR-A-nodosum_M_contig880:146471..146576Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 146472..146576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870286.7362916-CDS-A-nodosum_M_contig880:135195..1356221680870286.7362916-CDS-A-nodosum_M_contig880:135195..135622Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 135196..135622 -
1680870286.748602-CDS-A-nodosum_M_contig880:135943..1378631680870286.748602-CDS-A-nodosum_M_contig880:135943..137863Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 135944..137863 -
1680870286.7612164-CDS-A-nodosum_M_contig880:138065..1381661680870286.7612164-CDS-A-nodosum_M_contig880:138065..138166Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 138066..138166 -
1680870286.7739275-CDS-A-nodosum_M_contig880:138668..1387701680870286.7739275-CDS-A-nodosum_M_contig880:138668..138770Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 138669..138770 -
1680870286.786836-CDS-A-nodosum_M_contig880:138985..1393831680870286.786836-CDS-A-nodosum_M_contig880:138985..139383Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 138986..139383 -
1680870286.799907-CDS-A-nodosum_M_contig880:139789..1398891680870286.799907-CDS-A-nodosum_M_contig880:139789..139889Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 139790..139889 -
1680870286.8102417-CDS-A-nodosum_M_contig880:146432..1464711680870286.8102417-CDS-A-nodosum_M_contig880:146432..146471Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 146433..146471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig880.12.1

>prot_A-nodosum_M_contig880.12.1 ID=prot_A-nodosum_M_contig880.12.1|Name=mRNA_A-nodosum_M_contig880.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1029bp
MDGDEQALQELKNERQKSDVEKQEDTNAGHETSPTGGQPPDGGEIEARQP
EQAVCDGRAEEGAQRAVTERTTAQSMLHGVGGETATFRDDGVANQAQQWR
PPGALGDRERAGGAGGMTTASGARNRGISGGVWARVAPAAKQRKPSTSAL
AVYSWGMEARKGGVRETFTATIAQAEMTKVWSNGDVVINSGGRGATPAAR
VILNIFLKVFKVEIAEVDDGGGGGKAGVGGWQIEHQTGYRQAFSENMCMS
LFANRDWSYIKTKLKRLPTKIFLPKDEQPPGPALAEQQRQRQRQHPNTSA
GAGYFLGGRWPHDGPPEKALRGAPRGGGMAHLEHSWEGRGYHDDRSHLSS
AASAAAVAAAGEGGVSPELVRQLLRAAGGSTGGIAALAAAAVAAAAASGG
GGGGSGDPVGSRAVKSRRVSPGKAGDAGGESGGNDAALIQMTAQTPLSHG
APVAVVAEAVASSPAHGSDPGASAGGAQEQVDLHHASENRSKGGRRRGQR
SRSVSSEEGGGGDVDASAVTHRRGMRPTQSPEGWRPWRPEDNSPTPPRRP
RAEDVNSSLWRGHGRRRRRVDEGRRRMAFDGRDQGGGDAWRDGGFDRDGG
FGRDGRFSGDRRSSGDRRFSGGYVRDGGFGRGGNSFDKDGSFGRGGGLSR
