mRNA_A-nodosum_M_contig8782.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8782.3.1
Unique NamemRNA_A-nodosum_M_contig8782.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.040e-21
Identity = 46/76 (60.53%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 MPDVAALRESWSDSSGGGTSDQMREKTPQE----LLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            +PDVAA+ E W + +G                  LLSALL WCQAVCHGY VPV NFTTSFADGRALCLL+HYYHP
Sbjct:  606 LPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 681
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.040e-21
Identity = 46/76 (60.53%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 MPDVAALRESWSDSSGGGTSDQMREKTPQE----LLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            +PDVAA+ E W + +G                  LLSALL WCQAVCHGY VPV NFTTSFADGRALCLL+HYYHP
Sbjct:  750 LPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 825
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A835Z978_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.810e-16
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   88 ELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            +L  AL  W QAVCHGY VP++NFTTSFADGRALCLLVH+YHP
Sbjct:  767 DLQQALAVWAQAVCHGYGVPIHNFTTSFADGRALCLLVHHYHP 809
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A3R7A519_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A519_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.920e-13
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   52 GTSDQMREKTPQELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            GT+    +KT + +   LL WC+ VC  Y VP+ N+T SFADG+ALCL+VHYYHP
Sbjct:  516 GTNHFAIDKTREPIAWHLLEWCRVVCANYNVPIRNYTASFADGKALCLMVHYYHP 570
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A024TRX6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRX6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.970e-13
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   52 GTSDQMREKTPQELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            GT+    +KT + +   LL WC+ VC  Y VP+ N+T SFADG+ALCL+VHYYHP
Sbjct:  705 GTNHFAIDKTREPIAWHLLEWCRVVCANYNVPIRNYTASFADGKALCLMVHYYHP 759
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A485LR02_9STRA (Aste57867_24058 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR02_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.690e-13
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   73 EKTPQELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            +KT + +   LL WC+ VC  Y VP+ NFT SFADG+ALCL+VHYYHP
Sbjct:  670 DKTKEPIAWLLLEWCRVVCAQYNVPIRNFTASFADGKALCLMVHYYHP 717
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BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A8K1FN67_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN67_PYTOL)

HSP 1 Score: 72.8 bits (177), Expect = 2.700e-13
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   55 TSDQMREKTPQELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            T D+  +    E+   LL WC+AVC  Y +PV +FT SFADGRALC L+HYYHP
Sbjct:  810 TPDEENQGIDAEVSELLLEWCRAVCANYSIPVTDFTESFADGRALCYLLHYYHP 863
[Close]
BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A6G0WI66_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI66_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.680e-13
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   73 EKTPQELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            +KT + +   LL WC+ VC  Y VP+ NFT SFADG+ALCL+VHYYHP
Sbjct:  645 DKTKEPIAWLLLEWCRLVCAHYNVPIRNFTASFADGKALCLMVHYYHP 692
[Close]
BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: UPI0006B0F883 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F883)

HSP 1 Score: 70.9 bits (172), Expect = 1.290e-12
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   88 ELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            E L  LL WCQAVC  Y +PV NFT SF+DGRALC L+H+YHP
Sbjct: 1068 ESLDFLLKWCQAVCTQYNIPVENFTVSFSDGRALCYLIHHYHP 1110
[Close]
BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Match: A0A397G091_9STRA (Calponin-homology (CH) domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397G091_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.270e-12
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   73 EKTPQELLSALLAWCQAVCHGYCVPVNNFTTSFADGRALCLLVHYYHP 216
            +K  + +   LL WC+ VC  Y VP+ NFT SFADG+ALCL+VHYYHP
Sbjct:   42 DKLKEPIAWHLLEWCRVVCATYHVPIRNFTASFADGKALCLMVHYYHP 89
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8782.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRH5_9PHAE2.040e-2160.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLN9_ECTSI2.040e-2160.53Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A835Z978_9STRA9.810e-1676.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R7A519_9STRA1.920e-1354.55Calponin-homology (CH) domain-containing protein n... [more]
A0A024TRX6_9STRA1.970e-1354.55Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485LR02_9STRA2.690e-1360.42Aste57867_24058 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1FN67_PYTOL2.700e-1355.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WI66_9STRA3.680e-1360.42Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI0006B0F8831.290e-1267.44abnormal spindle-like microcephaly-associated prot... [more]
A0A397G091_9STRA2.270e-1258.33Calponin-homology (CH) domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8782contigA-nodosum_M_contig8782:16956..17174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLN9
Preferred nameASPM
PFAMsASH,Arm,CH,IQ
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
Exons1
Evalue3.34e-22
EggNOG OGsCOG5022@1|root,KOG0165@1|root,KOG0160@2759|Eukaryota,KOG0165@2759|Eukaryota
Descriptionnegative regulation of asymmetric cell division
Cds size219
COG categoryZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870279.6063485-CDS-A-nodosum_M_contig8782:16955..171741680870279.6063485-CDS-A-nodosum_M_contig8782:16955..17174Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8782 16956..17174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8782.3.1prot_A-nodosum_M_contig8782.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8782 16956..17174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8782.3.1

>prot_A-nodosum_M_contig8782.3.1 ID=prot_A-nodosum_M_contig8782.3.1|Name=mRNA_A-nodosum_M_contig8782.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
MPDVAALRESWSDSSGGGTSDQMREKTPQELLSALLAWCQAVCHGYCVPV
NNFTTSFADGRALCLLVHYYHPW
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mRNA from alignment at A-nodosum_M_contig8782:16956..17174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8782.3.1 ID=mRNA_A-nodosum_M_contig8782.3.1|Name=mRNA_A-nodosum_M_contig8782.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig8782:16956..17174- (Ascophyllum nodosum dioecious)
ATGCCGGACGTGGCTGCTCTGCGAGAGAGCTGGAGCGACAGCAGTGGTGG
GGGAACCAGCGACCAAATGCGGGAAAAAACCCCCCAAGAGCTGCTCTCGG
CGCTACTGGCGTGGTGTCAGGCCGTGTGCCACGGGTACTGCGTGCCGGTC
AACAACTTTACGACGTCTTTTGCCGACGGCCGCGCGCTGTGCCTCTTGGT
GCACTACTACCACCCCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8782:16956..17174-

>mRNA_A-nodosum_M_contig8782.3.1 ID=mRNA_A-nodosum_M_contig8782.3.1|Name=mRNA_A-nodosum_M_contig8782.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig8782:16956..17174- (Ascophyllum nodosum dioecious)
ATGCCGGACGTGGCTGCTCTGCGAGAGAGCTGGAGCGACAGCAGTGGTGG
GGGAACCAGCGACCAAATGCGGGAAAAAACCCCCCAAGAGCTGCTCTCGG
CGCTACTGGCGTGGTGTCAGGCCGTGTGCCACGGGTACTGCGTGCCGGTC
AACAACTTTACGACGTCTTTTGCCGACGGCCGCGCGCTGTGCCTCTTGGT
GCACTACTACCACCCCTGG
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