mRNA_A-nodosum_M_contig876.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig876.21.1
Unique NamemRNA_A-nodosum_M_contig876.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig876.21.1 vs. uniprot
Match: D8LTN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.350e-18
Identity = 83/169 (49.11%), Postives = 108/169 (63.91%), Query Frame = 1 
Query:  364 RGGGPTDNAPWEDRPY----TYEHPPQPPMGVVVGAGVVGAVTGHIVFRSLLVSVGLGIGAMGLAATSDSRFGELARASGRVAVAAVHRTAELNDRYHLTAKVADGTRTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTKAGNALGLGLDKITEALSPP 858
            RGGGP+ + P + R        +    PP+  VVGAG VG + G +VF+SLL+S GLG+ AM +AA+S    G++AR+SGR+AVAA  R A+LN+RYH T ++ +G +                 XXXXXXXXXXXXXXXXXXXXX    AG A+  GLDK+ EAL+PP
Sbjct:   28 RGGGPSGSPPSKTRATGSRGLSDDDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVVHXXXXXXXXXXXXXXXXXXXXXXXXXAGEAMTSGLDKLAEALTPP 196
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig876.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTN6_ECTSI1.350e-1849.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig876contigA-nodosum_M_contig876:194602..200469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTN9
Model size1338
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue0.000221
EggNOG OGs2E68G@1|root,2SCZE@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003410.1
Cds size1155
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig876.21.1prot_A-nodosum_M_contig876.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig876 194635..200319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870277.7900603-UTR-A-nodosum_M_contig876:194601..1946341680870277.7900603-UTR-A-nodosum_M_contig876:194601..194634Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig876 194602..194634 +
1680870277.8768232-UTR-A-nodosum_M_contig876:200319..2004691680870277.8768232-UTR-A-nodosum_M_contig876:200319..200469Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig876 200320..200469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870277.8016422-CDS-A-nodosum_M_contig876:194634..1947701680870277.8016422-CDS-A-nodosum_M_contig876:194634..194770Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 194635..194770 +
1680870277.813546-CDS-A-nodosum_M_contig876:194933..1952451680870277.813546-CDS-A-nodosum_M_contig876:194933..195245Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 194934..195245 +