GGGFGKDGGFGKGGFGRSGGFGRGGGNGGQGWRSLSPPPLHGVVWTPYRN
ADGDNEGQRDSAARLGGREYGWGGMNLPSENGGHGLADTGEYRGRAETRG
GGNDLAGEAAQAGVASIRGESRGPDYHTGENGDPGIGLSRRESYDPEQYD
PDAYDPGEVTVKRDVDNDGGVGKKRKSVSRSGSLTRTSKRHRRHSRSGSR
SRSSRRSERRNGSSPGSAGDTLPEAGPAKERFDHSPRRGYEKDYRGSRGD
ADSRGGMNDSWRYQETNHFTAEQSSQHTQPLVESDRRGFDYGSGGGFEGG
VGASWADAASFTVQQQQQQWQYPLQPRSGLAQQQQLPAPQHQQPSGQPPQ
VHVHTTQQHQEEEPPPPPPRKQLSVQQQ*
back to top

mRNA from alignment at A-nodosum_M_contig880:134822..146576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig880.12.1 ID=mRNA_A-nodosum_M_contig880.12.1|Name=mRNA_A-nodosum_M_contig880.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11755bp|location=Sequence derived from alignment at A-nodosum_M_contig880:134822..146576- (Ascophyllum nodosum dioecious)
GGAAGACAAGCTCTGCAGATTTACTTTGGCCGCTAGCTCTACGCCGGGAA
CGTCGAACCGTGATCTGTGGACAGCTAGGTGTATCCTCTTTCGAAACTAA
TCGAGATGGATGGGGATGAGCAAGCTTTACAAGAACTCAAGAATGTGAGC
GTTCATTTCTCGTACCCTCGGGCACTACCCAGGACGAGATAATGCCTACG
ACTCCCTGGCCATACTTGTGCACTCACTGAACGTACTATCCTCTCGACGC
AGGCAAATGCTTTCACTATGTTCACTCACTGATACTGCAGCTACAAGCCC
CGGCGATGCAGTACGCTATGTAATACCGAAGTAGTGATCATTGTTAGTGG
TAAAACACAATCTTGGTCCACCACTCAGTCGATTTTAAGCGCAAATACAG
AGAAATTTGTCCTCGACCACAATATGTGAGTACTGTACCTGGACTCCGTA
CTTCTGTCTCTCTACAACCCGTACGTTTCCTGTCCGGAGTGTACCACCAT
GGAGACAAATTGTCTTCTTCTGCACACACACGTCAACAGCTGCGTTTTGC
GGTTCGTGCCGTAGCTTCCTCCTCTGTGCTGTTGTTTTCCGTCTTACGCG
AATTTTCTGTTTTCAAACTCTCGACTCGCACTTCTACCGCAGCTCTATAG
CTACTAAGATAGGTTAGCTATCGCAATGATATACGCTCGCTAAAGGATAC
CTGGTAGGTGTGTAACTACATATCGTCAGCTTAACACAGGTGTTGGTGGA
ATGTGTGGTTGGTGTTTGGCTTGTTGTACTGGCGTCGTCCTCAATACTGT
ACGGGAAAGTGCCACACCTGATTGTAAAGAAAACAAACAGGCTGACGCAG
GCAGTGTTTATTTTTCGAAGACAATTTCTGTGCGGCGCGTTGTTGTGTAA
TTGTTCATCGACAGAGCGTGAACGTCTATCTACACATGTACTACGTGAAT
GTTCAGCAGAACCCTCCATGCGCAGCATTCTGTCACTAAGAATCTTCACA
TCTCTCCCCGGTTCTCGTCTACGATTTTTTATCGCGATGCAAATTCAGTA
CTCCTACTATTAATAGCACACTTTTCTACAGCAGTATTGATAAGCTCTAT
GCGCAGAACCCTGTGTTCGAAATTGTCAGTGAGGAGAGCGTAAAGGTCTA
TCTACACATGTACAACGGGAATGTTCAGCAGAACCTTCAATGCGTAGAAT
CCCGTGTCACTAAGAAATTTCCATCTCTCTTCGGTTCTCGCCAACGATTT
TTGATCTCGATGCAAATTCAGTGCTCTTACGAGCACACCTTTGTACAGCA
GTAGACTCTATGCACAGAAAACCCTGTGTTCGAAATTGTTCAAGAGAGCG
TGAAGGTCTGTACAACGGGAATATTCGGTACTGTTGTTTATATACCAACA
GTACGAAAAGGAACATACGGTACATTTCTGATTGGTCAAAATGCACCGTT
TTTGATACACCCGAGCTGAAACACCCGAGCCAAAATTGATGCAGAATACA
GATTAGAAGCTCGCTAAACGCTCGCAATAAATACTGTTGTTTGCGCTGAT
