mRNA_A-nodosum_M_contig872.20.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: D8LDS8_ECTSI (SECIS binding protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS8_ECTSI) HSP 1 Score: 387 bits (993), Expect = 3.440e-113 Identity = 333/946 (35.20%), Postives = 441/946 (46.62%), Query Frame = 3
Query: 1035 EISPPTGNGRGPPLCKGKSAGGKTDLMPKRSVHRLPGSGENVRKLGKQRLGQKKRKLSSLKKRILLHRAAQW-------GYEMSSSVGRSSSYSCTEA-------------------------KSISTARAG------QLWVVNIRNLIDEEDVEDEEDRVEVERDLRHMASEFGGVIRVEVPRSL-------ELSGTTAV-EVAPV--KVFFPTPEEAERARAGFHGRVVAGNTLEAEVTDELTEREENVDVVTCGKNGGGVMNTEENRERSDSCSLARGTDAPFSPKGAKVEKVAASAARASAAAQCPNLTRLEDSKKDDRLCGAHIVASPDHP--WVVVVRNLIDVEDDLEEDEDYAEVYVDTTEIVGAYSRPVSVNIVSFKNDGEGEGEGD----------QVREVIATFASRGEAEQCVAGLHGRRIGGKELTVELVEPPADLDLPSDAL-----EHGSIGNIGLSLAHGAAEAPSDTRTTTRGKGTWKMEIGDGSDGGGVGTIAATSAPKCSARLGETTAAHG----WRVVVRNLIEHEDLEEDDD-YAESRADFAAMTSEYGHVSALYIPRSEEEAIGACAGKAKLGEAVAVFGSLQEARTCARGLDSRTVGGKRLEAVVLSSPIEEAR------SLGRNVDLSSGQR-PSHGKPHAVHQPKRESQAGVAQGGQGFVTPPRPEENTEDTFTSEAPSMSCGEGMKSAAAGGLPGATSQAASAGASEPVTALXXXXXXXXXXXXXSKNNGSFAVLRTAERGKRISEKYKHIAALPKHPGSSGWGPKTYETQRPDPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAIGS----SPQEQEPASE 3629
+ SP +G R P +G++ MPK EN+ K GKQRLG +K+KLS+LKK+ILL R +W S+ S C KS S + G +W + I NL+D+EDVED++D E+ERDL M+S FG V V+VPR E+S A E A V KV F T EAE AR G +GR+V G L L R+ + D CG PD W V + NLID EDDL+++++YAE+ + + ++G Y + V V V + +GE + D + V+ TF S EAE CV G+ G R+GGKEL +V ++ LPS+ EH ++ ++A +G K E G T C + +T AA WRVV+R LI+ +DL++DDD YAE +D A+ S YG V L IPR E G+C A+ GEAV VF SLQEA CARGL R V G L+A VL+ P + + G +++ +R P+ P HQ G PE P M G G + G P + A + EP + A+ GKRI KY+ AALPK PG G P Y Q PD EV++LVFEML LLFKFQERARL+DP KA++RRRLV+GL+EVL+G++A+KVRL+I+APNVDA+ G+ GLD KV E+ID A E E P+VFALS+RKIGKALGK +K+S VGVYSFDGANEQQK+L RRM+ I S SP++ +P ++
Sbjct: 59 QSSPSSGTRRSGPYAQGRA-------MPKN---------ENIPKPGKQRLGPRKKKLSTLKKKILLDRLERWRDKQHEGALSTPSATASSEEAKCNNPFPLCPPGELSPPPSPPATICPAVVDKSTSYGQVGGANGERSVWAITIYNLVDQEDVEDDDDHAEIERDLWDMSSAFGVVRSVQVPRGTAVQVSDAEVSAAAAAGEPAAVAAKVAFATNAEAECARDGLNGRIVGGKPL---------------------------------------------------------------------------LVRIH--RCDGHFCGGVCPGDPDGSGLWRVAIENLIDEEDDLDDEDEYAEISANVSAMMGCYGKLVDVQ-VRRSSPSKGEVQEDVATRAATTAGATQAVVVTFGSLAEAEACVQGIKGCRVGGKELDAHVVLD-SERVLPSNPAFKCDQEHAHSSDVAAAVAG-------------QGDSMMKQEAG-------------TEPSPCVDQ--DTAAAVASSTEWRVVIRGLIDEDDLQDDDDDYAEVCSDVTALVSSYGAVVGLDIPRGRET--GSCCYGAEPGEAVVVFRSLQEAEACARGLSGRKVAGNILDAQVLTQPAPSQQGPLQGGASGTGPPVANRERKPAKECPLPQHQASSHQSCGKV-----------PE------LDGSGPGMLRGFGNRVEDCCGRP----KIACTDSDEPQAIAAAAPPGQSIEGPKTTA--------LAKAGKRIQTKYQEAAALPKPPGVRGGLPNAYVNQPPDKEVNDLVFEMLQLLFKFQERARLSDPSKAKTRRRLVIGLREVLRGVKAKKVRLLIVAPNVDAVGGEGGLDDKVVEIIDKAREAEYPVVFALSKRKIGKALGKTIKVSAVGVYSFDGANEQQKQLKRRMETISSLPSPSPRQSDPPTD 850
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A6H5LFS5_9PHAE (Ribosomal_L7Ae domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFS5_9PHAE) HSP 1 Score: 364 bits (935), Expect = 1.980e-103 Identity = 328/936 (35.04%), Postives = 427/936 (45.62%), Query Frame = 3
