mRNA_A-nodosum_M_contig874.25.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig874.25.1 vs. uniprot
Match: A0A6H5KJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ25_9PHAE) HSP 1 Score: 687 bits (1772), Expect = 1.420e-228 Identity = 497/927 (53.61%), Postives = 570/927 (61.49%), Query Frame = 1
Query: 1 QEPWFNIRISLKRADGE---------PPIPAASLRKPWSEFQRLHYLLLTDEFGCDEDVKAQLPSLPSELPPTTNGGN-------------------------------DGDMKSNADVVAGGLDAYLKALLAVPAVVQSEVFSGFLEAQGRRCEEREXXXXXXXXXXGWSGGSRAEKVNNIYGDTNIHGTGAPRTPETAVDFLLQPFDYGEAYVRRRSKHTERIDVLRGESVVWKFEVLDHLDINFSVVFRPHPVPLSPLVPEVATCENDG-----AEPSENPSLKAT---TSSKPNGRS-RRSGWWGSGSGGDSNVGRRGEVKA-------GCGAKAGAEAGGSERESALAPKKQIVHLPTRYSTGGGDLVQGSFTCPADGTCLLRWDNSYSRLRGKRLRFVVESATVATMRAAIEAAGATEHKRRNTRSAAARAILDSDQGEVRVSVMAVGIGDDLGREAEDEGVG-DGSDSGGNAGVS--YYYPSQYKFGRVRRIAATLLRDLGTMLDANETADGVVGEMTATSTDSGL---SSGGVLRNAGTRAS--------VDARGVETLVARFEVLEDEVAAMSARRAQCEAQAKVLLANLQKANTKVDRLERALAETRELLSVTRRDLGEVEATRDEALAEAKRVGSRLQTSEEQLLRSKRELDLLKAERSVWQVARSGIQEELAKVVAELELXXXXXXXXSRALAKSHXXXXXXXXXAARLSRRLEEERGGAGGARAALAAERETSRLAREEAEDXXXXXXXXXXXXXXXGAQKRVLVAGLRARERALGDRCAAAEARAEEAGMMRRAAEGRVRELKEEAERREAAQADAEIRLQRLRAEKKILLAEIRRGASGGGNXXXXXXXXXXGAGIGVEEREK----RREAGEEGLGDSGSEGGXXXXXXXXXQRGLLSPRGTGDSAQDRKA 2559
+E WF I I+L+ DGE PPI AASLRKPWSEFQRLHYLLL DEFGCDE VK +LP+LP+ P G S++ +A GLDAYLKALL VPAV+QS+VFSGFL G XXXXX G A + A ++PETA+DFLLQPF+YG AYV RR++HTE IDVLRGESVVWKFEVLDHLDI+FSV FRPHP+ S P A + DG AE +E+ + T +S P R G S + GDS G ++ GCG AG GG+ + APK + VHLPTRYSTGGGD VQGSF+CPA GTC+LRWDN++SRLRGKRL FV ES TV TM+AAIEAAGA +HKRR RSAAA+ ILDS +GEV+V V AVG DD ED G DG +AG S YY S Y+FGRVRR+ A LLRDLG M+D T+ G+ G A S G SSGG + G ++ V+A GV LVA+FE+LEDEVA++SARRAQ EAQAKVLLANLQK+N + DRLER+L ETRE LS R L E E RDEA A A G+RLQTSEEQLLR++R+ +LL+AERSVW VARSGIQEELAKVVAELE SRALAKSH XXXXXXXXAARLSRRLEEERGGAGGARAALAAERE SRLAREEAED GAQKRVLVAGLRARERALGDRCA AEARAE EAAQAD E+RLQRLRAEKK+LLAE+RRGA G G G G +E E R G++ G G+ GG +RG LSPR +G + QD KA