ATTCATTGTAATCCTCGTACTGCCTCCTCTTGTAAAAGTTTTGTAATATT
GAACTGTTATCTATAGCCCTACCTGATAGCTCTCTATCCCGGGGCCCTGG
GCAAGTCCACGAACAGCTACAGTATTTATTTCCGATCTGAGGGTCTACTC
TGTTCCTTTGAGCGTTTTGATCTACTCTCTTCACGGAGATCTTCGTGGTT
AGGGTTGGGGTCGCCGAAGCTCGGGGCTCATGGAGACGATGAACCAGCTA
TTAATACCCAAAAGACATGCCCAAAGTTCATAAATAGCTCTGCGCCGGTA
CTTTCAGCGTGCCCGCTTCATACCAATAGTAGGTGTGGGAAAGAGAGGCA
CATATTATTTGGTCCATGGTGACCTGCCAAGGCAGCACTCGTTCGGAACT
ACCTTGAGGCGTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGTC
ATCGGTACGCAATTGCGTGACGCGATAAACTCGGGACTGGCCCGATGGCG
TATGGCGGTTTCATAATTGGACGCCGCCGGGGAACTCGGGAGGAATCCCG
TAAGTAACCACCAGATTTAGCCTGAGTATGGAGATGAGCAGGCTGACGCG
GGACGGGACGGCTGCACCCGTATCGCGAGACCAAATTCTCAGGCACGCAC
GGGAACAGGGGAATATTAATTTTCCCTGTATAGCTGACCACGAGCAGGAT
TGGCAACCTTACCCGCTTGATCAATACTCTGCTAAATGTGATGACCATAC
ATACATACATACATACATACATACATACAGTATGTACCTTGTGAAGTATT
CTACGATCGAGGACAAGAGGAGTCGATGCTGGCAAATAAGCAAAGGGTTT
GGGTTACAATGCGAGGCGTTTTGTTTTTCTTTGCACATGACACTGTATGT
AGCAGTACGAACTACAGTATCACTATAAATAGTCACCGGTTGCTACTACC
CCTTATCGCCAGGTGCGTTACGGCAGCGCCTCTCTTCTACATCAGAGTCT
TCTCGTTCTCTTAAAAAGAGTCTAGTGATGGCGTCAAGACGAAATCCCTG
GCAAGATTTACATGTGTCATGCTTGAAGTTTTTTGCGGTTGCCTTCGAAC
ACGTACCGCAGGAGAGAGGCTAGCCAGCTGGCGTCAGCAAAGATTTATCT
CTCTTTCTCTCTCTCTTCTCCGTGCAACGACATGGACTTGCAGGTATCCA
GCAAATTTGACGTGATGAAAACGCCTTTGCAAGCATGTCGCAAAACCCTT
CACCCTTCACCAGATCCGCTTTTACTGTAAATAATATAATATGATATACT
AGGATACGTTCATAACTTATAAGCTCAAACCCTCTAGAAGGTCATGACAT
CGATACGATATACTGAGTACACGCCTCCGATACTACCTTTAAGATAGGTT
AGCTATCGCTATACGCTCGCTAAAGGATAGATGTGTAACTATCGTCAGCT
TAACACAGGTGCTGGTGTAATGTGTGGTTGGTGTTTGGCTTATTGTACTG
GCGTCGTCCTCAACACCGTACGGGAAAGTGCTACGCCTGATTCTAAAGAA
AACAAGCAGGCGGACGCAGGCATTTGTCGTTTCCGAAGGCATTTTCTGTG
CGGCGCGTTGTGTAATTTTTTATCTGCAGAGCATGAAGGTCTATCTACAC
ATGTCCAACGGGAATGTTCAGCAGAACCGTTTTATGCCCATCATTCTGTC
ACTAAGAATCTTCACATCTCCCCCCGGTTCTCGCCTATTATTTTTTATCA
AGATGCAAATTGAGTGCTCCTACTAGCACCCTTTTGAACAGCAGCATTAT
TAGGCTCTATCCGCAAAACCCTGTGTCTAAAATTGTTCATGATGAAAGCG
TGTGTGTGTGTTTTCTTCCCATTCATTCTGGACTTCAATGGACGTACCAG
CCGGGGTCACACAGGAAGAAGGTAACACAGGATTTTCCATCCACCTTCTT
TCTGCGGTGCTTGCCTTAATTTTTTTCGCGAGAACGATTCAGCCATTCCT
TTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGATTTAATCGT
TCTCCACCCGTTGGGCATTTGATTTTGATTTTTTAGTTTTTCAGTGAGAA
AATCCCGTTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGAGGTTACA
TGGTACCTCTGAGCTACCGGGGTGACCGAAAATTGTAAAACACTCTAAAC
