mRNA_A-nodosum_M_contig8706.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8706.1.1
Unique NamemRNA_A-nodosum_M_contig8706.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8706.1.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.230e-12
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   88 IVDYLVTLAMLRTK----EKEEEEIGTRRECMRALIGLAESRSTRNMRAMRLLLSATPSGGGAK 267
            +V+ LV L+M R       K EEEIG RRECMRAL+GLAESR  R+M AMRLLLS  PSG GAK
Sbjct:  510 LVESLVVLSMGRVDGSAARKSEEEIGMRRECMRALVGLAESRVVRDMPAMRLLLSTDPSGRGAK 573
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8706.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYI2_9PHAE6.230e-1264.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8706contigA-nodosum_M_contig8706:11442..12616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870268.2157264-CDS-A-nodosum_M_contig8706:11442..114961680870268.2157264-CDS-A-nodosum_M_contig8706:11442..11496Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8706 11443..11496 -
1680870268.2278733-CDS-A-nodosum_M_contig8706:12400..126161680870268.2278733-CDS-A-nodosum_M_contig8706:12400..12616Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8706 12401..12616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8706.1.1prot_A-nodosum_M_contig8706.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8706 11443..12616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8706.1.1

>prot_A-nodosum_M_contig8706.1.1 ID=prot_A-nodosum_M_contig8706.1.1|Name=mRNA_A-nodosum_M_contig8706.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=90bp
VIVANLASTPALCRSLLDSDPPLTSPKRGIVDYLVTLAMLRTKEKEEEEI
GTRRECMRALIGLAESRSTRNMRAMRLLLSATPSGGGAKC
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mRNA from alignment at A-nodosum_M_contig8706:11442..12616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8706.1.1 ID=mRNA_A-nodosum_M_contig8706.1.1|Name=mRNA_A-nodosum_M_contig8706.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at A-nodosum_M_contig8706:11442..12616- (Ascophyllum nodosum dioecious)
GTTATCGTGGCCAACCTCGCCAGTACTCCGGCGCTGTGCCGGTCTCTCCT
CGACTCGGACCCACCGTTGACCTCTCCTAAGCGGGGTATTGTGGACTATC
TAGTCACACTGGCGATGCTGAGAACGAAGGAAAAGGAAGAGGAGGAGATT
GGGACCAGACGGGAGTGTATGCGTGCTCTAATTGGCCTCGCCGAATCGAG
ATCTACAAGAAATATGGTGAGAATGAAGGCCTGTCGTGGTAGTAGGGGAT
AGTCCGGGTGCCCCCAAGGGGGAGACGCTTTGTCATTCGGCTTTGATAAG
GTTTTGGTGGTGCTTTCACCGGCGTCTATGTCATTTGCCCCCGCGTTGGT
AATGTTTCGCTATGCTTTACTTCACTCGGATCTACCAGGTATCTAACTAA
GAACCTCCCGTATAATATTGCTCTTAGATACCATACTGCTGTACCTATGT
TCTTAGGCGTCGGGGCTGATCCGACCTTAAGGGACTAAAGTGGCTGGTTT
TTGCCCAAAAAAAGCGCGATGATATTTCTCTCCATCTCTTTTACACATAC
TCCGTAGTTATTTTTTCCAATGTTACACTTCTGGCTATGCTCCTCGTGCA
GTAAATAGCAACTGGTCCAGCTTTGGGATCAGATTTCTCTACCTAATTTT
TCCATCCAATTTTTCTTCCTAATACCAGTAGAGTTTCAACCTACGCCAGT
ATTTAACCTAGAACAACCAGCATTGACTGACGTTACTATGTAAACCTCTA
ATGACACTTATTGTGTGAAAGGGCCCTGAAGGGCCCTGAACGTACATTAT
GTCGAGGGACGTTGCAATTTTAATATCGCTCACTCGTTCTCTAGTAGAGG
CGGCTTTGTGGTGTACCAGTACCAACCAATACCAACCAAGGTCCAGCAAC
TGGGAACACACAACGTAGTAAAAAAACACTCTACCATATTTCTAGCACCG
CCGGGCTCCTCACTCTTCCCTCGTCTCTCTTCCCTACTCTCTTCCCTCAT
CTCTCCTCCCTACTCTCTTCCCTCGTCTCTCCTCCCTACTCTCTTCTCTC
GTCTCTCCTCCCTACTCTCTTCCCTCGTATCTCCTCCCTACTCTCTTCCC
ATTGCTGTATGGTGTTCCAGCGCGCCATGAGGTTGCTTCTCTCAGCAACG
CCCAGCGGCGGAGGGGCGAAATGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8706:11442..12616-

>mRNA_A-nodosum_M_contig8706.1.1 ID=mRNA_A-nodosum_M_contig8706.1.1|Name=mRNA_A-nodosum_M_contig8706.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at A-nodosum_M_contig8706:11442..12616- (Ascophyllum nodosum dioecious)
GTTATCGTGGCCAACCTCGCCAGTACTCCGGCGCTGTGCCGGTCTCTCCT
CGACTCGGACCCACCGTTGACCTCTCCTAAGCGGGGTATTGTGGACTATC
TAGTCACACTGGCGATGCTGAGAACGAAGGAAAAGGAAGAGGAGGAGATT
GGGACCAGACGGGAGTGTATGCGTGCTCTAATTGGCCTCGCCGAATCGAG
ATCTACAAGAAATATGCGCGCCATGAGGTTGCTTCTCTCAGCAACGCCCA
GCGGCGGAGGGGCGAAATGT
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