Sbjct: 52 EEHWFKIDITLE-PDGEGLAAGEDPPPPIHAASLRKPWSEFQRLHYLLLADEFGCDEAVKEKLPALPARPPTAVARGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSAELAQGLDAYLKALLTVPAVIQSQVFSGFLAESG-----------GXXXXXXXXGACSASEE-------------ARKSPETAIDFLLQPFEYGRAYVPRRAEHTESIDVLRGESVVWKFEVLDHLDIDFSVTFRPHPLAASSRRPLEA--DEDGGRPPTAEEAEDLGVLDTGVGLASSPGPRGVGNGGVAASSANGDSGSTEAGRKRSRWWSRSGGCGGAAGEAVGGTGVGAVSAPKGETVHLPTRYSTGGGDPVQGSFSCPAAGTCILRWDNAFSRLRGKRLCFVFESVTVQTMQAAIEAAGAADHKRRAARSAAAQTILDSGRGEVKVCVTAVGAADDYSGGEEDGKEGNDGGIYSVSAGSSDAIYYSSLYRFGRVRRVVAGLLRDLGGMVDVTRTSGGIDGAAIAESGRGGSGSGSSGGSAFDVGRGSAGRGDRYGNVNAEGVAKLVAQFELLEDEVASVSARRAQSEAQAKVLLANLQKSNARTDRLERSLEETREDLSTVRETLRETETARDEAAAAATEAGARLQTSEEQLLRARRQHNLLQAERSVWHVARSGIQEELAKVVAELEQERHRHEDTSRALAKSHEXXXXXXXXAARLSRRLEEERGGAGGARAALAAEREASRLAREEAEDARTAVAELDAAVAELGAQKRVLVAGLRARERALGDRCAGAEARAEXXXXXXXXXXXXXXXXXXXXXXXEAAQADGEVRLQRLRAEKKVLLAEVRRGAGGEGGGAAAGVSA---GGDGGKESEGVGSLRGVVGDDARGREGAGGGSGGSS----RRGSLSPRSSGKNVQDNKA 944
BLAST of mRNA_A-nodosum_M_contig874.25.1 vs. uniprot
Match: D8LGY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY0_ECTSI) HSP 1 Score: 410 bits (1053), Expect = 5.730e-127 Identity = 316/717 (44.07%), Postives = 364/717 (50.77%), Query Frame = 1
Query: 1 QEPWFNIRISLKRADGE---------PPIPAASLRKPWSEFQRLHYLLLTDEFGCDEDVKAQLPSLPSELPPTTNGGNDGDMKSNADVVAGGLDAYLKALLAVPAVVQSEVFSGFLEAQGRRCEEREXXXXXXXXXXGWSGGSRAEKVNNIYGDTNIH----GTGAPRTPETAVDFLLQPFDYGEAYVRRRSKHTERIDVLRGESVVWKFEVLDHLDINFSVVFRPHPVPLSPLVPEVATCENDGAEPS--------------------ENPSLKAT-----TSSKPNGRS-------RRSGWWGSGSGGDSNVGRRGEVKAGCGAKAGAEAGGSERESALAPKKQIVHLPTRYSTGGGDLVQGSFTCPADGTCLLRWDNSYSRLRGKRLRFVVESATVATMRAAIEAAGATEHKRRNTRSAAARAILDSDQGEVRVSVMAVGIGDDLGREAEDEGVGDGSDSGGNAGVSYYYPSQYKFGRVRRIAATLLRDLGTMLDANETADGVVGEMTATSTDSGLSSGGVLRNAGTRASVDARGVETLVARFEVLEDEVAAMSARRAQCEAQAKVLLANLQKANTKVDRLERALAETRELLSVTRRDLGEVEATRDEALAEAKRVGSRLQTSEEQLLRSKRELDLLKAERSVWQVARSGIQEELAKVVAELELXXXXXXXXSRALAKSHXXXXXXXXXAARLSRRLEEERGGAGGARAALAAE 2016
+E WFNI I+L+ DGE PP+ AASLRKPWSEFQRLHYLLL DEFGCDE VFSGFLE RR G ++ ++ GD + G A ++PETA+DFLLQPF+YG AYV RR++HTE IDVLRGESVVWKFEVLDHLDI+FSV FRPHP+ S P A + DG PS +P + +S NG S +RS WWG R G GC AG GG+ + APK + VHLPTRYSTGGGD VQGSF+CPA GTC+LRWDN++SRLRGKRL FV ES TV TM+AAIEAAGA +HKRR RSAAA+ ILDS +GEV+V V AVG DD G + ED V+ + A L LV R + NL +T V+RLER+L ETRE LS R+ L E E RDEA A A + LQTSEEQLLR++R+ DLL+AERSVW VARSGIQEELAKVVAELE SRALAKSH XXXXXXXXAARLSRRLEEERGGAGGAR LA+E