Query: 1035 EISPPTGNGRGPPLCKGKSAGGKTDLMPKRSVHRLPGSGENVRKLGKQRLGQKKRKLSSLKKRILLHRAAQW-------GYEMSSSVGRSSSYSCTEA-------------------------KSISTARAG------QLWVVNIRNLIDEEDVEDEEDRVEVERDLRHMASEFGGVIRVEVPRSLEL--------SGTTAVEVAPV--KVFFPTPEEAERARAGFHGRVVAGNTLEAEVTDELTEREENVDVVTC-GKNGGGVMNTEENRERSDSCSLARGTDAPFSPKGAKVEKVAASAARASAAAQCPNLTRLEDSKKDDRLCGAHIVASPDHPWVVVVRNLIDVEDDLEEDEDYAEVYVDTTEIVGAYSRPVSVNIVSFKNDGEGEGEGD----------QVREVIATFASRGEAEQCVAGLHGRRIGGKELTVELVE------PPADLDLPSDALEHGSIGNIGLSLAHGAAEAPSDTRTTTRGKGTWKMEIGDGSDGGGVGTIAATSAPKCSARLGETTAAHGWRVVVRNLIEHEDLEEDD------DYAESRADFAAMTSEYGHVSALYIPRSEEEAIGACAGKAKLGEAVAVFGSLQEARTCARGLDSRTVGGKRLEAVVLSSPIEEARSLGRNVDLSSGQRPSHGKPHAVHQPKRESQAGVAQGGQGFVTPPRPE--ENTEDTFTSEAPSMSCGEGMKSAAAGGLP-----GATSQAASAGASEPVTALXXXXXXXXXXXXXSKNNGSFAVLRTAERGKRISEKYKHIAALPKHPGSSGWG-PKTYETQRPDPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAIGSSP 3605
+ SP G R P +G++ MPK N+ K GKQRLG K+KLS+LKK+ILL R +W G S+ S C+ KS S + G +W + I NL+DEEDVED++D E+ERDL M+S FG V V+VPR + + TA E A V KV F T EAE AR +GR+V G L L R C G GGG+ P P G+ + W V + NLID EDDL+++++YAE+ + + ++G Y + V V V + EGE + D + V+ TF S EAE CV G+ G R+GGKEL +V PP+ + L D EH ++ +++A +G+ K E G P C + +TTA DYAE +D + S YG V L IPR E G C A+ GEAV F SLQEA CARGL R V G L+A VL+ P + L G S P VH+ + ++ Q TPP + + S P + G G G P + A+A A+ P ++ A L A+ GKRI KY+ AALPK PG SG G P Y Q PD E ++LVFEML LLFKFQERARL+DP KA++RRRLV+GL+EVL+G++A+KVRL+I+APNVDA+ G+ GLD KV E+ID A E ETP+VFALS+RKIGKALGK +K+S VGVYSFDGANEQQK+L RRM+ I S P
Sbjct: 245 QSSPSRGTRRSGPYAQGRA-------MPKNG---------NIPKPGKQRLGPHKKKLSTLKKKILLDRLERWRDKQHGGGLSNPSATAASEEAKCSNLFPLCPPGGLSPPPSPPATICPAVVDKSTSYGQVGGGIGERNVWAITIYNLVDEEDVEDDDDHAEIERDLWDMSSAFGVVRSVQVPRGTTVQVSDAQVSAAATAGEPAAVAAKVAFATNAEAECARDELNGRIVGGKPL-------LVRRHR------CDGDFGGGIC--------------------PGDPDGSGL-------------------------------------------WRVAIENLIDEEDDLDDEDEYAEISANVSTMMGCYGKLVDVQ-VRRSSPSEGEAQEDVATRAATTAGATQAVVVTFGSLAEAEACVQGIKGCRVGGKELDAHVVHDSERVLPPSPV-LKCDDQEHARQSDVAIAVAG-------------QGESAMKKEAG-------------MERPPC---VDQTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXDYAEVCSDVTGLVSSYGAVVGLDIPRGRET--GICCYGAEPGEAVVAFRSLQEAEACARGLSGRKVAGNILDAQVLTQPTPSQQGT-----LQGGA--SGTDPPVVHREWKPAKGCTLPQQQSMATPPSHQLCGKVAELHVS-GPGLLGGIGNSGEDDRGRPKISFTDSDEPQATAAAAPPAHSI---------------EGPKTAAL--AKAGKRIPMKYQEAAALPKPPGISGGGSPNAYVHQPPDKEANDLVFEMLQLLFKFQERARLSDPAKAKTRRRLVIGLREVLRGVKAKKVRLLIVAPNVDAVGGEGGLDDKVVEIIDKAREEETPVVFALSKRKIGKALGKTIKVSAVGVYSFDGANEQQKQLKRRMETISSLP 1030
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A7S2BNP8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNP8_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.060e-31 Identity = 73/138 (52.90%), Postives = 100/138 (72.46%), Query Frame = 3
Query: 3189 QRPDPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVD--AMAGDVGLDAKVKEVIDAAVECET-PIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAI 3593
QR D E+D LVFEML L KFQERAR+ DP KA+ RRRLV GL+EV +G++A KV+ V++APN+D MAG GLD V E+I A + E I+FALS++K+GKALGK +++S +G+YS DGA K + +R++ +
