mRNA_A-nodosum_M_contig87.45.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig87.45.1
Unique NamemRNA_A-nodosum_M_contig87.45.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A6H5L0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.090e-41
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 RAYQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            R YQ+ML KRSKLPA+EMRDHIV TV+++QVVVVSGETGCGKTTQVPQLVLDTMI   +GA+ANIIVTQPRRISAVGVAERIAAERAER+GETAG
Sbjct:  189 RPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKEGASANIIVTQPRRISAVGVAERIAAERAERIGETAG 283
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.030e-40
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 RAYQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            R YQ+ML KRSKLPA+EMRDHIV TV+++QVVVVSGETGCGKTTQVPQLVLDTMI   +GA+ANIIVTQPRRISAVGVAERIAAERAER+GETAG
Sbjct:  259 RPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKEGASANIIVTQPRRISAVGVAERIAAERAERIGETAG 353
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A7S2NVW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVW4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.380e-32
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    7 YQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            + +M+ +R  LPA++M+  IV  +  +QV VVSG+TGCGKTTQVPQLVLD +I  G GA ANII+TQPRRISA+GVAERIA+ER ER+GET G
Sbjct:   43 FHKMMSQRCNLPAYQMKTEIVKMIAENQVTVVSGDTGCGKTTQVPQLVLDDLILQGGGAGANIIITQPRRISAIGVAERIASERCERIGETVG 135
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: B8C1N5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1N5_THAPS)

HSP 1 Score: 122 bits (306), Expect = 2.440e-30
Identity = 59/90 (65.56%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:   16 MLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            ML +R KLPA++M+D ++ T++++QV V+SG+TGCGKTTQVPQLVLD +I + +G+ AN+IVTQPRRISA+GV+ERIAAER ER+GET G
Sbjct:    1 MLSQRIKLPAYKMKDKVLETIRANQVTVISGDTGCGKTTQVPQLVLDDLILSNRGSEANVIVTQPRRISAIGVSERIAAERCERIGETVG 90
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A7S3QBY0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBY0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.520e-30
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   16 MLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            ML +R +LPAF+M + IV T+ S+Q+ VVSG+TGCGKTTQVPQLVLD MI   +G+ ANIIVTQPRRISA+GV+ERIA+ER ERVGET G
Sbjct:  722 MLSQRQRLPAFQMEEKIVRTIGSNQISVVSGDTGCGKTTQVPQLVLDDMIRQNRGSEANIIVTQPRRISAIGVSERIASERCERVGETVG 811
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A835Z857_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z857_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.060e-28
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:   16 MLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            M  KR +LPA++M D IV  +  +QVVV+SGETGCGKTTQVPQLVLD +I  G GA AN++VTQPRRISA+GVAERIA ER ERVG  AG
Sbjct:  738 MQAKREQLPAYQMADGIVKAISQNQVVVISGETGCGKTTQVPQLVLDHLIATGVGACANMVVTQPRRISAIGVAERIAQERCERVGGMAG 827
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A7S0YLR7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YLR7_9CRYP)

HSP 1 Score: 109 bits (272), Expect = 1.080e-28
Identity = 53/91 (58.24%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    7 YQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGET 279
            YQ +L KR +LPA++MRD  + T+  ++V +VSG+TGCGKTTQ+P L  D M+ +G+G + ++IVTQPRRISA  VAER+A ERAERVGE+
Sbjct:   45 YQAILAKRRELPAYKMRDQCIQTILGNRVTIVSGDTGCGKTTQLPALYFDHMVASGKGGSTHVIVTQPRRISATSVAERVAQERAERVGES 135
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A1D1VYH4_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VYH4_RAMVA)

HSP 1 Score: 116 bits (291), Expect = 2.640e-28
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    4 AYQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            AYQEML+ R KLPAF++R  ++ T++++QVVVVSGETGCGKTTQ+PQ +LD  IE G G    II TQPRRISA+ V+ERIA ERAE++G++ G
Sbjct:  253 AYQEMLKFRRKLPAFQVRQKLLDTIENNQVVVVSGETGCGKTTQLPQFILDDWIERGDGGRCRIICTQPRRISAISVSERIAKERAEKLGKSVG 346
[Close]
BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: A0A7S4DRF6_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DRF6_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 2.660e-28
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    4 AYQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            +YQEM   R KLPAF+ R  I+ T+ S QV+V+SGETGCGK+TQ+PQ +LD MIE G+G+ AN+  TQPRRISAVG+A R+A ERAE+VG T G
Sbjct:  417 SYQEMKTYRDKLPAFKERKRIIQTLDSHQVLVISGETGCGKSTQIPQFLLDHMIEQGKGSVANVFCTQPRRISAVGLASRVAEERAEKVGNTVG 510
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BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Match: L7LYI5_RHIPC (Putative deah-box rna helicase n=8 Tax=Rhipicephalus TaxID=34630 RepID=L7LYI5_RHIPC)