Sbjct: 52 EEHWFNIDITLE-PDGEGLAAGEDPPPPVHAASLRKPWSEFQRLHYLLLADEFGCDE-----------------------------------------------------VFSGFLEEHSRRRHR---------------GANKEDEEKESGGDGSAGACSTGEEARKSPETAIDFLLQPFEYGRAYVPRRAEHTESIDVLRGESVVWKFEVLDHLDIDFSVTFRPHPLASSSRRPLEA--DEDGGRPSTAEEQEEEDRGVLDAGVGLASSPGPRGVGNGGVAASSANGDSSGTEAGRKRSRWWG----------RSG----GCEGAAGDADGGTGGGAVSAPKGETVHLPTRYSTGGGDPVQGSFSCPAAGTCILRWDNAFSRLRGKRLCFVFESVTVQTMQAAIEAAGAADHKRRAARSAAAQTILDSGRGEVKVCVTAVGAADDYGGDEED---------------------------VKEVGAAFL--------------------------------------------------ALVPRN------------------------VMNLPSFHT-VERLERSLEETREDLSTVRKTLRETETARDEAAAAAAEASAGLQTSEEQLLRARRQHDLLQAERSVWHVARSGIQEELAKVVAELEQERHRHEDTSRALAKSHEXXXXXXXXAARLSRRLEEERGGAGGAREDLASE 581
BLAST of mRNA_A-nodosum_M_contig874.25.1 vs. uniprot
Match: A0A835ZFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW3_9STRA) HSP 1 Score: 282 bits (722), Expect = 3.430e-78 Identity = 271/765 (35.42%), Postives = 350/765 (45.75%), Query Frame = 1
Query: 1 QEPWFNIRISLKRADGEPPIPA-----------ASLRKPWSEFQRLHYLLLTDEFGCDEDVKAQLPSLPSELPPTTNGGNDGDMKSNADVVAGGLDAYLKALLAVPAVVQSEVFSGFLEAQGRRCEEREXXXXXXXXXXGWSGGSRAEKVNNIYGDTNIHGTGAPRTPETAVDFLLQPFDYGEAYVRRRSKHTERIDVLRGESVVWKFEVLDHLDINFSVVFRPHPVPLSPLVPEVATCENDGAEPSENPSLKATTSSKPNGRSRRS-GWWGSGSGGDSNVGRRGEVKAGCGAKAGAEAGGSERESALAPKKQIVHLPTRYSTGGGDLVQGSFTCPADGTCLLRWDNSYSRLRGKRLRFVVESATVATMRAAIEAAGATEHKRRNTRSAAARAILDSDQGEVRVSVMAVGIGDDLGREAEDEGVGDGSDSGGNAGVSYYYPSQYKFG---RVRRIAATLLRDLGTMLDANETADGVVGEMTATSTDSGLSSGGVLRNAGTRASVDARGVETLVARFEVLEDEVAAMSARRAQCEAQAKVLLANLQKANTKVDRLERALAETR-ELLSVTRRDLGEVEATRDEALAEAKRVGSRLQTSEEQLLRSKRELDLLKAERSVWQVARSGIQEELAKVVAELELXXXXXXXXSRALAKSHXXXXXXXXXAARLSRRLEEERGGAGGARAALAAERETSRLAREEAEDXXXXXXXXXXXXXXXGAQKRVLVAGLRARERALGDRCAAAEARAEEAGMMRRAAEGRVRELKEE 2247