Sbjct: 10 QRLDGELDQLVFEMLGELMKFQERARIQDPTKAKLRRRLVFGLREVKRGIKANKVKCVVVAPNIDEGTMAG--GLDDVVNEIITLARDAEDCHIIFALSKKKMGKALGKHIRVSAIGIYSADGAYPLYKSVLKRLEKM 145
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A7S2DRG5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRG5_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.790e-31 Identity = 75/167 (44.91%), Postives = 110/167 (65.87%), Query Frame = 3
Query: 3099 GKRISEKYKHIAALPKHPGSSGWGPKTYETQRP-DPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETP-IVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAI 3593
GKRI +KY +PK P + + Y T +P E+D LVF ML L +FQER RL DP K++ RRRLV GL+EV +G+++ KV+ +I+APN+D + GL+ V +++ A E ET ++FALS++K+G AL K VK+S VG+YS DGA + KK+ + M+ +
Sbjct: 12 GKRIPDKYCSAKQVPKIPNKNPV--REYVTSQPLSAELDKLVFSMLQELMEFQERLRLRDPTKSKLRRRLVFGLREVKRGIKSEKVKCLIVAPNIDEGSIQGGLNDTVNDILTLARERETTTVIFALSKKKLGAALRKSVKVSAVGIYSMDGAFDTYKKILKMMEEL 176
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A7S1GBK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBK4_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.400e-26 Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 3
Query: 3171 PKTYETQRPDPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAIGS 3599
P+ Y TQ P P +D LV E L LF +QER R KA R+RL+ GL+EV + +RA KV ++++PN++ GLD +V ++ A E E P+VFALSRR++G+ALGK ++S+VGV S+DG+N ++ +A +A +
Sbjct: 22 PREYVTQAPSPALDALVTEWLSTLFYYQERLRAQSKAKAAMRKRLLFGLREVDRSMRAGKVLCLVVSPNIEPGTARGGLDDRVGAILARAEENEVPVVFALSRRRLGRALGKSTRVSLVGVLSYDGSNLHRQVMAAAKEAAAA 164
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: B8CBT9_THAPS (Ribosomal_L7Ae domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBT9_THAPS) HSP 1 Score: 116 bits (291), Expect = 5.370e-26 Identity = 66/161 (40.99%), Postives = 107/161 (66.46%), Query Frame = 3
Query: 3102 KRISEKYKHIAALPKHPGSSGWGPKTYETQRPDPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRM 3584
K I E++ +PK P + P++Y ++ D L+ EML L + QER++ D AR+RRRLVMGL+EV +G+RA KV++V++A N+D +D+K++E++D A + PI++ L++R++GKA+GK +K+SVVG+ + DGA+E KKL R +
Sbjct: 29 KIIPERFAACKRVPKIPNAGI--PRSYASKINDERATPLLVEMLGELMRLQERSK--DDKNARARRRLVMGLREVARGIRAHKVKMVVMANNLDEYGA---IDSKLQEILDMARAEDLPILYELNKRRLGKAIGKSIKVSVVGIQNADGAHEPFKKLKRML 182
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A7S2S0F1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0F1_9STRA) HSP 1 Score: 114 bits (285), Expect = 7.980e-25 Identity = 68/164 (41.46%), Postives = 104/164 (63.41%), Query Frame = 3
Query: 3102 KRISEKYKHIAALPKHPGSSGWGPKTYETQRPDPE-VDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKA 3590
K I EKY +PK P P+ Y + R D E V L+ EML L + Q R + D AR+RRRLVMG +EV +G+R+ K++++I+A N+D +D+K+++++D A E P++F +++RKIGKALGK +K+ +VG+ + DGA+E KKL + M A
Sbjct: 59 KIIPEKYAACKRVPKIPNKGI--PRDYASTRIDDENVVPLICEMLGELMRLQIRNK--DDKNARARRRLVMGFREVARGIRSHKIKMIIMANNLDEYGA---IDSKLQDILDMAKEDNLPVIFEMNKRKIGKALGKTIKVGIVGIQNADGAHEPFKKLKKLMGA 215
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A397AHD0_9STRA (Ribosomal_L7Ae domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AHD0_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.150e-24 Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 3