AAAAACAACACACACAGCATGCATCAACAGATTCTGCCTGAAGTACAGAA
TTTGTTGCCACATGACTACATAAAATCGTGTACTGTATATACTGTTAGCA
ATATGTACTTGTTGATTACTGACTGTTGTTTTCATCTAACTTCCCGCTCC
TCTCCTTGTTGAACAGCAAAAGTGGTATCAACAGATTCTGCCTAAAGTAC
AGAAATTGGTGCGACATGACTACATAAAATCGTGTACTGTATATACTTTT
GTACAGCAGTATGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCGC
GCAATCCGGCCCTGTAATCTACTCATTCTATGCTACTGGATGTAACCCAC
CTGGGGGTTACTTATCGTAAACATATTCTTGGCTAGGAAACACAGCTACA
ACTCCTCTCCCCGCTACGACCGCTCTCGGCCGGAACCGTAAAGCTGGTTT
CTCGCCGCTTGTCGCAACAAATAGAGACGGATATTCGACAAACAAGGAGC
ACCATGGCCAGCTCAAATTGTAACCTCCCCCTCCAAACCCAAAATCTCGC
CCCCCATCAAACCGTGCGACGTACTGCAGCAGTGGTGTCGTCATTCCGCC
CTCTTCCCCTTCAACACCCAATCGGTGCGTGTCCCGACTACACCCGCGCA
TCTTTTCTTTCTACGTAAGAAAATCCCCGCCAGCCAAAAGGCCCGGGTTG
GAACATCAACCATAAGTCTTGCACGGGGCGCTAATCGTGAGGTTAAGGAG
AGAGTCAAGGGTAAAGCTAGTCGGGTACAAAGTACCCGAATAGGGTCTGC
GCTCGTGTGTACGCCGGAACGTCCAACATCTTGAGCTAAAACTCTCCAAG
TCCACACGATTTGTGCTCGTCACTGTCGTCATGGTTGCTGTACCCACCGG
TTGCGTAGTAAGTCCTCCTCCACTATTTTCCCAAAACATGCAGTCACACG
AAAACCCCCACAAGCCATAAGGCACAGGGTGTACCACCAACCGTAAGTCT
GGCGCTGGACGCGAATCGTAAGGGCAAGGGAAGAGTCAAGGGTAAAGCTA
GTCGGATACAAAGTAGGCGAATAGGTCTGCGCTCGTGTGTGTACGTCGAA
ACGCACAGCATCCCGAGCTAAAACTTCCCGGAGTCCACGCGATTTGTGCT
CAATACTGTTCTAATGGTTGCTGTGTCCACTCGTGGGCCCACCGGCGCAA
GTCCTCCTCCCCTCTCGTCCCGAAACATACAGTCACACGAACAATCCTTC
ACAAGCCCTAGGGCACGAGGTGAAGCACCAACCATGAGTTTTGTGCTGGG
CACAAATCCTGAGGGCAAGGAGAGAGTCAAGGGTAAAGCTAGTCGGATAC
CAAGTAGCCGAATAGGGTCTGCGCTCGGATGTGTACGCCGGAACGCCCAA
CATCTCGAGCTAAAACTTCTCGAATCCACGTGATTTGTGCTCAAGTGTGT
GTGTGCGTGTTTTCTTCCCATTCATTCTGGACATCAAATTCGTTAGACGT
ACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTCTCATCCACC
TTCTTTCTGCGGTGCGTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCA
TTCCTTCCCTCGTCGACTGTGAAGTCGAATTTTGTGTACTAACGATTTAA
TCGTTCTCCACCCGTTGGGCATTTTTGTACTTGTTGATTACTGTTGTTTT
CATCTTACTTCCCTATATTATTCCCCGAAACATGAAGCGCTTCTTCCTGT
CACAACCAGCGCTCTGAGAAGAGTTTGTTGAGAAAAAGTACCAGTTGTTT
GATATAGTAGGCCTCTAATCATTCTAGTCCAAGTGAACCTCTCTTCCCCG
GTGGAGCGAGTTTAAAGTTCAAGACGTACGCAGTACGTGGACGCCGGAAT
AGAACCTTAGGCCGATTCAGCCATTCCTTTCTCGTTCTCACCCGTTGGTC
ATTTTCAGTACTGTGCACACTGACCAATCAGAAGAATATTGGTTTACACC
GAGGGTATACAAAAATGGTATTCTGATTGGTCAATGTGCAATTTTTTTGA
TACACCCGAGCTCAAATTGATACACCTGCCGGATTAGAAGCTCACTACGC
TCGCAATAATACATGTCAATATGCCACTTACATACCAATAGTGGGTGTGG
GAAAATATGGGCGCACAAAAATTGGCCCATGGTGATACCTGCAAAGGCAG
CAACCGTTAATTGAACTACCTTGAGGACTACTGACCCTGTGCTGGCGGAC