QEPWF + I L A +P P A LRK WS+FQRLHYLLLTDEFGCD+ VKA LP LP+ P +AD A L++Y++ LLAVPAV+ S FSGFL G GGS E + P+TA+ FLLQPF YV RR +++ + +L+GESV W+F+V LDI+F+V F P CE S+ +G RR GW G V E GC G E A P+ +VH TRY GG VQGS T ADG C LRW N +SRLRGKRL FV E+ A MRAA++AA A K R +A+ + VSV S GG+ + ++ + V R++ G G+ + + R V TL+ +E LEDE+A MSARRAQ EAQ KVLLA LQ+A V + TR EL +TRR ++ R+EAL EA +EE+LL ++RE +LL+AERSVWQVARSGIQ ELA+ V LE AL +S RL+ R+ A G R A +E + AR E+ED AQKR+LV LR +++A D+ +A +A AEEA MM+RAAE R+++L+ E
Sbjct: 59 QEPWFEVIIHLA-ASPDPQQPGTPXXXXXXAKHACLRKAWSDFQRLHYLLLTDEFGCDDAVKALLPPLPTLAP------------GDADATAAALNSYMQRLLAVPAVLASAKFSGFL---------------------GGDGGSPPEGGSAXXXXXXXXXXXGRGEPQTAIGFLLQPFAPHCVYVPRRQEYSRELVILKGESVAWRFDVDCGLDIDFTVEFTP--------------CEVH------------QRSALVSGEGRRQRGWLG-------YVSPASEGAGGC--------TGDGVEGA--PRSVLVHRRTRYP--GGARVQGSCTSAADGLCALRWGNGHSRLRGKRLYFVAEAVDAAAMRAAVQAADACAFKASAARGGSAQQRITPGAA---VSVXXXXXXXXXXXXXXXXXXXXXSPGGGDPPAGRFSLTRSAYNLVWNVLRLSPYYGLGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGL-------SEYEER-VATLLVNYERLEDELAGMSARRAQAEAQTKVLLAQLQRAKADVASAQEGWQGTRAELCEMTRR-ADDMALEREEALQEAHSAERAQLQAEERLLAARRECELLQAERSVWQVARSGIQSELARAVGALETEKHAHEDARAALKRSQTAVERLEAERQRLAERVA-----AAGDREAQERLKEEAAAARAESEDVRVALAEVEAETAKLSAQKRLLVVELRQQKKAFLDQLSAVQAEAEEARMMQRAAETRLKKLEGE 727 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig874.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig874.25.1 >prot_A-nodosum_M_contig874.25.1 ID=prot_A-nodosum_M_contig874.25.1|Name=mRNA_A-nodosum_M_contig874.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=884bp MKSNADVVAGGLDAYLKALLAVPAVVQSEVFSGFLEAQGRRCEEREEGGGback to top mRNA from alignment at A-nodosum_M_contig874:139599..144871+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig874.25.1 ID=mRNA_A-nodosum_M_contig874.25.1|Name=mRNA_A-nodosum_M_contig874.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5273bp|location=Sequence derived from alignment at A-nodosum_M_contig874:139599..144871+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig874:139599..144871+ >mRNA_A-nodosum_M_contig874.25.1 ID=mRNA_A-nodosum_M_contig874.25.1|Name=mRNA_A-nodosum_M_contig874.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2652bp|location=Sequence derived from alignment at A-nodosum_M_contig874:139599..144871+ (Ascophyllum nodosum dioecious)back to top |