Query: 3204 EVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAIGSSPQEQEPASE 3629
EV+ LV L L QERARL +P+KA+ RRLV GL+EV +G++ KV +++A N+D A + GLD KV E+ID A TP++F+LS+RK+GKAL K +++S VGVY+ DGANE L +++ A+ ++P Q SE
Sbjct: 339 EVEGLVVAFLGRLMSLQERARLTNPLKAKKTRRLVFGLREVKRGVKNGKVVCLMVAYNIDECAAEGGLDDKVMELIDLARLHNTPVIFSLSKRKLGKALLKTIRVSCVGVYNVDGANELWADLKKKVAALQANPPPQPDCSE 480
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: W4G1D3_9STRA (Ribosomal_L7Ae domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1D3_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.390e-24 Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 3
Query: 3063 NGSFAVLRTAERGKRISEKYKHIAALPKHPGSSGWGPKTYETQRPDP--EVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLARRMKAIGSSPQEQEPASEA 3632
+GS + T G ++ + + LP + + Y QR D EV+ LV L L QERARL +P+KA+ RRLV GL+EV +G++ KV +++A N+D A + GLD KV E+ID A TP++F+LS+RK+GKAL K +++S VGVY+ DGANE L +++ A+ ++P Q A
Sbjct: 458 SGSTSTPTTKGEGGQVLSELPSLQRLP-----NAQAIREYVDQRVDVGGEVEGLVVAFLGRLMSLQERARLTNPLKAKKTRRLVFGLREVKRGVKNGKVVCLMVAYNIDECAAEGGLDDKVMELIDLARLHNTPVIFSLSKRKLGKALLKTIRVSCVGVYNVDGANELWADLKKKVAALQANPPPQPDCGTA 644
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Match: A0A1Z5KEV5_FISSO (Ribosomal_L7Ae domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEV5_FISSO) HSP 1 Score: 122 bits (305), Expect = 2.450e-24 Identity = 69/158 (43.67%), Postives = 104/158 (65.82%), Query Frame = 3
Query: 3102 KRISEKYKHIAALPKHPGSSGWGPKTYETQRPDPEVDNLVFEMLVLLFKFQERARLADPVKARSRRRLVMGLKEVLKGLRARKVRLVILAPNVDAMAGDVGLDAKVKEVIDAAVECETPIVFALSRRKIGKALGKCVKISVVGVYSFDGANEQQKKLA 3575
KRI E++ +PK P S P+ Y + V L+ EML L + Q+RA A+ A+++RRLVMGL+EV +G+RARKVR+V++A N+D LD K++E++D A + E P+ F S+R +GKA+GK +KI+V+G+ + DGAN+Q KKL+
Sbjct: 649 KRIPERFAECKRVPKIPNSGQ--PRHYAILSKNETVKPLLMEMLAELMRLQKRA--AEDKNAKAKRRLVMGLREVARGIRARKVRMVVMANNLDEYGA---LDEKLQEILDLAQKEEVPVFFEFSKRSLGKAIGKTIKIAVIGIQNPDGANQQFKKLS 799 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig872.20.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig872.20.2 >prot_A-nodosum_M_contig872.20.2 ID=prot_A-nodosum_M_contig872.20.2|Name=mRNA_A-nodosum_M_contig872.20.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1042bp MDRGTRGTGCRSDGNEASCHRNGLMGGVKASSTRVGSGTEIVGGNHDRREback to top mRNA from alignment at A-nodosum_M_contig872:292768..299672+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig872.20.2 ID=mRNA_A-nodosum_M_contig872.20.2|Name=mRNA_A-nodosum_M_contig872.20.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6905bp|location=Sequence derived from alignment at A-nodosum_M_contig872:292768..299672+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig872:292768..299672+ >mRNA_A-nodosum_M_contig872.20.2 ID=mRNA_A-nodosum_M_contig872.20.2|Name=mRNA_A-nodosum_M_contig872.20.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=3126bp|location=Sequence derived from alignment at A-nodosum_M_contig872:292768..299672+ (Ascophyllum nodosum dioecious)back to top |