TATCGGCAGTGAAACAATCGGTACGCAAATGCGTGACCTGATAAACTTGA
GACTGACCTGATGGCGGTTGGCGGTCTAAACACATGCACGCCGCCGCGGA
AAGCGGGAGGAATCCTATAAGAAAGCACCAACTTCAGTCTGAGTATGGAG
ATGAGCGGGCTGACGCGGGACGGGACAGCCAAACCCGTCTCGCGGTACCT
AATTCCCAGGCACGAACGCGGACAGGGAAATATTATATTCATTTTCCCTG
TTCAGCTGGCCTCGAACAGGATGGGCAACCATACGCGGTTGATCCATACT
CTGCTTTAAGTCATGACCATACACTTGCCTCTCGTTTGCAGCTTGGCGTG
TAGTCTTAGTAAATAGTAGTGTATTACGACAGCATGGAAACGCAGTTTAC
TTGCTTTGCGATCTACCCCAGTTTGTGACTTGACCTTTGTTTGTGGCCTC
CAGGAGTAATCCTTGTGTTTTCAAGATCGAGAGTCAAGCCCCCCCGCAGC
AATCCTAAATTTGGAAGACGTTTCGCCCTATTTTTTGTGCTGGACCAAAC
GTTTTCGCCTTTCGAACCGGATGGAGGTGGCTCTGCTTTGCTCTCATCAA
TCAGTATTTGTCGTAGTGCATCAATCGGTAGTATCAAGAGTACGACGTGA
CGAGCAACTTTGTCGTTTCTCCTCTCCTCTCCCCCAGGAGCGTCAGAAAT
CGGACGTGGAGAAACAGGAGGACACAAACGCTGGGCATGAAACAAGCCCA
ACGGGGGGTCAACCGCCAGACGGCGGTGAAATAGAAGGCGAGATGAAGAA
AGTGGAGAGAGTGTGGGGAGACGAGTTGCACGATCGAAGAGATCGCCTTT
AGAGATCGCCTTTAGAGATCGCCAGGCTGTGGTAGGCGTTACCCTCGACA
ACAGACAAGTGATTTGGCCCGACCTTGCTGCCGTGTCGACTCGGAGGCGG
GGGGTTAGGAAGGGAGGGGGCAAAGCATGGCCGGAATCGACGCCCGGGAT
GCTTTTGCCAACTGCGCAACAAGTTTTACTTGAACTACTGGATTCTGGAA
TCCTTGTCCAGTCTTCTGCAACGATGTAACATGCTTGAGAACGGGGGGTT
GGGTAGCATGGACCTACTTCGGCAGTGTTGTTCGAGTTTTTCACGCCTAT
CCACGCCGCACCTGCCACCTCCCATCCTCTCTCGATATGCCAGCGCGGCA
ACCGGAACAGGCTGTGTGCGATGGGCGTGCAGAAGAAGGAGCCCAGAGGG
CCGTGACGGAGCGGACGACGGCGCAGTCGATGCTGCACGGCGTAGGCGGA
GAAACCGCTACCTTCCGAGACGACGGCGTGGCCAATCAGGCGCAGCAGTG
GCGGCCGCCCGGCGCGCTGGGTGACAGAGAACGCGCGGGGGGGGCAGGGG
GCATGACCACTGCAAGTGGCGCGAGAAATCGCGGGATATCGGGAGGTGTC
TGGGCACGAGTCGCGCCCGCGGCGAAACAGCGGAAGCCGTCGACTTCGGC
CCTGGCCGTGTACTCGTGGGGGATGGAGGCGAGGAAAGGGGGCGTGCGCG
AAACGTTCACCGCTACGATCGCGCAGGCGGAGATGACCAAGGTAACCTGC
GCCTTCGTCGTGGATGGTGTCAGGATAGTGTAGCGAGATCGGTTTCTGGT
AATGGCGTTAAACAAGTCGCTCTCCGTTCCGTTCGTTACGCTTTTGTTTA
TTAATAGTTTCGTTGTCGCACCGCCTACCCAGCGACTCAGATATCTGTAC
GCGTAAAACGGTCGTTTTTTGGCACACCTCCGTCGGCGAACGAATTGCGC
GCAAAGGTGTGGTCTAACGGGGATGTAGTGATCAACTCCGGGGGGCGTGG
GGCTACTCCGGCCGCGAGGGTGATCCTGAACATCTTCCTGAAAGTCTTCA
AGGTGGAGGTGAGTTTCGCGACAGCAGTAGTTTACAACATGAGCGCTCGT
CGTACGCTGTTTCCAGTATATACCAGGTACATCGCTATTGGTCATTTTAT
ACGAGACGGTTCGCAGTGCCAGTTCAGACTCTTGTCATCGTCTGTCAATA
CATAGTTTTACTGTTGTTTTACCGGCATTAGAACCTACCACCGTCGTCTT
TGTGGTCTCGTTGCCAATTTACAACATTATCACCGTTGGTCATTAAAAAT
CTTTGCTTACGCTATACCCCCCCCCCCCCGCCCCATGCTTTTGCCCTCCA
CCCAACGACTAGAATTACTGGGTGTCTGATATCATATGCTGCCCCATAGA
GTTAGTTGTGTCTGGTGCGCACTTGCTCCTGCCATGTTTTGACAAATTTT