1680870277.8262527-CDS-A-nodosum_M_contig876:197866..1979491680870277.8262527-CDS-A-nodosum_M_contig876:197866..197949Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 197867..197949 +
1680870277.8405154-CDS-A-nodosum_M_contig876:198791..1988841680870277.8405154-CDS-A-nodosum_M_contig876:198791..198884Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 198792..198884 +
1680870277.8511496-CDS-A-nodosum_M_contig876:199260..1993741680870277.8511496-CDS-A-nodosum_M_contig876:199260..199374Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 199261..199374 +
1680870277.8631809-CDS-A-nodosum_M_contig876:199902..2003191680870277.8631809-CDS-A-nodosum_M_contig876:199902..200319Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 199903..200319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig876.21.1

>prot_A-nodosum_M_contig876.21.1 ID=prot_A-nodosum_M_contig876.21.1|Name=mRNA_A-nodosum_M_contig876.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=385bp
MAVATARSSCQEQETSLWITDRIGQALCVSIPRCLPCVRCVKITLDRTGG
KRRRLARKTEVSSGGFQDRLLCRTAHRETQTMAAAMAYLAASPSAPAAVV
ARLTAALISVRGGGPTDNAPWEDRPYTYEHPPQPPMGVVVGAGVVGAVTG
HIVFRSLLVSVGLGIGAMGLAATSDSRFGELARASGRVAVAAVHRTAELN
DRYHLTAKVADGTRTAAHRIRKFDQEHAVVHRATEGVKQVWRGLKEYDRK
HGISTKAGNALGLGLDKITEALSPPAPDTTSTDPGLSQAPRGSGNYPRYE
SPRRETRRGRETGGDFGRGQDRSGRGRRSTGSADRGRRNDAAKDEAKPGV
PSAEESYLWGKWGWWSAPPGRDKGYGKGVVDEDW*
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mRNA from alignment at A-nodosum_M_contig876:194602..200469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig876.21.1 ID=mRNA_A-nodosum_M_contig876.21.1|Name=mRNA_A-nodosum_M_contig876.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5868bp|location=Sequence derived from alignment at A-nodosum_M_contig876:194602..200469+ (Ascophyllum nodosum dioecious)
GTCTCCTGCTGCGACAAGTAAGTGTCGGCGAAAATGGCCGTGGCCACTGC
CCGTTCGAGTTGCCAGGAGCAAGAAACATCCCTCTGGATAACAGATCGCA
TCGGCCAAGCGCTGTGCGTCTCCATCCCGCGATGTCTACCCTGCGTGCGT
TGCGTGAAGATCACTCTAGGTACAGTACTAAAAGTATATTGAGTACAAAA
CAACCACGAAGTGAGAACTGTCGTTGTGATATCGAGAAATTATACCGGGT
AAATATTCATCAAAACACTTAAAATTCCATACGATTATTGTACGCTGTAC
GTATTTTTCGATTTGGGTTATGACTGTATTAGATAGAACGGGGGGAAAGA
GGCGAAGGCTCGCGAGAAAAACGGAGGTTTCATCCGGCGGATTCCAAGAC
CGACTCCTGTGCCGAACAGCGCACAGGGAGACGCAAACCATGGCCGCCGC
CATGGCTTACTTGGCTGCGTCGCCATCTGCACCGGCGGCAGTCGTCGCAC
GGCTCACCGCGGCCTTGATCTCCGTCAGGGGGGGTGGTCCTACCGATAAT