HSP 1 Score: 116 bits (290), Expect = 3.590e-28
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 RAYQEMLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMIEAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG 285
            R YQ ML+ R KLPA+ MR+ I+  ++ ++VVV+SGETG GKTTQVPQ +LD+ IE G G+   II TQPRRISA+ VAER+AAERAER GE+AG
Sbjct:  145 REYQSMLDFRKKLPAYTMREEIIDVIERNRVVVISGETGSGKTTQVPQFILDSYIEKGLGSLCKIICTQPRRISAISVAERVAAERAERCGESAG 239
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig87.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0U7_9PHAE9.090e-4185.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J2_ECTSI1.030e-4085.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2NVW4_9STRA3.380e-3264.52Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
B8C1N5_THAPS2.440e-3065.56Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3QBY0_9STRA2.520e-3070.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A835Z857_9STRA1.060e-2868.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0YLR7_9CRYP1.080e-2858.24Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1D1VYH4_RAMVA2.640e-2862.77Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A7S4DRF6_9EUKA2.660e-2862.77Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
L7LYI5_RHIPC3.590e-2863.16Putative deah-box rna helicase n=8 Tax=Rhipicephal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig87contigA-nodosum_M_contig87:686633..687315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1J2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K13026
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.18e-40
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size273
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870265.0829697-CDS-A-nodosum_M_contig87:686632..6867851680870265.0829697-CDS-A-nodosum_M_contig87:686632..686785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig87 686633..686785 -
1680870265.0956788-CDS-A-nodosum_M_contig87:687180..6873001680870265.0956788-CDS-A-nodosum_M_contig87:687180..687300Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig87 687181..687300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870265.1067104-UTR-A-nodosum_M_contig87:687300..6873151680870265.1067104-UTR-A-nodosum_M_contig87:687300..687315Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig87 687301..687315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig87.45.1prot_A-nodosum_M_contig87.45.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig87 686633..687300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig87.45.1

>prot_A-nodosum_M_contig87.45.1 ID=prot_A-nodosum_M_contig87.45.1|Name=mRNA_A-nodosum_M_contig87.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
MLEKRSKLPAFEMRDHIVSTVKSSQVVVVSGETGCGKTTQVPQLVLDTMI
EAGQGATANIIVTQPRRISAVGVAERIAAERAERVGETAG*
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mRNA from alignment at A-nodosum_M_contig87:686633..687315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig87.45.1 ID=mRNA_A-nodosum_M_contig87.45.1|Name=mRNA_A-nodosum_M_contig87.45.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at A-nodosum_M_contig87:686633..687315- (Ascophyllum nodosum dioecious)
AGGGCCTACCAGGAGATGCTGGAGAAGAGGTCGAAGCTGCCGGCTTTCGA
GATGCGCGACCACATCGTGTCCACCGTCAAGAGCAGCCAAGTGGTGGTTG
TCTCCGGAGAAACCGGCTGCGGCAAAACCACTCAGGCAGGTGGTTGTCTC
CGGAGAAATCGGCCGCTGCTTAAGCTAGTGCTCGTTCTGGCTCTGGCTCT
GGCTGCGGATGTCTGGTTCCGGCCTGGGCTGTCGGTTCCTTGTACTGGCT
TTTGCTCTGGTTTTCGCTCCGGTTCTCGCTATGGCGTTGGATATGGTTCT
GGCTCTGGTTCTCGCTCTTGGACGGACTCTGGTTCTGGCCCTGGGTCTGG
CTCTGGGTGTCTGGTTCCTTGTTTGGCCTCTCTATTTCTGGCACGGGTTC
TGACACCGGTTTTGACTTTGGGCCTTGGGTCTCATATCTCGCTCATTTTC
GCGGACACTTTCACTCTCCCCCTCTCTCTCCCCTCCCCCATTCCTCGCCT
TCAACCTCAATACAAACTCCCTATTTACAGGTCCCCCAGCTTGTCCTGGA
CACGATGATCGAAGCAGGACAGGGCGCGACGGCGAACATCATCGTCACGC
AGCCTCGCCGCATCTCCGCGGTTGGAGTCGCCGAGCGCATCGCGGCGGAA
CGCGCCGAAAGAGTTGGCGAAACCGCCGGGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig87:686633..687315-

>mRNA_A-nodosum_M_contig87.45.1 ID=mRNA_A-nodosum_M_contig87.45.1|Name=mRNA_A-nodosum_M_contig87.45.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig87:686633..687315- (Ascophyllum nodosum dioecious)
ATGCTGGAGAAGAGGTCGAAGCTGCCGGCTTTCGAGATGCGCGACCACAT
CGTGTCCACCGTCAAGAGCAGCCAAGTGGTGGTTGTCTCCGGAGAAACCG
GCTGCGGCAAAACCACTCAGGTCCCCCAGCTTGTCCTGGACACGATGATC
GAAGCAGGACAGGGCGCGACGGCGAACATCATCGTCACGCAGCCTCGCCG
CATCTCCGCGGTTGGAGTCGCCGAGCGCATCGCGGCGGAACGCGCCGAAA
GAGTTGGCGAAACCGCCGGGTAG
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