CTGGCATGGATGAGCCTTTCGGCGCTTCCACTGGGGAGGGTAAGATTGTT
TAACGGCCAAATCCCTCGTGCATGTGTGCGTATGTATGTCGCTTGCAAAC
CTCGTGCTAGATCGCAGAGGTTGATGACGGCGGAGGCGGCGGCAAGGCTG
GCGTCGGCGGTTGGCAAATCGAGCACCAGACGGGGTACCGGCAAGCTTTT
TCGGAGAATATGTGAGTAGCTGCCTCGCAGAAGACGGAGAAGGTTTTAGA
AAAAATATCGTGGGCAGTCCCCTGGGCTCGTAAGATCCAACTTTTATCAA
CGACGCTCTTGGGCTTCGAGTCCGCTAGAACAGGTTTTCGCGTGTTTGTC
TCGATCGCGAACCGCCGTCCTCGTACCTTTTTTGGATCGCGCGTTCCGTG
CCGTCCCCTCAAGGTGCATGAGCCTGTTTGCCAACCGGGACTGGTCGTAC
ATCAAGACCAAGCTGAAGAGGCTGCCTACCAAAATTTTCCTCCCCAAGGA
CGAACAGCCGCCCGGTCCCGCTCTTGCAGAGCAGCAGCGGCAGCGGCAGC
GGCAGCATCCCAACACGTCCGCCGGTGCCGGTTATTTTTTGGGCGGGCGA
TGGCCGCATGACGGCCCTCCGGAGAAGGCCCTGCGTGGTGCACCGCGCGG
TGGGGGCATGGCACACCTCGAACATAGCTGGGAGGGCCGTGGGTATCACG
ACGACCGAAGCCATCTATCATCCGCGGCTTCTGCCGCTGCGGTTGCGGCC
GCTGGCGAGGGGGGCGTCTCGCCGGAGCTTGTGCGGCAACTGCTAAGGGC
GGCTGGGGGGAGCACCGGAGGGATCGCGGCCCTGGCGGCGGCGGCTGTGG
CTGCAGCAGCGGCGTCGGGTGGCGGTGGAGGGGGCAGTGGGGACCCCGTG
GGGTCTAGAGCGGTGAAGAGCAGGAGAGTGTCTCCAGGGAAAGCTGGCGA
TGCCGGTGGCGAAAGTGGCGGTAACGATGCTGCGCTTATCCAGATGACTG
CCCAAACTCCTCTCTCGCATGGGGCGCCCGTGGCAGTCGTGGCCGAGGCT
GTCGCCTCCTCGCCTGCGCATGGATCCGATCCCGGGGCGTCGGCTGGAGG
GGCGCAAGAACAAGTCGACCTTCACCACGCCAGTGAAAATCGTTCCAAAG
GAGGTCGGCGGCGGGGACAGCGCTCGCGAAGCGTTAGCAGTGAAGAGGGT
GGCGGAGGCGATGTCGATGCCAGTGCAGTCACCCACAGACGCGGAATGCG
CCCGACCCAGAGTCCCGAGGGTTGGCGGCCCTGGAGGCCGGAGGACAATA
GCCCGACCCCGCCACGGCGGCCTCGCGCTGAAGACGTGAACAGCAGTTTG
TGGCGCGGGCACGGTCGGCGGCGGCGGCGTGTTGACGAGGGAAGGAGGCG
GATGGCGTTCGATGGTCGTGATCAAGGAGGGGGCGATGCTTGGCGGGATG
GTGGATTCGATAGAGACGGCGGATTCGGTAGGGACGGCAGATTCAGTGGG
GACCGTAGATCCAGTGGGGACCGTAGATTCAGTGGGGGATACGTTAGGGA
CGGTGGATTTGGCAGGGGTGGCAATAGCTTCGATAAGGATGGGAGTTTCG
GTAGGGGTGGCGGACTCAGTAGGGGCGGCGGATTCGGTAAGGATGGTGGA
TTCGGTAAGGGTGGATTCGGTAGGAGCGGTGGTTTCGGTAGGGGTGGCGG
CAACGGAGGGCAAGGCTGGAGGTCACTGTCGCCTCCACCACTCCATGGCG
TCGTATGGACCCCATATCGAAATGCAGACGGCGACAACGAGGGTCAGCGT
GATTCAGCTGCGCGGCTGGGAGGGAGAGAGTACGGCTGGGGGGGGATGAA
TCTCCCGTCTGAAAATGGTGGCCACGGGCTTGCGGATACCGGTGAATACC
GAGGGCGGGCAGAGACGCGGGGAGGCGGAAATGATCTCGCGGGGGAGGCA
GCGCAGGCTGGCGTCGCGAGTATTCGAGGCGAGAGTCGCGGTCCGGACTA
CCACACCGGTGAGAATGGCGACCCCGGCATAGGTCTCAGTCGGCGAGAGT
CGTACGACCCGGAACAGTACGACCCGGATGCCTACGACCCGGGAGAGGTG
ACTGTCAAGCGGGACGTAGACAACGACGGTGGTGTCGGCAAAAAGCGTAA
GAGCGTTAGTCGCAGCGGCAGCTTGACCCGTACTAGCAAGCGACATCGGC
GGCACAGCCGGAGTGGGAGCCGGAGCCGCTCGAGCCGCCGCAGCGAAAGA
AGAAACGGGAGTTCGCCAGGAAGTGCGGGAGATACGTTGCCGGAAGCGGG