GCCCCATGGGAAGACCGCCCGTATACCTACGAACACCCTCCTCAGCCGCC
CATGGGGGTGGTGGTCGGAGCTGGAGTCGTGGGAGCTGTGACTGGTGAGC
ATTCTTCGCTGTTTTTTTTTTTTACAGAAGGCGTTTTTGGTGTGCTTTCG
AACCGTATGCAGCAAAACATTCCCGAGAGGAGAGCTCAGGTCGCACCGAT
GTGTTGAAACGGTGGGTTTCTTCCCTTCATTACACGTTGACCCTATGCTA
CTACCATCGAGGAACTAACTCGATTAAATGCCACCAAGAGTTTTTGACCT
TACAGCCCATGTTTCCATTAAAACCTTTTGACAGTTTCCCCCCCCTGTCT
AGGTGGATGCTCTATTATATTGTTATTCATTTCGTTATTAATATTGATAT
TATTACAATAGAAGGTTTAGATGCGTTCAGACCTTTCTTTAGACAGTTTG
AAACGTAAAAACCCCTTGGAGGCATTTCAATTTATTGAGGGTCGAGATCG
CGAAATACGACGATTCCATACGTGTACGCAAATGCGTAAAAAAATGCGTA
TCGCGTTGAACTCTCAACGACCACGGCACCTTTGGTCGAGAAGGCCCGAC
GTTAAGTAGTGAGACACGATGGCTTTGGTATATCACTTTTGTAGAAAACG
CACACACACACACCCCTTTGTCGCGTTTGATCAGAGGTTTTCGTAACAAG
TATCATTGATCCCCCCTTGGGAGGATCAATGCGAGTGGCATAGAATGACT
AGGATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACA
CACACACACACACACACACACACACACACACTGTGTTTACGATAAGTAAC
CCCCAGGTGGGTTACATACAGTAGCATAGAATGAGTAGATTACAGGGCCG
GATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACACAAAC
ATAACGGGAACGAGAATAGGATTGGGGAGGGCGGAAGGGAGGCAAAAAAG
CGCAAGAAACCGCAAAATAGTTGTAGACGCCGTGCGGGAAATGGGGGAGA
CACAGGTGGAAAGCGAAAAAAATGTAGAAAAGAAAGGGTTGGTTCAGTAG
CTGCCAACCCGGATAATCTAGAAAGCAACAAGGAAGCAGGGGGGGAGCAC
AATGTGCTCAGGGCTCAAGTAAGATTTGTACAAGTAGAAAGAGTGTGTCC
CATTTGTCGCTTCTGATCAGAGGTTTTCGTAACAAGTATCATTGATCCCC
CCTTGGGAGGATCAATGCGAGTAGCATAGAATGACTAGGATGACAGGGCC
GGATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACACACA
CACTGGTATCATTTCCTTTTGGCGAACACTGATTCAAACCCAACCCGTCG
ACACCGCTTTTATATCATGTTATCACCCAAACTAACGACACTCTAATAAT
AATCATGTGCCGCGGAGACTAGCGGTTCAATTCTTGAGCTATTCAGCGAA
GTCCAATGGGAAACCAGCAAAAAGACTCAAATGTTCGACAAAAGGGTAGG
TGACTTCCGACCAAAAAACTTTGGTCCCCGGTCCCGCCGCTTGCTTACGG
AACAAAAAATCCGACGAAGCCGAAGCGGATCGAATCGGATCGGATCGGAT
CGGATCGAGTGAATAAAATCGATTGTACAGTGTGTTGTCTTTTGTAGTGT
AGTATGTGGTTGTGTCGAGGGAGAGGATCTTGCCTTCGCCATGCGACTCT
CACTTACTTCTCCCCCCGCCCGTCTCCATGAACTGCTGCGGTCGGCCGAC
AAGGCGGAGACAAGTTTCATTTTTCTGCGTCCGATTCACGGCGTCGCAAT
GGAGTGTGCCGTGCCACTTTTAGCAACTACGATTAATGGGCTGCGCTACG
CGGGTTGACCCATGCTGCTCGAAATGTTCCGCATTGCAGCTACTAATAGT
GACTTATTAATAGCGCTGTACCGAATAGCGCTGTACCGAGTGTAGCTCGT
GTGGTACGGAGTGGCTTTTGTTCCACCGAATATAAAGCCGATGTTGTACC
GAATAACTCATATTGCGCCGTTCAAACCCCATGTTGCGCCGAATGACTTA
TGTTTCACCGGATTCCCTTCACTCTCTTATCTCATTGTATATAAATCGCG
GTTGTTCTGGGAGTACAAGCATGTTTTCTTGCGTCGGTCACACGCACACA
CAGCCAATAATCCCTCGTTGAGGGAAATGAAATGCGTACATCTTATTAGT