GCCCGCGAAAGAGCGGTTTGATCATAGCCCCCGGTGAGTCCCCACCGTTT
TATCATGAATTGGAAAGTTGTGATTTTTTTCTGTTTTTGTTTTAGTCAAT
GGACGATTCGTAGGCTACCGTCGGCGGATGGAAAATGAATTTATCCTGGT
TTTGGCGCTTGAGTTTCCACCGTCAAAGTCGAGCGCATTAGGTCCTTATC
CTTTTTTCCCCCTTTTGTATTTACGCTCCGTATTGATGGACCTCTTTCGG
TGTTGACCTTCCGAATATAAAAAACGGCGCATACCTCTTTCTCACTTTTG
CACTCTCTCCACCGACCGGGTGTCGCTGCCCATGCCATTCCTGGCTCATC
TCAGCCGTGGGTACGAGAAGGACTACAGGGGCTCGCGCGGCGATGCAGAC
AGCCGGGGGGGCATGAACGACAGCTGGCGCTATCAAGAAACCAATCACTT
CACGGCGGAGCAATCATCACAACATACACAGCCGTTAGTTGAAAGTGATC
GGAGGGGTTTCGATTACGGAAGCGGTGGCGGGTTTGAAGGGGGAGTTGGT
GCGTCCTGGGCGGATGCGGCCTCGTTTACCGTGCAGCAGCAGCAGCAGCA
GTGGCAGTACCCACTACAACCGCGGTCGGGACTTGCCCAGCAACAGCAAC
TCCCCGCTCCGCAGCACCAACAGCCATCGGGGCAGCCTCCTCAGGTGCAC
GTCCACACGACACAGCAGCATCAGGAGGAGGAGCCTCCTCCGCCACCCCC
ACGAAAGCAGCTTTCAGTTCAGCAACAATAGCCGCAACAACAGCAGCAAC
CGACGACATTCGTTCTCGACTGGTCGAGCGGTGTGTGGCACGGGGCCTCG
CAAAGCGGCGTCCGGCCAGGTTAAACATTTGTGCAAATATTCCTCTTGTT
AAGCGTACAGCGCTGCAAAGGAAACATTTCAACGCAGGCGTTGGGGTTTG
CAGGCCTGAAAGGCCAGGGTCCATCGCGGGGGGGGGAAGCGCTGGTGAGG
AGGCTACCGCCTGGCTAGATTCAAGGCGGAACCCTCACGGGGTTGCCTCG
GAGCATCAGTTGTCTGAACCTGAGCTGACTACGAATGGTCTGGTTGCCAT
GTTTGTGTGTTCGAATGAAACTGGTAAAAACCTTTTCTTACACTGTTTAA
TAACA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig880:134822..146576-

>mRNA_A-nodosum_M_contig880.12.1 ID=mRNA_A-nodosum_M_contig880.12.1|Name=mRNA_A-nodosum_M_contig880.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=3087bp|location=Sequence derived from alignment at A-nodosum_M_contig880:134822..146576- (Ascophyllum nodosum dioecious)
ATGGATGGGGATGAGCAAGCTTTACAAGAACTCAAGAATGAGCGTCAGAA
ATCGGACGTGGAGAAACAGGAGGACACAAACGCTGGGCATGAAACAAGCC
CAACGGGGGGTCAACCGCCAGACGGCGGTGAAATAGAAGCGCGGCAACCG
GAACAGGCTGTGTGCGATGGGCGTGCAGAAGAAGGAGCCCAGAGGGCCGT
GACGGAGCGGACGACGGCGCAGTCGATGCTGCACGGCGTAGGCGGAGAAA
CCGCTACCTTCCGAGACGACGGCGTGGCCAATCAGGCGCAGCAGTGGCGG
CCGCCCGGCGCGCTGGGTGACAGAGAACGCGCGGGGGGGGCAGGGGGCAT
GACCACTGCAAGTGGCGCGAGAAATCGCGGGATATCGGGAGGTGTCTGGG
CACGAGTCGCGCCCGCGGCGAAACAGCGGAAGCCGTCGACTTCGGCCCTG
GCCGTGTACTCGTGGGGGATGGAGGCGAGGAAAGGGGGCGTGCGCGAAAC
GTTCACCGCTACGATCGCGCAGGCGGAGATGACCAAGGTGTGGTCTAACG
GGGATGTAGTGATCAACTCCGGGGGGCGTGGGGCTACTCCGGCCGCGAGG
GTGATCCTGAACATCTTCCTGAAAGTCTTCAAGGTGGAGATCGCAGAGGT
TGATGACGGCGGAGGCGGCGGCAAGGCTGGCGTCGGCGGTTGGCAAATCG
AGCACCAGACGGGGTACCGGCAAGCTTTTTCGGAGAATATGTGCATGAGC
CTGTTTGCCAACCGGGACTGGTCGTACATCAAGACCAAGCTGAAGAGGCT
GCCTACCAAAATTTTCCTCCCCAAGGACGAACAGCCGCCCGGTCCCGCTC
TTGCAGAGCAGCAGCGGCAGCGGCAGCGGCAGCATCCCAACACGTCCGCC
GGTGCCGGTTATTTTTTGGGCGGGCGATGGCCGCATGACGGCCCTCCGGA
GAAGGCCCTGCGTGGTGCACCGCGCGGTGGGGGCATGGCACACCTCGAAC
ATAGCTGGGAGGGCCGTGGGTATCACGACGACCGAAGCCATCTATCATCC
GCGGCTTCTGCCGCTGCGGTTGCGGCCGCTGGCGAGGGGGGCGTCTCGCC
GGAGCTTGTGCGGCAACTGCTAAGGGCGGCTGGGGGGAGCACCGGAGGGA
TCGCGGCCCTGGCGGCGGCGGCTGTGGCTGCAGCAGCGGCGTCGGGTGGC
GGTGGAGGGGGCAGTGGGGACCCCGTGGGGTCTAGAGCGGTGAAGAGCAG
GAGAGTGTCTCCAGGGAAAGCTGGCGATGCCGGTGGCGAAAGTGGCGGTA
ACGATGCTGCGCTTATCCAGATGACTGCCCAAACTCCTCTCTCGCATGGG
GCGCCCGTGGCAGTCGTGGCCGAGGCTGTCGCCTCCTCGCCTGCGCATGG
ATCCGATCCCGGGGCGTCGGCTGGAGGGGCGCAAGAACAAGTCGACCTTC
ACCACGCCAGTGAAAATCGTTCCAAAGGAGGTCGGCGGCGGGGACAGCGC
TCGCGAAGCGTTAGCAGTGAAGAGGGTGGCGGAGGCGATGTCGATGCCAG
TGCAGTCACCCACAGACGCGGAATGCGCCCGACCCAGAGTCCCGAGGGTT
GGCGGCCCTGGAGGCCGGAGGACAATAGCCCGACCCCGCCACGGCGGCCT
CGCGCTGAAGACGTGAACAGCAGTTTGTGGCGCGGGCACGGTCGGCGGCG
GCGGCGTGTTGACGAGGGAAGGAGGCGGATGGCGTTCGATGGTCGTGATC
AAGGAGGGGGCGATGCTTGGCGGGATGGTGGATTCGATAGAGACGGCGGA
TTCGGTAGGGACGGCAGATTCAGTGGGGACCGTAGATCCAGTGGGGACCG
TAGATTCAGTGGGGGATACGTTAGGGACGGTGGATTTGGCAGGGGTGGCA
ATAGCTTCGATAAGGATGGGAGTTTCGGTAGGGGTGGCGGACTCAGTAGG
GGCGGCGGATTCGGTAAGGATGGTGGATTCGGTAAGGGTGGATTCGGTAG
GAGCGGTGGTTTCGGTAGGGGTGGCGGCAACGGAGGGCAAGGCTGGAGGT
CACTGTCGCCTCCACCACTCCATGGCGTCGTATGGACCCCATATCGAAAT
GCAGACGGCGACAACGAGGGTCAGCGTGATTCAGCTGCGCGGCTGGGAGG
GAGAGAGTACGGCTGGGGGGGGATGAATCTCCCGTCTGAAAATGGTGGCC
ACGGGCTTGCGGATACCGGTGAATACCGAGGGCGGGCAGAGACGCGGGGA
GGCGGAAATGATCTCGCGGGGGAGGCAGCGCAGGCTGGCGTCGCGAGTAT
TCGAGGCGAGAGTCGCGGTCCGGACTACCACACCGGTGAGAATGGCGACC
CCGGCATAGGTCTCAGTCGGCGAGAGTCGTACGACCCGGAACAGTACGAC
CCGGATGCCTACGACCCGGGAGAGGTGACTGTCAAGCGGGACGTAGACAA
CGACGGTGGTGTCGGCAAAAAGCGTAAGAGCGTTAGTCGCAGCGGCAGCT
TGACCCGTACTAGCAAGCGACATCGGCGGCACAGCCGGAGTGGGAGCCGG
AGCCGCTCGAGCCGCCGCAGCGAAAGAAGAAACGGGAGTTCGCCAGGAAG
TGCGGGAGATACGTTGCCGGAAGCGGGGCCCGCGAAAGAGCGGTTTGATC
ATAGCCCCCGCCGTGGGTACGAGAAGGACTACAGGGGCTCGCGCGGCGAT
GCAGACAGCCGGGGGGGCATGAACGACAGCTGGCGCTATCAAGAAACCAA
TCACTTCACGGCGGAGCAATCATCACAACATACACAGCCGTTAGTTGAAA
GTGATCGGAGGGGTTTCGATTACGGAAGCGGTGGCGGGTTTGAAGGGGGA
GTTGGTGCGTCCTGGGCGGATGCGGCCTCGTTTACCGTGCAGCAGCAGCA
GCAGCAGTGGCAGTACCCACTACAACCGCGGTCGGGACTTGCCCAGCAAC
AGCAACTCCCCGCTCCGCAGCACCAACAGCCATCGGGGCAGCCTCCTCAG
GTGCACGTCCACACGACACAGCAGCATCAGGAGGAGGAGCCTCCTCCGCC
ACCCCCACGAAAGCAGCTTTCAGTTCAGCAACAATAG
back to top