AATATTAATACTGTATTAGACTAATCCGCACGACAGGGCAGGATTGCGCG
GTTATGTGCAATTTTAATAAATACGCAAAACAAACACGTTAACGAATGAT
GGAGGCAAAACAAAGAGGTGAAAAACGGGGGAGAGTTGGGGTGGCAGGGA
CAGAAAGGGTCGACGATAGAGTATCGATACAGTAGATGCCGGCCGAGGCC
AGCGAAACACAATAACAACGAGGAAGCAGAGAGGGGAGTGGAAGGCGCTG
GGCGATTACCGAAAGACCGTTTATAGGGTGTGTCCTCCTTTGTTGCGTCT
CATTACAGCAATCACTGATCTTTGATCCTCTATTCCGAGGACCAATTCAA
ATGACTATTTATAATTAATAGCATGGCGGGACCAGATTGGTCATCACGTT
CAGCGGATGCAATCTAGTGTCACACAATAACACACACACACGCGCTCGCG
CCTGTTGTCCCTCAGGTCACATTGTTTTCCGTTCCCTCTTGGTGTCGGTG
GGGCTAGGCATCGGAGCGATGGGATTGGCCGCCACCTCGGATAGCCGGGT
GAGTCTTGGTCCTCCCGTTCCCGCTCAGACGGGCGGCGTCAGAGTATCAA
CTGTTTTGTCCATGTGTAGGTCTCCCGCAGCCGGCCCGATGCAACGAGAA
CGCCAGCCAAACCCTCTACAGAACCTAAACCATATCGCGAAATTTCACGT
CAACCAGAGGATAGAGTCAAATTTATGCACACAGAAGTTTTAGCTCAGCC
TAGCGGGCTGTGCACAGAAGATTATTTACATATATAGATAAATATATACA
CATAAAAATTCTTCGCGTGGTGGTGCATAGTCTAGTCGACCGTCCACGCG
CTTTGTACATCTGCCTGTGCGGAGGTTTGCGTCATTTTTTCTCTCACCCT
CCGACTGCGTGTCGCGAGTGATTACGTTGTGTGTTTGTTTTAAAAGCACA
GCATCCCTTCCGTTAACATTTCCCAGTACTTGGAAGTAGGGCAAGCTCTA
TTAAATAATATACTAATGAAAAGTCAAAACTACGCGGATGTTGTGGCCGT
TTCACCGGCCGAATTCCGATGTCCTCACAAGCTTCGCCGTTTCTAACTGA
GACGGAATCATGCCGGGATCCGTCGACATAGCTCCAGTCAGCTAGTCTAC
ACCTAACGCTTTCGCTGCGTCTGGTGAACGATCCACCTCCCACAGTCAAA
ACTGTTCTTCGTATGCGTTCGACCAATCGCGCTTTCCTAGGGCTGTGATC
CCTCCCGTCGTGATAACGTCGCCTCTCGCCGAAAGCACCGCACGCGTGTC
CTCTTGCACCCCCTTTCGTCGCGTTGTGTATGCGTTTGTGTTTCTGCTTT
CCCTCCGTTATGCTTGGTACTCGATCTTCACTAAGTCCAGTTCGGAGAAC
TCGCGCGAGCATCGGGAAGGGTCGCGGTAGCGGCTGTCCATCGGACTGCA
GAGTTGAATGATCGCTACCACCTTACAGCAAAGGTGAGGTTGACTCCATT
GATGGCTAGCTCGTGTTGTCATTGTCGCTTGGAGGGGGCAGATCTTCCCC
GAGTTGAGTCGTTCGGAGGGTGAAGAAGGCGCACCAACGCCAGCACCAAC
ACCATTGGGCAGGTAACTTCATCTTCTGTTGTTGGTTGAAATCTACACAT
TATCCTGGCGGGGATATGAGTCCCTCAATCATGCTGCTCCTAACTTCGCC
GATGCGACTGCTGTTGCTCCTTCTGAGTGCCTCTACCCTGAGGGGCAGTA
GCTAGAACAAGAAGTGTTTAGCGTGGTACGCGTTGCGCGGACGCATCTTT
CTCATGACTTGTTCCATCGCGCTCCGCCGTTCGGGGGGGGGGGTGGCTGA
CGGCGGCAGGTGGCTGACGGCACTCGGACGGCGGCGCATCGGATACGAAA
GTTTGACCAGGAGCACGCCGTCGTGCACCGGGCAACAGAGGGTGTGAAGC
AAGTGTGGCGCGGCCTCAAGGAGGTGCGACGAAGAAGTTGTACTGAGAGA
GAAGATTCAGGAGGGAAAATCACATTCGTCGGGATTCGCCGGGGATTCGA
AGTGAAAAAAATAGCCGGATCCGGAGGGGAGGAGAGGGGAGGGGAGAGAG
TCAAAGACCAGGACGCAGCTAGATAAAATATGGAGACTTTAAGAGCTGCG
ATTTCGCCACCCTTGATCAGATGGTATTTTTTGTTTTTCCAATGTGATTA
ACACGTGTTGGCATCACCGGCATTAGTTTGTCTTTTCCTGCGATCTGATT
GTTTCCGATAAACGAATGCCTTATCAGAGCACAAGAACGGTGCCCCCTGG
AAGGCGTTATTACTCTGACGGAGAAAGAAGGTGTATGGAATTTGGAATCC
GGTCTCTTTCAGTTCATACAAAAGGTTTCCACCACTCGGTGGGGCGTTCC
TTCTTCGTGCCCTGCCGTCGCACCATACGACCAACCTACGGGGTTCCTCA
CGTAGTACACTCCTCGCACTTTTCCCCTGTTTATAAACCATCTCGTCGCA
GTACGACCGCAAGCACGGTATTTCGACAAAGGCGGGAAACGCGCTGGGCC
TGGGTCTGGACAAGATTACGGAGGCATTATCGCCACCGGCGCCGGACACT
ACTTCGACCGATCCCGGGCTCAGCCAAGCTCCTCGCGGCAGCGGCAACTA
TCCCCGTTATGAAAGTCCACGAAGGGAGACGCGACGAGGAAGGGAAACCG
GTGGCGACTTCGGCAGGGGGCAAGATCGTTCAGGACGTGGACGGAGGAGC
ACTGGTAGCGCGGACCGCGGTAGGCGAAACGACGCCGCGAAGGACGAGGC
CAAACCAGGTGTTCCTAGTGCGGAGGAGAGCTATCTCTGGGGGAAGTGGG
GATGGTGGAGCGCGCCGCCTGGACGGGACAAGGGATACGGGAAGGGTGTC
GTTGATGAAGACTGGTGATATTTTTCGGACGACGATCCGGGGCGCTTATG
ACAACGGTGAAACATACAGTATTATTGCTGCACGGAGAAAAGTGAGACCG
CACGGTCTTTCGACCACGGCGGGAAACGCGCTGAGCCTGGGTCTTGACAA
GCTTACGGAGGCATTATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig876:194602..200469+

>mRNA_A-nodosum_M_contig876.21.1 ID=mRNA_A-nodosum_M_contig876.21.1|Name=mRNA_A-nodosum_M_contig876.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1155bp|location=Sequence derived from alignment at A-nodosum_M_contig876:194602..200469+ (Ascophyllum nodosum dioecious)
ATGGCCGTGGCCACTGCCCGTTCGAGTTGCCAGGAGCAAGAAACATCCCT
CTGGATAACAGATCGCATCGGCCAAGCGCTGTGCGTCTCCATCCCGCGAT
GTCTACCCTGCGTGCGTTGCGTGAAGATCACTCTAGATAGAACGGGGGGA
AAGAGGCGAAGGCTCGCGAGAAAAACGGAGGTTTCATCCGGCGGATTCCA
AGACCGACTCCTGTGCCGAACAGCGCACAGGGAGACGCAAACCATGGCCG
CCGCCATGGCTTACTTGGCTGCGTCGCCATCTGCACCGGCGGCAGTCGTC
GCACGGCTCACCGCGGCCTTGATCTCCGTCAGGGGGGGTGGTCCTACCGA
TAATGCCCCATGGGAAGACCGCCCGTATACCTACGAACACCCTCCTCAGC
CGCCCATGGGGGTGGTGGTCGGAGCTGGAGTCGTGGGAGCTGTGACTGGT
CACATTGTTTTCCGTTCCCTCTTGGTGTCGGTGGGGCTAGGCATCGGAGC
GATGGGATTGGCCGCCACCTCGGATAGCCGGTTCGGAGAACTCGCGCGAG
CATCGGGAAGGGTCGCGGTAGCGGCTGTCCATCGGACTGCAGAGTTGAAT
GATCGCTACCACCTTACAGCAAAGGTGGCTGACGGCACTCGGACGGCGGC
GCATCGGATACGAAAGTTTGACCAGGAGCACGCCGTCGTGCACCGGGCAA
CAGAGGGTGTGAAGCAAGTGTGGCGCGGCCTCAAGGAGTACGACCGCAAG
CACGGTATTTCGACAAAGGCGGGAAACGCGCTGGGCCTGGGTCTGGACAA
GATTACGGAGGCATTATCGCCACCGGCGCCGGACACTACTTCGACCGATC
CCGGGCTCAGCCAAGCTCCTCGCGGCAGCGGCAACTATCCCCGTTATGAA
AGTCCACGAAGGGAGACGCGACGAGGAAGGGAAACCGGTGGCGACTTCGG
CAGGGGGCAAGATCGTTCAGGACGTGGACGGAGGAGCACTGGTAGCGCGG
ACCGCGGTAGGCGAAACGACGCCGCGAAGGACGAGGCCAAACCAGGTGTT
CCTAGTGCGGAGGAGAGCTATCTCTGGGGGAAGTGGGGATGGTGGAGCGC
GCCGCCTGGACGGGACAAGGGATACGGGAAGGGTGTCGTTGATGAAGACT
GGTGA
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